Wall clock time and date at job start Sun Mar 29 2020 23:34:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36934 * 119.99628 * 2 1 4 4 H 1.08003 * 120.00099 * 160.57172 * 3 2 1 5 5 C 1.38813 * 120.00468 * 340.29277 * 3 2 1 6 6 N 1.31620 * 119.99633 * 347.10268 * 5 3 2 7 7 Si 1.86793 * 120.00207 * 167.09693 * 5 3 2 8 8 H 1.48503 * 109.47298 * 60.00767 * 7 5 3 9 9 H 1.48502 * 109.47270 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47389 * 300.00572 * 7 5 3 11 11 C 1.46496 * 120.00086 * 180.02562 * 2 1 3 12 12 H 1.09000 * 110.64062 * 179.29816 * 11 2 1 13 13 C 1.55157 * 110.72000 * 56.15860 * 11 2 1 14 14 C 1.54914 * 101.57985 * 206.13473 * 13 11 2 15 15 N 1.47424 * 104.83306 * 37.00775 * 14 13 11 16 16 C 1.34777 * 125.64783 * 155.90931 * 15 14 13 17 17 O 1.21278 * 119.99657 * 179.97438 * 16 15 14 18 18 C 1.50696 * 120.00037 * 359.97053 * 16 15 14 19 19 C 1.52999 * 109.47057 * 180.02562 * 18 16 15 20 20 C 1.53002 * 117.49986 * 243.74896 * 19 18 16 21 21 C 1.53000 * 117.49870 * 175.09044 * 19 18 16 22 22 C 1.47322 * 108.73332 * 335.71517 * 15 14 13 23 23 H 1.08998 * 109.47335 * 84.81779 * 1 2 3 24 24 H 1.09005 * 109.47268 * 204.81650 * 1 2 3 25 25 H 1.09003 * 109.47666 * 324.81693 * 1 2 3 26 26 H 0.97002 * 119.99778 * 179.97438 * 6 5 3 27 27 H 1.09000 * 111.00453 * 324.20283 * 13 11 2 28 28 H 1.08999 * 111.00402 * 88.06396 * 13 11 2 29 29 H 1.08994 * 110.36751 * 155.84812 * 14 13 11 30 30 H 1.09007 * 110.36345 * 278.06027 * 14 13 11 31 31 H 1.09000 * 109.47544 * 300.00581 * 18 16 15 32 32 H 1.09004 * 109.46883 * 60.00202 * 18 16 15 33 33 H 1.08995 * 115.54961 * 29.41648 * 19 18 16 34 34 H 1.09005 * 117.49361 * 359.97438 * 20 19 18 35 35 H 1.08997 * 117.50459 * 145.01758 * 20 19 18 36 36 H 1.08996 * 117.49724 * 214.97819 * 21 19 18 37 37 H 1.08998 * 117.50125 * 359.97438 * 21 19 18 38 38 H 1.09000 * 110.06529 * 241.86833 * 22 15 14 39 39 H 1.09004 * 109.84793 * 120.61634 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1835 1.2126 0.3111 5 6 1.5165 2.3529 -0.4054 6 7 0.3566 2.2914 -1.0244 7 14 2.3106 4.0105 -0.0722 8 1 3.6342 4.0690 -0.7429 9 1 1.4398 5.0916 -0.5996 10 1 2.4889 4.1888 1.3913 11 6 2.1975 -1.2687 -0.0006 12 1 3.2729 -1.0914 -0.0130 13 6 1.7720 -2.1476 -1.2063 14 6 2.0756 -3.5711 -0.6759 15 7 1.7186 -3.5253 0.7538 16 6 1.3782 -4.5857 1.5128 17 8 1.1028 -4.4299 2.6836 18 6 1.3397 -5.9648 0.9067 19 6 0.9266 -6.9798 1.9744 20 6 1.9459 -8.0536 2.3604 21 6 0.7167 -8.4283 1.5286 22 6 1.8000 -2.1292 1.2172 23 1 -0.3634 0.0928 -1.0234 24 1 -0.3634 -0.9328 0.4313 25 1 -0.3634 0.8399 0.5921 26 1 -0.0860 3.1068 -1.3074 27 1 0.7100 -2.0290 -1.4209 28 1 2.3745 -1.9219 -2.0862 29 1 1.4640 -4.3082 -1.1961 30 1 3.1337 -3.8035 -0.7972 31 1 0.6179 -5.9829 0.0901 32 1 2.3276 -6.2212 0.5240 33 1 0.2773 -6.5963 2.7613 34 1 2.9107 -8.0371 1.8532 35 1 1.9669 -8.3768 3.4011 36 1 -0.0705 -8.9978 2.0225 37 1 0.8725 -8.6581 0.4746 38 1 2.5550 -2.0378 1.9980 39 1 0.8301 -1.8083 1.5972 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970938974.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:34:40 Heat of formation + Delta-G solvation = -2.930529 kcal Electronic energy + Delta-G solvation = -18778.924142 eV Core-core repulsion = 15915.349666 eV Total energy + Delta-G solvation = -2863.574476 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.11671 -39.14339 -37.79599 -36.52968 -33.50874 -31.53914 -30.59411 -28.88881 -28.08799 -25.22272 -23.81394 -23.19382 -21.83849 -20.83761 -20.08911 -18.95999 -18.12754 -17.59065 -16.86262 -16.49333 -16.02111 -15.45404 -15.20261 -14.92485 -14.59402 -14.48364 -14.22018 -13.70835 -13.36901 -13.13494 -12.98287 -12.81366 -12.55367 -12.41191 -12.33821 -12.27660 -12.25849 -12.10491 -11.81278 -11.48210 -11.27518 -10.97274 -10.74694 -10.62652 -9.63363 -8.85867 -7.84308 -5.30553 1.47287 1.50624 1.56434 1.65182 1.98357 2.51387 2.94414 3.28625 3.53203 3.59301 3.79474 3.86258 4.00347 4.10479 4.20809 4.27637 4.35322 4.47711 4.53261 4.67252 4.67690 4.73658 4.81173 4.83298 4.92630 5.02131 5.06896 5.18877 5.26309 5.30386 5.35067 5.38342 5.41063 5.61299 5.69093 6.28924 6.60520 7.11803 7.18074 7.83231 8.26885 9.19483 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.054858 B = 0.004113 C = 0.004065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.283217 B = 6805.962535 C = 6885.981608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.184 3.816 2 N -0.605 5.605 3 C -0.268 4.268 4 H 0.077 0.923 5 C -0.052 4.052 6 N -0.938 5.938 7 Si 0.971 3.029 8 H -0.272 1.272 9 H -0.295 1.295 10 H -0.283 1.283 11 C 0.165 3.835 12 H 0.083 0.917 13 C -0.143 4.143 14 C 0.108 3.892 15 N -0.616 5.616 16 C 0.518 3.482 17 O -0.596 6.596 18 C -0.091 4.091 19 C -0.165 4.165 20 C -0.181 4.181 21 C -0.160 4.160 22 C 0.097 3.903 23 H 0.010 0.990 24 H 0.018 0.982 25 H 0.014 0.986 26 H 0.248 0.752 27 H 0.057 0.943 28 H 0.090 0.910 29 H 0.105 0.895 30 H 0.096 0.904 31 H 0.118 0.882 32 H 0.120 0.880 33 H 0.085 0.915 34 H 0.107 0.893 35 H 0.090 0.910 36 H 0.099 0.901 37 H 0.115 0.885 38 H 0.051 0.949 39 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.949 -19.495 -1.222 19.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.326 5.326 3 C -0.398 4.398 4 H 0.094 0.906 5 C -0.247 4.247 6 N -0.585 5.585 7 Si 0.799 3.201 8 H -0.197 1.197 9 H -0.222 1.222 10 H -0.209 1.209 11 C 0.056 3.944 12 H 0.101 0.899 13 C -0.183 4.183 14 C -0.014 4.014 15 N -0.350 5.350 16 C 0.309 3.691 17 O -0.477 6.477 18 C -0.131 4.131 19 C -0.184 4.184 20 C -0.218 4.218 21 C -0.197 4.197 22 C -0.028 4.028 23 H 0.028 0.972 24 H 0.036 0.964 25 H 0.033 0.967 26 H 0.057 0.943 27 H 0.076 0.924 28 H 0.108 0.892 29 H 0.123 0.877 30 H 0.114 0.886 31 H 0.136 0.864 32 H 0.138 0.862 33 H 0.103 0.897 34 H 0.125 0.875 35 H 0.108 0.892 36 H 0.117 0.883 37 H 0.133 0.867 38 H 0.070 0.930 39 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 3.685 -19.322 -0.637 19.680 hybrid contribution -0.080 1.570 0.456 1.637 sum 3.604 -17.751 -0.181 18.114 Atomic orbital electron populations 1.20424 0.82897 0.95070 0.97650 1.44057 1.01931 1.01155 1.85489 1.19591 0.96851 0.86011 1.37368 0.90571 1.25722 0.98284 1.01639 0.99021 1.70243 1.18390 1.27165 1.42655 0.85292 0.77745 0.79344 0.77751 1.19706 1.22163 1.20902 1.21487 0.96116 0.84726 0.92053 0.89893 1.23218 1.01807 0.94244 0.99016 1.22530 1.02274 0.97786 0.78809 1.48728 1.67167 1.06497 1.12582 1.21164 0.75346 0.87049 0.85566 1.90653 1.51544 1.86607 1.18898 1.21218 1.05590 0.87689 0.98566 1.21981 1.04753 0.90472 1.01203 1.23144 0.94952 1.02547 1.01132 1.23101 0.99835 0.95213 1.01528 1.22431 1.00112 0.81675 0.98613 0.97165 0.96408 0.96696 0.94261 0.92412 0.89184 0.87706 0.88630 0.86388 0.86174 0.89662 0.87510 0.89193 0.88283 0.86670 0.93022 0.94034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.32 7.54 127.77 0.96 10.28 16 2 N -0.60 -29.93 2.94 -696.17 -2.05 -31.97 16 3 C -0.27 -14.53 9.65 84.03 0.81 -13.72 16 4 H 0.08 3.94 7.82 -2.91 -0.02 3.92 16 5 C -0.05 -2.87 5.11 84.86 0.43 -2.43 16 6 N -0.94 -55.09 10.51 21.65 0.23 -54.86 16 7 Si 0.97 44.80 29.57 68.60 2.03 46.83 16 8 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 9 H -0.30 -13.77 7.11 99.48 0.71 -13.06 16 10 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 11 C 0.16 6.36 3.43 46.18 0.16 6.52 16 12 H 0.08 3.10 7.91 -2.39 -0.02 3.08 16 13 C -0.14 -4.37 6.64 31.99 0.21 -4.16 16 14 C 0.11 2.37 6.69 86.86 0.58 2.95 16 15 N -0.62 -18.50 3.33 -811.04 -2.70 -21.20 16 16 C 0.52 15.74 7.85 87.66 0.69 16.43 16 17 O -0.60 -23.91 15.89 -3.02 -0.05 -23.96 16 18 C -0.09 -1.74 4.99 29.85 0.15 -1.59 16 19 C -0.17 -3.40 5.41 -10.79 -0.06 -3.46 16 20 C -0.18 -2.98 10.18 30.62 0.31 -2.66 16 21 C -0.16 -2.24 10.25 30.62 0.31 -1.93 16 22 C 0.10 3.65 6.41 86.67 0.56 4.20 16 23 H 0.01 0.55 7.42 -2.39 -0.02 0.53 16 24 H 0.02 0.81 6.45 -2.38 -0.02 0.79 16 25 H 0.01 0.81 7.11 -2.39 -0.02 0.79 16 26 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 27 H 0.06 2.00 7.19 -2.39 -0.02 1.98 16 28 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 29 H 0.10 1.64 7.48 -2.39 -0.02 1.63 16 30 H 0.10 1.63 8.14 -2.38 -0.02 1.61 16 31 H 0.12 1.73 7.85 -2.39 -0.02 1.71 16 32 H 0.12 1.64 7.88 -2.38 -0.02 1.62 16 33 H 0.09 2.32 7.31 -2.39 -0.02 2.30 16 34 H 0.11 1.45 8.03 -2.38 -0.02 1.43 16 35 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.04 1.80 6.30 -2.39 -0.02 1.79 16 Total: -1.00 -69.73 313.64 3.60 -66.13 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: 1.02 Total: 8.61 kcal Atomic # 6 Polarization: 5.30 SS G_CDS: 5.12 Total: 10.42 kcal Atomic # 7 Polarization: -103.51 SS G_CDS: -4.52 Total: -108.03 kcal Atomic # 8 Polarization: -23.91 SS G_CDS: -0.05 Total: -23.96 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -69.73 3.60 -66.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970938974.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.204 kcal (2) G-P(sol) polarization free energy of solvation -69.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds