Wall clock time and date at job start Sun Mar 29 2020 23:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21286 * 120.00302 * 2 1 4 4 N 1.34777 * 119.99846 * 180.02562 * 2 1 3 5 5 C 1.46508 * 119.99799 * 179.97438 * 4 2 1 6 6 H 1.09005 * 109.26182 * 34.50736 * 5 4 2 7 7 C 1.51188 * 109.27080 * 274.99751 * 5 4 2 8 8 C 1.49315 * 116.94672 * 272.62923 * 7 5 4 9 9 C 1.49194 * 121.13689 * 359.73655 * 8 7 5 10 10 H 1.09003 * 108.41788 * 122.31618 * 9 8 7 11 11 C 1.54359 * 111.10997 * 240.53174 * 9 8 7 12 12 N 1.46890 * 106.26890 * 154.31879 * 11 9 8 13 13 C 1.36939 * 125.36909 * 162.06218 * 12 11 9 14 14 H 1.07996 * 119.99610 * 195.93178 * 13 12 11 15 15 C 1.38811 * 119.99578 * 15.93101 * 13 12 11 16 16 N 1.31616 * 120.00321 * 28.93968 * 15 13 12 17 17 Si 1.86797 * 119.99746 * 208.93262 * 15 13 12 18 18 H 1.48499 * 109.47104 * 90.00343 * 17 15 13 19 19 H 1.48498 * 109.47155 * 330.00591 * 17 15 13 20 20 H 1.48500 * 109.47549 * 210.00544 * 17 15 13 21 21 C 1.46791 * 109.26323 * 341.79628 * 12 11 9 22 22 C 1.52592 * 116.85417 * 359.63469 * 9 8 7 23 23 H 1.08998 * 110.46953 * 91.64268 * 22 9 8 24 24 C 1.52797 * 110.38527 * 328.35520 * 22 9 8 25 25 H 1.09003 * 109.47520 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47476 * 299.99748 * 1 2 3 27 27 H 1.09001 * 109.47265 * 59.99812 * 1 2 3 28 28 H 0.97000 * 120.00198 * 359.97438 * 4 2 1 29 29 H 1.08997 * 107.95708 * 150.73867 * 7 5 4 30 30 H 1.09007 * 107.95505 * 34.51027 * 7 5 4 31 31 H 1.09000 * 107.07675 * 236.73792 * 8 7 5 32 32 H 1.09006 * 107.07838 * 122.73032 * 8 7 5 33 33 H 1.09003 * 110.22196 * 35.06855 * 11 9 8 34 34 H 1.09006 * 110.02646 * 273.46301 * 11 9 8 35 35 H 0.97002 * 120.00427 * 6.09762 * 16 15 13 36 36 H 1.09004 * 109.83208 * 120.79534 * 21 12 11 37 37 H 1.09003 * 109.83408 * 241.77395 * 21 12 11 38 38 H 1.09010 * 109.84147 * 183.67669 * 24 22 9 39 39 H 1.08998 * 109.84333 * 304.65190 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.6459 -1.1672 -0.0011 6 1 4.0057 -0.3194 0.5819 7 6 4.1443 -1.0426 -1.4230 8 6 4.3097 -2.3096 -2.1956 9 6 4.0003 -3.6336 -1.5814 10 1 3.2442 -4.1279 -2.1914 11 6 5.2496 -4.5398 -1.5552 12 7 5.0516 -5.4817 -0.4456 13 6 5.7272 -6.6608 -0.2765 14 1 5.3501 -7.4058 0.4083 15 6 6.8968 -6.8982 -0.9855 16 7 7.6617 -5.8909 -1.3496 17 14 7.3852 -8.6474 -1.4225 18 1 6.8062 -9.0081 -2.7416 19 1 6.8721 -9.5784 -0.3855 20 1 8.8654 -8.7465 -1.4879 21 6 4.0198 -4.9568 0.4569 22 6 3.5189 -3.6262 -0.1334 23 1 2.4308 -3.5770 -0.0938 24 6 4.1506 -2.4640 0.6315 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.6958 -2.0073 -0.0005 29 1 5.1091 -0.5360 -1.3977 30 1 3.4484 -0.4050 -1.9684 31 1 5.3460 -2.3467 -2.5314 32 1 3.6951 -2.2208 -3.0914 33 1 6.1450 -3.9423 -1.3836 34 1 5.3365 -5.0831 -2.4963 35 1 7.4564 -4.9922 -1.0480 36 1 3.1939 -5.6648 0.5260 37 1 4.4455 -4.7857 1.4457 38 1 3.8524 -2.5051 1.6792 39 1 5.2365 -2.5160 0.5528 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000979447296.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:03:24 Heat of formation + Delta-G solvation = -24.541060 kcal Electronic energy + Delta-G solvation = -19514.116965 eV Core-core repulsion = 16649.605386 eV Total energy + Delta-G solvation = -2864.511579 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.38941 -38.78218 -35.81856 -33.51198 -32.32688 -31.25088 -29.60279 -28.79776 -26.51789 -24.81389 -22.57251 -21.44053 -20.85226 -20.15903 -17.87968 -17.38517 -16.96667 -15.98354 -15.85281 -15.18012 -14.39725 -14.21336 -13.81432 -13.73340 -13.43995 -13.01843 -12.79049 -12.58396 -12.40605 -12.24082 -11.99808 -11.63983 -11.48294 -11.13030 -10.73164 -10.55477 -10.42997 -10.08553 -10.03695 -9.90541 -9.75759 -9.64426 -9.41608 -9.00378 -8.37714 -6.90794 -6.07153 -3.12772 2.60421 3.24196 3.51982 3.54041 3.70581 4.60397 4.69112 4.83636 4.86601 4.92226 5.02111 5.20122 5.22226 5.29535 5.30844 5.44704 5.58120 5.59769 5.70054 5.74534 5.83031 5.92852 6.14556 6.20803 6.22873 6.31670 6.41398 6.51065 6.60879 6.62832 6.71705 6.83943 7.03682 7.10843 7.51102 7.83590 8.20086 8.51617 9.05689 9.83815 10.38975 11.23541 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.050023 B = 0.005047 C = 0.004864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.609034 B = 5546.299219 C = 5755.376573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.507 3.493 3 O -0.555 6.555 4 N -0.721 5.721 5 C 0.149 3.851 6 H 0.085 0.915 7 C -0.116 4.116 8 C -0.102 4.102 9 C -0.093 4.093 10 H 0.060 0.940 11 C 0.152 3.848 12 N -0.601 5.601 13 C -0.339 4.339 14 H 0.065 0.935 15 C -0.025 4.025 16 N -0.916 5.916 17 Si 1.065 2.935 18 H -0.294 1.294 19 H -0.293 1.293 20 H -0.290 1.290 21 C 0.140 3.860 22 C -0.087 4.087 23 H 0.065 0.935 24 C -0.113 4.113 25 H 0.074 0.926 26 H 0.092 0.908 27 H 0.092 0.908 28 H 0.400 0.600 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.048 0.952 33 H 0.029 0.971 34 H 0.040 0.960 35 H 0.269 0.731 36 H 0.022 0.978 37 H 0.025 0.975 38 H 0.067 0.933 39 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.931 8.821 1.526 15.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.294 3.706 3 O -0.433 6.433 4 N -0.375 5.375 5 C 0.045 3.955 6 H 0.103 0.897 7 C -0.155 4.155 8 C -0.140 4.140 9 C -0.112 4.112 10 H 0.079 0.921 11 C 0.027 3.973 12 N -0.328 5.328 13 C -0.467 4.467 14 H 0.082 0.918 15 C -0.227 4.227 16 N -0.557 5.557 17 Si 0.895 3.105 18 H -0.221 1.221 19 H -0.219 1.219 20 H -0.217 1.217 21 C 0.014 3.986 22 C -0.106 4.106 23 H 0.084 0.916 24 C -0.151 4.151 25 H 0.093 0.907 26 H 0.111 0.889 27 H 0.110 0.890 28 H 0.236 0.764 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.067 0.933 33 H 0.047 0.953 34 H 0.058 0.942 35 H 0.081 0.919 36 H 0.040 0.960 37 H 0.043 0.957 38 H 0.086 0.914 39 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -11.325 8.545 0.711 14.205 hybrid contribution -1.376 0.399 0.774 1.629 sum -12.702 8.944 1.485 15.606 Atomic orbital electron populations 1.21852 0.92156 1.04105 1.05037 1.20789 0.90499 0.83736 0.75557 1.90709 1.70786 1.31528 1.50302 1.46502 1.07747 1.08595 1.74622 1.20594 0.79200 0.99201 0.96485 0.89659 1.20761 1.01616 0.97635 0.95489 1.19859 1.02508 0.93028 0.98582 1.20881 0.99723 0.95282 0.95357 0.92129 1.21542 0.93177 0.90681 0.91930 1.44341 1.43920 1.22211 1.22314 1.19766 1.06129 0.91770 1.28988 0.91750 1.25696 0.91747 1.05531 0.99702 1.70757 1.35421 1.01356 1.48178 0.83513 0.75815 0.74937 0.76218 1.22145 1.21910 1.21665 1.21298 0.92171 0.91477 0.93668 1.21470 0.98196 0.95577 0.95368 0.91640 1.21783 1.02062 0.92624 0.98651 0.90657 0.88948 0.88955 0.76354 0.91682 0.92233 0.92022 0.93313 0.95342 0.94163 0.91888 0.96029 0.95749 0.91408 0.89651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.30 10.39 36.00 0.37 -0.93 16 2 C 0.51 6.12 7.68 -10.99 -0.08 6.04 16 3 O -0.55 -9.09 16.75 5.55 0.09 -8.99 16 4 N -0.72 -8.22 4.90 -54.76 -0.27 -8.49 16 5 C 0.15 1.98 2.77 -68.91 -0.19 1.79 16 6 H 0.09 1.21 7.55 -51.93 -0.39 0.82 16 7 C -0.12 -1.61 5.46 -29.46 -0.16 -1.77 16 8 C -0.10 -1.53 5.40 -30.42 -0.16 -1.69 16 9 C -0.09 -1.60 2.87 -91.99 -0.26 -1.86 16 10 H 0.06 1.03 8.13 -51.93 -0.42 0.61 16 11 C 0.15 3.49 4.70 -3.12 -0.01 3.47 16 12 N -0.60 -15.10 3.30 -171.26 -0.56 -15.66 16 13 C -0.34 -9.60 9.99 -15.06 -0.15 -9.75 16 14 H 0.06 1.83 7.98 -52.49 -0.42 1.41 16 15 C -0.02 -0.71 5.13 -17.43 -0.09 -0.80 16 16 N -0.92 -27.69 12.97 55.49 0.72 -26.97 16 17 Si 1.07 25.52 30.01 -169.99 -5.10 20.42 16 18 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 21 C 0.14 2.82 6.85 -3.39 -0.02 2.80 16 22 C -0.09 -1.36 2.72 -90.44 -0.25 -1.61 16 23 H 0.07 0.85 6.16 -51.93 -0.32 0.53 16 24 C -0.11 -1.63 4.71 -26.91 -0.13 -1.75 16 25 H 0.07 0.41 7.91 -51.93 -0.41 0.00 16 26 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.40 3.84 6.27 -40.82 -0.26 3.58 16 29 H 0.06 0.89 8.12 -51.93 -0.42 0.47 16 30 H 0.06 0.83 7.77 -51.93 -0.40 0.43 16 31 H 0.06 1.00 7.20 -51.93 -0.37 0.62 16 32 H 0.05 0.67 8.09 -51.93 -0.42 0.25 16 33 H 0.03 0.71 5.97 -51.93 -0.31 0.40 16 34 H 0.04 1.02 8.12 -51.93 -0.42 0.60 16 35 H 0.27 8.14 5.93 -40.82 -0.24 7.90 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.02 0.51 7.71 -51.93 -0.40 0.11 16 38 H 0.07 0.90 8.14 -51.92 -0.42 0.48 16 39 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 LS Contribution 301.52 15.07 4.54 4.54 Total: -1.00 -33.09 301.52 -7.84 -40.93 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -6.12 Total: 0.28 kcal Atomic # 6 Polarization: -4.91 SS G_CDS: -1.14 Total: -6.05 kcal Atomic # 7 Polarization: -51.01 SS G_CDS: -0.11 Total: -51.12 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: 0.09 Total: -8.99 kcal Atomic # 14 Polarization: 25.52 SS G_CDS: -5.10 Total: 20.42 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -33.09 -7.84 -40.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000979447296.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.386 kcal (2) G-P(sol) polarization free energy of solvation -33.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds