Wall clock time and date at job start Sun Mar 29 2020 22:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21278 * 119.99880 * 2 1 4 4 N 1.34769 * 119.99853 * 179.97438 * 2 1 3 5 5 C 1.47203 * 126.70570 * 179.97438 * 4 2 1 6 6 C 1.53751 * 106.45932 * 211.35627 * 5 4 2 7 7 C 1.52998 * 112.07037 * 103.40112 * 6 5 4 8 8 C 1.54322 * 109.07571 * 228.10737 * 6 5 4 9 9 N 1.50791 * 103.42930 * 88.74410 * 8 6 5 10 10 C 1.36937 * 127.63194 * 219.61505 * 9 8 6 11 11 H 1.07993 * 120.00573 * 165.02138 * 10 9 8 12 12 C 1.38813 * 119.99792 * 345.02037 * 10 9 8 13 13 N 1.31627 * 119.99950 * 350.65271 * 12 10 9 14 14 Si 1.86804 * 120.00007 * 170.65016 * 12 10 9 15 15 H 1.48500 * 109.46948 * 60.00472 * 14 12 10 16 16 H 1.48501 * 109.46876 * 180.02562 * 14 12 10 17 17 H 1.48494 * 109.47209 * 299.99895 * 14 12 10 18 18 C 1.48112 * 104.52628 * 39.78502 * 9 8 6 19 19 C 1.54318 * 104.70967 * 320.06357 * 18 9 8 20 20 C 1.52995 * 112.07515 * 145.88541 * 19 18 9 21 21 C 1.46555 * 126.34262 * 1.14631 * 4 2 1 22 22 H 1.09001 * 109.47493 * 270.00296 * 1 2 3 23 23 H 1.09004 * 109.47425 * 30.00367 * 1 2 3 24 24 H 1.08999 * 109.47264 * 149.99716 * 1 2 3 25 25 H 1.09005 * 110.06939 * 92.08516 * 5 4 2 26 26 H 1.09004 * 110.06776 * 330.62416 * 5 4 2 27 27 H 1.09003 * 109.46607 * 61.01684 * 7 6 5 28 28 H 1.08994 * 109.47398 * 181.01301 * 7 6 5 29 29 H 1.08998 * 109.46927 * 301.01659 * 7 6 5 30 30 H 1.09005 * 110.38422 * 207.16002 * 8 6 5 31 31 H 1.08999 * 110.38826 * 329.54154 * 8 6 5 32 32 H 0.97003 * 119.99732 * 179.97438 * 13 12 10 33 33 H 1.08998 * 110.39153 * 201.25561 * 18 9 8 34 34 H 1.09000 * 110.39192 * 78.87460 * 18 9 8 35 35 H 1.09005 * 109.47459 * 302.40986 * 20 19 18 36 36 H 1.09001 * 109.47594 * 62.40942 * 20 19 18 37 37 H 1.08998 * 109.47157 * 182.40987 * 20 19 18 38 38 H 1.08992 * 111.17729 * 29.15251 * 21 4 2 39 39 H 1.09005 * 108.53949 * 267.91576 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.6428 -1.3391 0.0001 6 6 3.9281 -2.6410 -0.7664 7 6 4.4404 -2.3736 -2.1831 8 6 4.9112 -3.5035 0.0528 9 7 4.0053 -4.3222 0.9376 10 6 4.1983 -4.6554 2.2517 11 1 3.3755 -5.0356 2.8389 12 6 5.4516 -4.5047 2.8291 13 7 6.4930 -4.2193 2.0764 14 14 5.6602 -4.7067 4.6745 15 1 5.2441 -6.0754 5.0727 16 1 7.0848 -4.4966 5.0374 17 1 4.8177 -3.7081 5.3801 18 6 2.8650 -4.6871 0.0657 19 6 2.5858 -3.4176 -0.7660 20 6 2.1105 -3.7506 -2.1816 21 6 1.5929 -2.5094 -0.0225 22 1 -0.3634 0.0001 1.0277 23 1 -0.3634 0.8900 -0.5139 24 1 -0.3634 -0.8899 -0.5139 25 1 4.0103 -1.4191 1.0232 26 1 4.1183 -0.4970 -0.5029 27 1 5.3751 -1.8151 -2.1319 28 1 4.6112 -3.3218 -2.6927 29 1 3.7000 -1.7933 -2.7337 30 1 5.4906 -4.1492 -0.6072 31 1 5.5732 -2.8688 0.6418 32 1 7.3687 -4.1136 2.4800 33 1 1.9940 -4.9458 0.6678 34 1 3.1363 -5.5168 -0.5871 35 1 2.8582 -4.3673 -2.6804 36 1 1.1671 -4.2942 -2.1298 37 1 1.9674 -2.8276 -2.7434 38 1 0.6307 -2.5091 -0.5343 39 1 1.4704 -2.8518 1.0051 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000982177156.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:55:34 Heat of formation + Delta-G solvation = -7.587663 kcal Electronic energy + Delta-G solvation = -20118.876909 eV Core-core repulsion = 17255.100484 eV Total energy + Delta-G solvation = -2863.776424 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.37071 -38.30084 -34.72890 -32.95565 -31.85732 -30.62496 -29.78959 -26.75301 -25.73772 -25.37685 -24.85302 -22.10194 -20.13328 -19.17175 -17.76219 -16.83506 -16.44513 -15.66023 -15.05747 -14.58843 -14.20126 -14.12321 -13.50369 -13.33985 -13.12243 -12.92046 -12.56598 -12.34781 -12.01470 -11.84341 -11.66082 -11.45641 -11.42168 -11.31941 -10.84850 -10.79342 -10.55421 -10.10288 -10.07051 -9.87023 -9.73811 -9.60165 -9.50544 -8.68110 -8.25628 -6.88166 -5.80249 -3.13984 2.89548 3.37022 3.39586 3.43297 3.43772 4.44723 4.72076 4.86910 5.07199 5.10334 5.31095 5.40311 5.43556 5.53974 5.57576 5.62367 5.72355 5.78177 5.81451 5.89984 6.06202 6.15578 6.21006 6.25646 6.29172 6.37603 6.46100 6.51475 6.56770 6.76175 6.80800 6.91555 7.25342 7.51570 7.68339 7.93896 8.14054 8.44173 9.05767 9.71881 10.48357 11.33875 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.021993 B = 0.007870 C = 0.007016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.798857 B = 3557.047676 C = 3989.977212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.522 3.478 3 O -0.560 6.560 4 N -0.608 5.608 5 C 0.124 3.876 6 C -0.094 4.094 7 C -0.124 4.124 8 C 0.173 3.827 9 N -0.597 5.597 10 C -0.226 4.226 11 H 0.075 0.925 12 C -0.004 4.004 13 N -0.915 5.915 14 Si 0.909 3.091 15 H -0.284 1.284 16 H -0.290 1.290 17 H -0.285 1.285 18 C 0.143 3.857 19 C -0.086 4.086 20 C -0.126 4.126 21 C 0.117 3.883 22 H 0.090 0.910 23 H 0.088 0.912 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.067 0.933 27 H 0.053 0.947 28 H 0.058 0.942 29 H 0.047 0.953 30 H 0.027 0.973 31 H 0.089 0.911 32 H 0.255 0.745 33 H 0.048 0.952 34 H 0.025 0.975 35 H 0.060 0.940 36 H 0.051 0.949 37 H 0.051 0.949 38 H 0.069 0.931 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.242 2.331 -7.730 13.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.311 3.689 3 O -0.440 6.440 4 N -0.341 5.341 5 C 0.002 3.998 6 C -0.096 4.096 7 C -0.182 4.182 8 C 0.047 3.953 9 N -0.321 5.321 10 C -0.354 4.354 11 H 0.092 0.908 12 C -0.201 4.201 13 N -0.561 5.561 14 Si 0.739 3.261 15 H -0.211 1.211 16 H -0.216 1.216 17 H -0.212 1.212 18 C 0.016 3.984 19 C -0.088 4.088 20 C -0.183 4.183 21 C -0.006 4.006 22 H 0.109 0.891 23 H 0.107 0.893 24 H 0.097 0.903 25 H 0.095 0.905 26 H 0.086 0.914 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.067 0.933 30 H 0.045 0.955 31 H 0.108 0.892 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.043 0.957 35 H 0.079 0.921 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.087 0.913 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -9.782 2.945 -7.490 12.667 hybrid contribution 0.161 -0.248 1.002 1.045 sum -9.621 2.696 -6.488 11.914 Atomic orbital electron populations 1.21870 0.92128 1.04326 1.04497 1.20373 0.90125 0.82215 0.76174 1.90688 1.70860 1.30826 1.51618 1.48488 1.08370 1.05623 1.71576 1.22131 0.79520 0.96944 1.01235 1.22507 0.96736 0.94898 0.95457 1.21681 1.00220 1.01124 0.95184 1.22052 0.90616 0.91944 0.90645 1.45497 1.20385 1.58717 1.07494 1.18912 0.94164 1.38365 0.83934 0.90772 1.24844 0.95141 1.02044 0.98112 1.69871 0.98821 1.53889 1.33543 0.86254 0.76837 0.77939 0.85048 1.21072 1.21571 1.21175 1.21619 0.92169 0.92427 0.92224 1.22329 0.94264 0.97113 0.95124 1.21702 1.00591 1.00850 0.95196 1.22050 0.96026 0.81658 1.00840 0.89094 0.89325 0.90322 0.90471 0.91439 0.92765 0.92349 0.93349 0.95474 0.89233 0.93536 0.93388 0.95698 0.92092 0.92979 0.92948 0.91280 0.91022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.90 9.93 36.01 0.36 -1.55 16 2 C 0.52 8.72 7.98 -10.99 -0.09 8.63 16 3 O -0.56 -11.60 17.33 5.56 0.10 -11.50 16 4 N -0.61 -10.32 3.31 -172.16 -0.57 -10.89 16 5 C 0.12 2.35 6.13 -3.27 -0.02 2.33 16 6 C -0.09 -1.67 1.06 -152.33 -0.16 -1.83 16 7 C -0.12 -1.90 7.47 37.16 0.28 -1.62 16 8 C 0.17 3.90 4.89 -0.94 0.00 3.90 16 9 N -0.60 -14.29 3.43 -166.73 -0.57 -14.86 16 10 C -0.23 -6.02 10.36 -15.06 -0.16 -6.18 16 11 H 0.07 1.92 7.85 -52.49 -0.41 1.51 16 12 C 0.00 -0.11 5.42 -17.43 -0.09 -0.21 16 13 N -0.92 -26.14 10.85 55.49 0.60 -25.53 16 14 Si 0.91 21.71 29.56 -169.99 -5.03 16.69 16 15 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 16 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 17 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 18 C 0.14 2.72 6.14 -2.47 -0.02 2.71 16 19 C -0.09 -1.37 1.08 -152.34 -0.16 -1.53 16 20 C -0.13 -1.60 7.46 37.15 0.28 -1.33 16 21 C 0.12 1.77 5.91 -3.63 -0.02 1.75 16 22 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 23 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 24 H 0.08 0.73 6.45 -51.93 -0.34 0.39 16 25 H 0.08 1.70 7.48 -51.93 -0.39 1.31 16 26 H 0.07 1.29 7.61 -51.93 -0.40 0.89 16 27 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 28 H 0.06 0.84 7.16 -51.93 -0.37 0.47 16 29 H 0.05 0.68 7.10 -51.93 -0.37 0.31 16 30 H 0.03 0.65 7.97 -51.93 -0.41 0.23 16 31 H 0.09 2.30 6.11 -51.93 -0.32 1.98 16 32 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 33 H 0.05 0.87 7.71 -51.93 -0.40 0.47 16 34 H 0.03 0.48 7.96 -51.93 -0.41 0.07 16 35 H 0.06 0.78 7.17 -51.93 -0.37 0.41 16 36 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.05 0.64 7.09 -51.93 -0.37 0.27 16 38 H 0.07 0.82 6.26 -51.93 -0.33 0.49 16 39 H 0.07 1.19 7.53 -51.93 -0.39 0.80 16 LS Contribution 301.94 15.07 4.55 4.55 Total: -1.00 -31.01 301.94 -6.83 -37.84 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: -6.10 Total: -1.36 kcal Atomic # 6 Polarization: 4.88 SS G_CDS: 0.19 Total: 5.07 kcal Atomic # 7 Polarization: -50.75 SS G_CDS: -0.54 Total: -51.29 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: 0.10 Total: -11.50 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.03 Total: 16.69 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -31.01 -6.83 -37.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982177156.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.252 kcal (2) G-P(sol) polarization free energy of solvation -31.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds