Wall clock time and date at job start Sun Mar 29 2020 23:03:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21286 * 120.00302 * 2 1 4 4 N 1.34777 * 119.99846 * 180.02562 * 2 1 3 5 5 C 1.46508 * 119.99799 * 179.97438 * 4 2 1 6 6 H 1.09005 * 109.26182 * 34.50736 * 5 4 2 7 7 C 1.51188 * 109.27080 * 274.99751 * 5 4 2 8 8 C 1.49315 * 116.94672 * 272.62923 * 7 5 4 9 9 C 1.49194 * 121.13689 * 359.73655 * 8 7 5 10 10 H 1.09003 * 108.41788 * 122.31618 * 9 8 7 11 11 C 1.54359 * 111.10997 * 240.53174 * 9 8 7 12 12 N 1.46890 * 106.26890 * 154.31879 * 11 9 8 13 13 C 1.36939 * 125.36909 * 162.06218 * 12 11 9 14 14 H 1.07996 * 119.99610 * 195.93178 * 13 12 11 15 15 C 1.38811 * 119.99578 * 15.93101 * 13 12 11 16 16 N 1.31616 * 120.00321 * 28.93968 * 15 13 12 17 17 Si 1.86797 * 119.99746 * 208.93262 * 15 13 12 18 18 H 1.48499 * 109.47104 * 90.00343 * 17 15 13 19 19 H 1.48498 * 109.47155 * 330.00591 * 17 15 13 20 20 H 1.48500 * 109.47549 * 210.00544 * 17 15 13 21 21 C 1.46791 * 109.26323 * 341.79628 * 12 11 9 22 22 C 1.52592 * 116.85417 * 359.63469 * 9 8 7 23 23 H 1.08998 * 110.46953 * 91.64268 * 22 9 8 24 24 C 1.52797 * 110.38527 * 328.35520 * 22 9 8 25 25 H 1.09003 * 109.47520 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47476 * 299.99748 * 1 2 3 27 27 H 1.09001 * 109.47265 * 59.99812 * 1 2 3 28 28 H 0.97000 * 120.00198 * 359.97438 * 4 2 1 29 29 H 1.08997 * 107.95708 * 150.73867 * 7 5 4 30 30 H 1.09007 * 107.95505 * 34.51027 * 7 5 4 31 31 H 1.09000 * 107.07675 * 236.73792 * 8 7 5 32 32 H 1.09006 * 107.07838 * 122.73032 * 8 7 5 33 33 H 1.09003 * 110.22196 * 35.06855 * 11 9 8 34 34 H 1.09006 * 110.02646 * 273.46301 * 11 9 8 35 35 H 0.97002 * 120.00427 * 6.09762 * 16 15 13 36 36 H 1.09004 * 109.83208 * 120.79534 * 21 12 11 37 37 H 1.09003 * 109.83408 * 241.77395 * 21 12 11 38 38 H 1.09010 * 109.84147 * 183.67669 * 24 22 9 39 39 H 1.08998 * 109.84333 * 304.65190 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.6459 -1.1672 -0.0011 6 1 4.0057 -0.3194 0.5819 7 6 4.1443 -1.0426 -1.4230 8 6 4.3097 -2.3096 -2.1956 9 6 4.0003 -3.6336 -1.5814 10 1 3.2442 -4.1279 -2.1914 11 6 5.2496 -4.5398 -1.5552 12 7 5.0516 -5.4817 -0.4456 13 6 5.7272 -6.6608 -0.2765 14 1 5.3501 -7.4058 0.4083 15 6 6.8968 -6.8982 -0.9855 16 7 7.6617 -5.8909 -1.3496 17 14 7.3852 -8.6474 -1.4225 18 1 6.8062 -9.0081 -2.7416 19 1 6.8721 -9.5784 -0.3855 20 1 8.8654 -8.7465 -1.4879 21 6 4.0198 -4.9568 0.4569 22 6 3.5189 -3.6262 -0.1334 23 1 2.4308 -3.5770 -0.0938 24 6 4.1506 -2.4640 0.6315 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.6958 -2.0073 -0.0005 29 1 5.1091 -0.5360 -1.3977 30 1 3.4484 -0.4050 -1.9684 31 1 5.3460 -2.3467 -2.5314 32 1 3.6951 -2.2208 -3.0914 33 1 6.1450 -3.9423 -1.3836 34 1 5.3365 -5.0831 -2.4963 35 1 7.4564 -4.9922 -1.0480 36 1 3.1939 -5.6648 0.5260 37 1 4.4455 -4.7857 1.4457 38 1 3.8524 -2.5051 1.6792 39 1 5.2365 -2.5160 0.5528 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000979447296.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:03:23 Heat of formation + Delta-G solvation = -46.791843 kcal Electronic energy + Delta-G solvation = -19515.081831 eV Core-core repulsion = 16649.605386 eV Total energy + Delta-G solvation = -2865.476445 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.59219 -40.02394 -37.31741 -34.96085 -33.94919 -32.43492 -31.14250 -29.86559 -28.01101 -26.72733 -23.94985 -22.74907 -22.21303 -21.62144 -19.58845 -18.98791 -17.90280 -17.34643 -17.00350 -16.31589 -15.87473 -15.73621 -15.49404 -15.16318 -14.88892 -14.39576 -14.08322 -13.85716 -13.57190 -13.31406 -13.07809 -12.99758 -12.82013 -12.69212 -12.49338 -12.38784 -11.96428 -11.86664 -11.59737 -11.36053 -11.18099 -10.99137 -10.79521 -10.50762 -10.04348 -9.00104 -8.31349 -5.33903 1.56511 1.64136 1.70274 1.81833 2.33682 2.64202 3.16298 3.49777 3.53331 3.65103 3.65813 3.99247 4.00597 4.06452 4.22363 4.29597 4.41207 4.51090 4.55385 4.61053 4.71341 4.77278 4.84912 4.92348 4.99251 5.01583 5.06748 5.11701 5.17779 5.26053 5.35805 5.43797 5.50002 5.59031 5.68941 6.32309 6.64175 6.93349 7.31822 7.72118 8.29817 8.98184 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.050023 B = 0.005047 C = 0.004864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.609034 B = 5546.299219 C = 5755.376573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.503 3.497 3 O -0.603 6.603 4 N -0.712 5.712 5 C 0.158 3.842 6 H 0.077 0.923 7 C -0.111 4.111 8 C -0.094 4.094 9 C -0.077 4.077 10 H 0.070 0.930 11 C 0.158 3.842 12 N -0.624 5.624 13 C -0.349 4.349 14 H 0.060 0.940 15 C -0.079 4.079 16 N -0.945 5.945 17 Si 1.116 2.884 18 H -0.285 1.285 19 H -0.270 1.270 20 H -0.294 1.294 21 C 0.132 3.868 22 C -0.073 4.073 23 H 0.110 0.890 24 C -0.105 4.105 25 H 0.103 0.897 26 H 0.102 0.898 27 H 0.101 0.899 28 H 0.412 0.588 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.042 0.958 32 H 0.068 0.932 33 H 0.001 0.999 34 H 0.004 0.996 35 H 0.255 0.745 36 H 0.031 0.969 37 H 0.019 0.981 38 H 0.084 0.916 39 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.664 8.780 1.770 18.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.293 3.707 3 O -0.485 6.485 4 N -0.366 5.366 5 C 0.053 3.947 6 H 0.095 0.905 7 C -0.149 4.149 8 C -0.132 4.132 9 C -0.096 4.096 10 H 0.089 0.911 11 C 0.032 3.968 12 N -0.351 5.351 13 C -0.478 4.478 14 H 0.078 0.922 15 C -0.275 4.275 16 N -0.588 5.588 17 Si 0.941 3.059 18 H -0.212 1.212 19 H -0.195 1.195 20 H -0.221 1.221 21 C 0.007 3.993 22 C -0.091 4.091 23 H 0.128 0.872 24 C -0.143 4.143 25 H 0.121 0.879 26 H 0.120 0.880 27 H 0.119 0.881 28 H 0.251 0.749 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.061 0.939 32 H 0.087 0.913 33 H 0.019 0.981 34 H 0.022 0.978 35 H 0.066 0.934 36 H 0.049 0.951 37 H 0.037 0.963 38 H 0.103 0.897 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -14.113 8.489 0.976 16.498 hybrid contribution -0.531 0.409 0.746 1.003 sum -14.644 8.898 1.721 17.222 Atomic orbital electron populations 1.21879 0.88255 1.06279 1.05909 1.21610 0.92277 0.82803 0.74039 1.90696 1.72128 1.33202 1.52469 1.46392 1.06694 1.09314 1.74183 1.20335 0.80669 0.98002 0.95695 0.90489 1.20695 1.01697 0.96739 0.95805 1.19772 1.01749 0.92400 0.99302 1.20782 0.96729 0.95190 0.96939 0.91104 1.21443 0.95133 0.90513 0.89690 1.44638 1.44300 1.22028 1.24098 1.20052 1.06123 0.93058 1.28546 0.92191 1.27105 0.92123 1.08422 0.99834 1.70873 1.36711 1.01240 1.49981 0.82835 0.75274 0.70995 0.76806 1.21227 1.19537 1.22064 1.21532 0.91036 0.93880 0.92867 1.21464 1.00598 0.93398 0.93680 0.87246 1.21667 1.00272 0.92721 0.99653 0.87864 0.87952 0.88087 0.74905 0.92089 0.91755 0.93921 0.91329 0.98140 0.97791 0.93389 0.95089 0.96340 0.89713 0.92559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.83 10.39 71.23 0.74 -1.09 16 2 C 0.50 10.68 7.68 87.66 0.67 11.36 16 3 O -0.60 -18.83 16.75 -3.05 -0.05 -18.88 16 4 N -0.71 -13.82 4.90 -445.55 -2.18 -16.00 16 5 C 0.16 3.90 2.77 44.35 0.12 4.03 16 6 H 0.08 2.10 7.55 -2.38 -0.02 2.09 16 7 C -0.11 -2.90 5.46 28.83 0.16 -2.75 16 8 C -0.09 -2.72 5.40 28.21 0.15 -2.57 16 9 C -0.08 -2.56 2.87 -11.68 -0.03 -2.59 16 10 H 0.07 2.24 8.13 -2.39 -0.02 2.22 16 11 C 0.16 7.47 4.70 86.77 0.41 7.87 16 12 N -0.62 -31.85 3.30 -695.76 -2.29 -34.14 16 13 C -0.35 -20.11 9.99 84.03 0.84 -19.27 16 14 H 0.06 3.43 7.98 -2.91 -0.02 3.40 16 15 C -0.08 -4.60 5.13 84.86 0.44 -4.17 16 16 N -0.94 -59.25 12.97 21.65 0.28 -58.97 16 17 Si 1.12 52.01 30.01 68.60 2.06 54.07 16 18 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 19 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 20 H -0.29 -13.79 7.11 99.48 0.71 -13.09 16 21 C 0.13 5.18 6.85 86.64 0.59 5.78 16 22 C -0.07 -2.10 2.72 -10.68 -0.03 -2.13 16 23 H 0.11 2.29 6.16 -2.39 -0.01 2.27 16 24 C -0.11 -2.86 4.71 30.48 0.14 -2.72 16 25 H 0.10 0.58 7.91 -2.39 -0.02 0.57 16 26 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.41 5.93 6.27 -92.71 -0.58 5.34 16 29 H 0.06 1.65 8.12 -2.39 -0.02 1.63 16 30 H 0.06 1.66 7.77 -2.38 -0.02 1.64 16 31 H 0.04 1.40 7.20 -2.39 -0.02 1.38 16 32 H 0.07 1.74 8.09 -2.38 -0.02 1.72 16 33 H 0.00 0.05 5.97 -2.39 -0.01 0.04 16 34 H 0.00 0.20 8.12 -2.38 -0.02 0.18 16 35 H 0.26 16.28 5.93 -92.71 -0.55 15.73 16 36 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.02 0.75 7.71 -2.39 -0.02 0.74 16 38 H 0.08 2.04 8.14 -2.38 -0.02 2.02 16 39 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -74.87 301.52 2.69 -72.18 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: 0.67 Total: 9.99 kcal Atomic # 6 Polarization: -12.45 SS G_CDS: 4.20 Total: -8.25 kcal Atomic # 7 Polarization: -104.91 SS G_CDS: -4.19 Total: -109.11 kcal Atomic # 8 Polarization: -18.83 SS G_CDS: -0.05 Total: -18.88 kcal Atomic # 14 Polarization: 52.01 SS G_CDS: 2.06 Total: 54.07 kcal Total: -74.87 2.69 -72.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000979447296.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.393 kcal (2) G-P(sol) polarization free energy of solvation -74.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds