Wall clock time and date at job start Sun Mar 29 2020 23:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21280 * 119.99774 * 2 1 4 4 N 1.34772 * 119.99639 * 179.97438 * 2 1 3 5 5 C 1.46503 * 119.99961 * 180.02562 * 4 2 1 6 6 H 1.09005 * 109.67313 * 34.49037 * 5 4 2 7 7 C 1.53333 * 109.67836 * 273.95366 * 5 4 2 8 8 C 1.52826 * 108.09789 * 176.14300 * 7 5 4 9 9 C 1.50729 * 111.74309 * 58.91320 * 8 7 5 10 10 H 1.08999 * 109.26946 * 186.24049 * 9 8 7 11 11 C 1.53905 * 113.02662 * 65.12771 * 9 8 7 12 12 N 1.47818 * 104.06152 * 198.52302 * 11 9 8 13 13 C 1.36942 * 125.64649 * 203.36951 * 12 11 9 14 14 H 1.08003 * 119.99287 * 179.97438 * 13 12 11 15 15 C 1.38806 * 119.99953 * 359.97438 * 13 12 11 16 16 N 1.31618 * 120.00474 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99755 * 179.97438 * 15 13 12 18 18 H 1.48508 * 109.47225 * 89.99614 * 17 15 13 19 19 H 1.48494 * 109.47175 * 209.99849 * 17 15 13 20 20 H 1.48499 * 109.47105 * 329.99707 * 17 15 13 21 21 C 1.47171 * 108.70227 * 23.35116 * 12 11 9 22 22 C 1.54007 * 113.94290 * 308.68980 * 9 8 7 23 23 H 1.09000 * 112.20706 * 281.29218 * 22 9 8 24 24 C 1.52587 * 109.68328 * 155.00082 * 5 4 2 25 25 H 1.09001 * 109.47554 * 270.00465 * 1 2 3 26 26 H 1.09005 * 109.47071 * 30.00673 * 1 2 3 27 27 H 1.09006 * 109.47045 * 150.00151 * 1 2 3 28 28 H 0.97001 * 120.00359 * 0.02562 * 4 2 1 29 29 H 1.08999 * 109.73608 * 295.79162 * 7 5 4 30 30 H 1.09002 * 109.73876 * 56.44526 * 7 5 4 31 31 H 1.09000 * 109.02254 * 298.33116 * 8 7 5 32 32 H 1.08993 * 109.02446 * 179.49750 * 8 7 5 33 33 H 1.08997 * 110.50694 * 317.16911 * 11 9 8 34 34 H 1.09001 * 110.50636 * 79.87975 * 11 9 8 35 35 H 0.96997 * 120.00630 * 180.02562 * 16 15 13 36 36 H 1.08998 * 109.96144 * 241.57997 * 21 12 11 37 37 H 1.09004 * 109.99585 * 120.35485 * 21 12 11 38 38 H 1.08998 * 109.15976 * 61.67251 * 24 5 4 39 39 H 1.09008 * 109.15693 * 302.49475 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.6458 -1.1673 0.0011 6 1 4.0126 -0.3212 0.5823 7 6 4.1627 -1.0681 -1.4391 8 6 5.6873 -0.9735 -1.3908 9 6 6.2995 -2.1689 -0.7065 10 1 7.3721 -2.0095 -0.5953 11 6 6.0742 -3.4832 -1.4749 12 7 6.3184 -4.5355 -0.4658 13 6 6.6808 -5.8287 -0.7330 14 1 6.8367 -6.5244 0.0783 15 6 6.8478 -6.2454 -2.0465 16 7 6.6573 -5.3978 -3.0352 17 14 7.3428 -8.0094 -2.4109 18 1 6.1241 -8.8444 -2.5624 19 1 8.1317 -8.0524 -3.6682 20 1 8.1661 -8.5338 -1.2918 21 6 6.1080 -3.9629 0.8735 22 6 5.6881 -2.4809 0.6721 23 1 6.0710 -1.8218 1.4513 24 6 4.1595 -2.4693 0.6087 25 1 -0.3634 0.0001 1.0276 26 1 -0.3633 0.8900 -0.5140 27 1 -0.3633 -0.8900 -0.5138 28 1 1.6958 -2.0073 0.0005 29 1 3.8665 -1.9555 -1.9984 30 1 3.7530 -0.1781 -1.9168 31 1 5.9703 -0.0707 -0.8497 32 1 6.0718 -0.9112 -2.4088 33 1 5.0504 -3.5387 -1.8445 34 1 6.7838 -3.5710 -2.2976 35 1 6.7735 -5.6891 -3.9531 36 1 7.0323 -4.0129 1.4490 37 1 5.3177 -4.5065 1.3913 38 1 3.8201 -3.3068 -0.0007 39 1 3.7587 -2.5761 1.6168 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000979447238.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:03:16 Heat of formation + Delta-G solvation = -27.756756 kcal Electronic energy + Delta-G solvation = -19449.185154 eV Core-core repulsion = 16584.534132 eV Total energy + Delta-G solvation = -2864.651022 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.03785 -38.72519 -35.42150 -33.46632 -31.94567 -30.88648 -29.59501 -28.28401 -26.01192 -24.88997 -22.13729 -21.66342 -20.61661 -19.71936 -18.16559 -16.85370 -16.62779 -16.07496 -15.26102 -15.17018 -14.54348 -13.98153 -13.62579 -13.56200 -13.36565 -12.74235 -12.48517 -12.38174 -12.20926 -11.93930 -11.84704 -11.29775 -11.10739 -11.00468 -10.85816 -10.61258 -10.49666 -10.03888 -9.98951 -9.74270 -9.70326 -9.47809 -9.31009 -8.83585 -8.60412 -6.79458 -5.64153 -3.04560 2.67819 3.30418 3.39800 3.45085 3.47001 4.50280 4.78785 5.00134 5.06953 5.13683 5.25875 5.31478 5.48850 5.50171 5.61312 5.64684 5.69571 5.82631 5.88378 5.91701 5.95208 6.10855 6.33486 6.40181 6.48914 6.53286 6.57323 6.65923 6.73262 6.77827 6.91976 7.05578 7.57939 7.59930 7.65954 7.89702 8.28287 8.37192 9.23745 9.84974 10.51169 11.40280 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.034767 B = 0.005240 C = 0.005144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.157940 B = 5342.262646 C = 5441.896740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.508 3.492 3 O -0.553 6.553 4 N -0.724 5.724 5 C 0.145 3.855 6 H 0.084 0.916 7 C -0.125 4.125 8 C -0.096 4.096 9 C -0.114 4.114 10 H 0.063 0.937 11 C 0.165 3.835 12 N -0.606 5.606 13 C -0.222 4.222 14 H 0.076 0.924 15 C -0.011 4.011 16 N -0.922 5.922 17 Si 0.912 3.088 18 H -0.290 1.290 19 H -0.291 1.291 20 H -0.282 1.282 21 C 0.139 3.861 22 C -0.089 4.089 23 H 0.074 0.926 24 C -0.114 4.114 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.079 0.921 28 H 0.399 0.601 29 H 0.071 0.929 30 H 0.058 0.942 31 H 0.052 0.948 32 H 0.064 0.936 33 H 0.015 0.985 34 H 0.100 0.900 35 H 0.251 0.749 36 H 0.019 0.981 37 H 0.022 0.978 38 H 0.076 0.924 39 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.378 8.174 5.596 13.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.295 3.705 3 O -0.431 6.431 4 N -0.374 5.374 5 C 0.041 3.959 6 H 0.102 0.898 7 C -0.163 4.163 8 C -0.134 4.134 9 C -0.134 4.134 10 H 0.082 0.918 11 C 0.041 3.959 12 N -0.332 5.332 13 C -0.350 4.350 14 H 0.094 0.906 15 C -0.206 4.206 16 N -0.571 5.571 17 Si 0.743 3.257 18 H -0.217 1.217 19 H -0.217 1.217 20 H -0.207 1.207 21 C 0.013 3.987 22 C -0.109 4.109 23 H 0.093 0.907 24 C -0.152 4.152 25 H 0.109 0.891 26 H 0.109 0.891 27 H 0.098 0.902 28 H 0.233 0.767 29 H 0.090 0.910 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.033 0.967 34 H 0.118 0.882 35 H 0.062 0.938 36 H 0.037 0.963 37 H 0.040 0.960 38 H 0.095 0.905 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.889 8.772 5.426 13.616 hybrid contribution -0.058 -1.450 -0.188 1.464 sum -8.946 7.322 5.238 12.692 Atomic orbital electron populations 1.21890 0.92189 1.04720 1.04498 1.20764 0.90437 0.83718 0.75604 1.90707 1.70855 1.31469 1.50052 1.46255 1.07896 1.08506 1.74791 1.21027 0.78294 0.99276 0.97335 0.89822 1.21925 0.96335 1.02007 0.96033 1.20765 0.94290 0.97498 1.00856 1.21764 0.99110 0.97260 0.95259 0.91835 1.21787 0.99656 0.82041 0.92457 1.44615 1.80756 1.08068 0.99768 1.19081 1.38477 0.85412 0.92041 0.90630 1.24761 1.02264 0.98136 0.95489 1.69825 1.56051 1.32832 0.98374 0.86109 0.78015 0.84124 0.77473 1.21723 1.21687 1.20748 1.21584 0.96932 0.90877 0.89334 1.22051 0.93567 0.97373 0.97884 0.90723 1.21765 0.96392 0.96634 1.00387 0.89109 0.89129 0.90232 0.76652 0.90992 0.92304 0.92890 0.91771 0.96724 0.88231 0.93817 0.96282 0.95984 0.90543 0.92393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.40 10.30 36.01 0.37 -1.03 16 2 C 0.51 6.53 7.92 -10.99 -0.09 6.44 16 3 O -0.55 -9.56 16.76 5.56 0.09 -9.46 16 4 N -0.72 -8.87 5.09 -53.84 -0.27 -9.14 16 5 C 0.14 2.11 2.43 -67.97 -0.17 1.94 16 6 H 0.08 1.32 7.57 -51.93 -0.39 0.93 16 7 C -0.12 -1.96 5.41 -26.65 -0.14 -2.11 16 8 C -0.10 -1.56 5.37 -27.96 -0.15 -1.71 16 9 C -0.11 -2.15 2.81 -90.76 -0.26 -2.40 16 10 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 11 C 0.17 3.90 4.79 -2.85 -0.01 3.89 16 12 N -0.61 -15.30 3.41 -169.61 -0.58 -15.88 16 13 C -0.22 -6.15 10.28 -15.06 -0.15 -6.30 16 14 H 0.08 2.03 7.83 -52.48 -0.41 1.62 16 15 C -0.01 -0.31 5.49 -17.43 -0.10 -0.41 16 16 N -0.92 -26.71 10.11 55.49 0.56 -26.15 16 17 Si 0.91 21.99 29.55 -169.99 -5.02 16.96 16 18 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 19 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 C 0.14 2.86 6.54 -2.43 -0.02 2.85 16 22 C -0.09 -1.53 3.61 -88.85 -0.32 -1.85 16 23 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 24 C -0.11 -1.74 4.10 -26.94 -0.11 -1.85 16 25 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.40 3.93 8.61 -40.82 -0.35 3.58 16 29 H 0.07 1.23 6.80 -51.93 -0.35 0.87 16 30 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.01 0.37 6.15 -51.93 -0.32 0.05 16 34 H 0.10 2.71 5.96 -51.93 -0.31 2.40 16 35 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 36 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.02 0.45 7.74 -51.93 -0.40 0.05 16 38 H 0.08 1.33 7.16 -51.93 -0.37 0.96 16 39 H 0.06 0.79 8.14 -51.92 -0.42 0.37 16 LS Contribution 302.84 15.07 4.56 4.56 Total: -1.00 -31.91 302.84 -8.07 -39.99 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -6.27 Total: 1.66 kcal Atomic # 6 Polarization: -1.40 SS G_CDS: -1.14 Total: -2.54 kcal Atomic # 7 Polarization: -50.88 SS G_CDS: -0.29 Total: -51.17 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: 0.09 Total: -9.46 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -31.91 -8.07 -39.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000979447238.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.228 kcal (2) G-P(sol) polarization free energy of solvation -31.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds