Wall clock time and date at job start Sun Mar 29 2020 22:55:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21278 * 119.99880 * 2 1 4 4 N 1.34769 * 119.99853 * 179.97438 * 2 1 3 5 5 C 1.47203 * 126.70570 * 179.97438 * 4 2 1 6 6 C 1.53751 * 106.45932 * 211.35627 * 5 4 2 7 7 C 1.52998 * 112.07037 * 103.40112 * 6 5 4 8 8 C 1.54322 * 109.07571 * 228.10737 * 6 5 4 9 9 N 1.50791 * 103.42930 * 88.74410 * 8 6 5 10 10 C 1.36937 * 127.63194 * 219.61505 * 9 8 6 11 11 H 1.07993 * 120.00573 * 165.02138 * 10 9 8 12 12 C 1.38813 * 119.99792 * 345.02037 * 10 9 8 13 13 N 1.31627 * 119.99950 * 350.65271 * 12 10 9 14 14 Si 1.86804 * 120.00007 * 170.65016 * 12 10 9 15 15 H 1.48500 * 109.46948 * 60.00472 * 14 12 10 16 16 H 1.48501 * 109.46876 * 180.02562 * 14 12 10 17 17 H 1.48494 * 109.47209 * 299.99895 * 14 12 10 18 18 C 1.48112 * 104.52628 * 39.78502 * 9 8 6 19 19 C 1.54318 * 104.70967 * 320.06357 * 18 9 8 20 20 C 1.52995 * 112.07515 * 145.88541 * 19 18 9 21 21 C 1.46555 * 126.34262 * 1.14631 * 4 2 1 22 22 H 1.09001 * 109.47493 * 270.00296 * 1 2 3 23 23 H 1.09004 * 109.47425 * 30.00367 * 1 2 3 24 24 H 1.08999 * 109.47264 * 149.99716 * 1 2 3 25 25 H 1.09005 * 110.06939 * 92.08516 * 5 4 2 26 26 H 1.09004 * 110.06776 * 330.62416 * 5 4 2 27 27 H 1.09003 * 109.46607 * 61.01684 * 7 6 5 28 28 H 1.08994 * 109.47398 * 181.01301 * 7 6 5 29 29 H 1.08998 * 109.46927 * 301.01659 * 7 6 5 30 30 H 1.09005 * 110.38422 * 207.16002 * 8 6 5 31 31 H 1.08999 * 110.38826 * 329.54154 * 8 6 5 32 32 H 0.97003 * 119.99732 * 179.97438 * 13 12 10 33 33 H 1.08998 * 110.39153 * 201.25561 * 18 9 8 34 34 H 1.09000 * 110.39192 * 78.87460 * 18 9 8 35 35 H 1.09005 * 109.47459 * 302.40986 * 20 19 18 36 36 H 1.09001 * 109.47594 * 62.40942 * 20 19 18 37 37 H 1.08998 * 109.47157 * 182.40987 * 20 19 18 38 38 H 1.08992 * 111.17729 * 29.15251 * 21 4 2 39 39 H 1.09005 * 108.53949 * 267.91576 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.6428 -1.3391 0.0001 6 6 3.9281 -2.6410 -0.7664 7 6 4.4404 -2.3736 -2.1831 8 6 4.9112 -3.5035 0.0528 9 7 4.0053 -4.3222 0.9376 10 6 4.1983 -4.6554 2.2517 11 1 3.3755 -5.0356 2.8389 12 6 5.4516 -4.5047 2.8291 13 7 6.4930 -4.2193 2.0764 14 14 5.6602 -4.7067 4.6745 15 1 5.2441 -6.0754 5.0727 16 1 7.0848 -4.4966 5.0374 17 1 4.8177 -3.7081 5.3801 18 6 2.8650 -4.6871 0.0657 19 6 2.5858 -3.4176 -0.7660 20 6 2.1105 -3.7506 -2.1816 21 6 1.5929 -2.5094 -0.0225 22 1 -0.3634 0.0001 1.0277 23 1 -0.3634 0.8900 -0.5139 24 1 -0.3634 -0.8899 -0.5139 25 1 4.0103 -1.4191 1.0232 26 1 4.1183 -0.4970 -0.5029 27 1 5.3751 -1.8151 -2.1319 28 1 4.6112 -3.3218 -2.6927 29 1 3.7000 -1.7933 -2.7337 30 1 5.4906 -4.1492 -0.6072 31 1 5.5732 -2.8688 0.6418 32 1 7.3687 -4.1136 2.4800 33 1 1.9940 -4.9458 0.6678 34 1 3.1363 -5.5168 -0.5871 35 1 2.8582 -4.3673 -2.6804 36 1 1.1671 -4.2942 -2.1298 37 1 1.9674 -2.8276 -2.7434 38 1 0.6307 -2.5091 -0.5343 39 1 1.4704 -2.8518 1.0051 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000982177156.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:55:33 Heat of formation + Delta-G solvation = -27.868607 kcal Electronic energy + Delta-G solvation = -20119.756356 eV Core-core repulsion = 17255.100484 eV Total energy + Delta-G solvation = -2864.655872 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.77829 -39.72122 -36.38101 -34.62529 -33.27867 -32.36216 -30.86216 -28.31502 -27.14311 -26.80017 -26.41927 -23.79681 -21.70215 -20.51652 -19.21845 -18.62529 -17.84764 -17.05949 -16.70279 -16.20833 -15.68525 -15.59517 -15.06293 -14.70797 -14.60544 -14.35317 -13.59350 -13.50648 -13.45687 -13.19230 -13.09565 -12.88687 -12.85174 -12.70852 -12.57950 -12.49820 -12.07351 -11.93940 -11.72426 -11.42947 -11.19273 -11.16218 -10.94462 -10.65917 -9.67500 -8.84658 -7.88295 -5.21723 1.44091 1.46962 1.52520 1.61053 2.09500 2.48635 3.30721 3.39916 3.59271 3.64535 3.91256 3.96888 4.24346 4.26155 4.37496 4.42607 4.50564 4.61164 4.66464 4.75619 4.88434 4.90369 4.95087 4.96508 4.99504 5.04329 5.15207 5.19158 5.24433 5.34621 5.39169 5.45336 5.51641 5.63508 5.76852 6.18588 6.65271 7.00582 7.13410 7.71095 8.50736 9.25150 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.021993 B = 0.007870 C = 0.007016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.798857 B = 3557.047676 C = 3989.977212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.513 3.487 3 O -0.609 6.609 4 N -0.609 5.609 5 C 0.129 3.871 6 C -0.085 4.085 7 C -0.117 4.117 8 C 0.179 3.821 9 N -0.621 5.621 10 C -0.229 4.229 11 H 0.080 0.920 12 C -0.063 4.063 13 N -0.946 5.946 14 Si 0.969 3.031 15 H -0.273 1.273 16 H -0.297 1.297 17 H -0.283 1.283 18 C 0.139 3.861 19 C -0.076 4.076 20 C -0.119 4.119 21 C 0.120 3.880 22 H 0.106 0.894 23 H 0.101 0.899 24 H 0.109 0.891 25 H 0.032 0.968 26 H 0.060 0.940 27 H 0.047 0.953 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.007 0.993 31 H 0.047 0.953 32 H 0.246 0.754 33 H 0.059 0.941 34 H 0.028 0.972 35 H 0.059 0.941 36 H 0.079 0.921 37 H 0.066 0.934 38 H 0.118 0.882 39 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.503 1.957 -9.080 16.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.305 3.695 3 O -0.492 6.492 4 N -0.341 5.341 5 C 0.005 3.995 6 C -0.087 4.087 7 C -0.175 4.175 8 C 0.053 3.947 9 N -0.345 5.345 10 C -0.358 4.358 11 H 0.098 0.902 12 C -0.257 4.257 13 N -0.595 5.595 14 Si 0.798 3.202 15 H -0.199 1.199 16 H -0.224 1.224 17 H -0.210 1.210 18 C 0.013 3.987 19 C -0.078 4.078 20 C -0.177 4.177 21 C -0.003 4.003 22 H 0.124 0.876 23 H 0.120 0.880 24 H 0.127 0.873 25 H 0.050 0.950 26 H 0.078 0.922 27 H 0.066 0.934 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.025 0.975 31 H 0.066 0.934 32 H 0.055 0.945 33 H 0.078 0.922 34 H 0.046 0.954 35 H 0.078 0.922 36 H 0.098 0.902 37 H 0.085 0.915 38 H 0.136 0.864 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -13.101 2.543 -8.859 16.018 hybrid contribution 1.164 -0.142 1.438 1.855 sum -11.938 2.401 -7.421 14.260 Atomic orbital electron populations 1.21909 0.87063 1.06511 1.06099 1.21511 0.92370 0.81059 0.74519 1.90667 1.72364 1.32490 1.53650 1.48589 1.07173 1.06865 1.71446 1.21818 0.81589 0.97357 0.98697 1.22349 0.96858 0.93537 0.95945 1.21638 1.00458 1.02004 0.93391 1.21806 0.91171 0.91539 0.90150 1.45755 1.21958 1.59314 1.07466 1.19290 0.94152 1.36788 0.85593 0.90218 1.25592 0.95182 1.03035 1.01882 1.70067 0.98821 1.55797 1.34808 0.85296 0.76094 0.78197 0.80639 1.19896 1.22386 1.20975 1.21838 0.90714 0.94075 0.92053 1.22308 0.93219 0.95124 0.97134 1.21685 1.01794 1.01967 0.92220 1.22154 0.97636 0.80046 1.00424 0.87574 0.88015 0.87279 0.94977 0.92189 0.93403 0.91184 0.91225 0.97468 0.93434 0.94452 0.92240 0.95425 0.92168 0.90167 0.91456 0.86388 0.92773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.86 9.93 71.24 0.71 -2.15 16 2 C 0.51 16.14 7.98 87.66 0.70 16.84 16 3 O -0.61 -25.01 17.33 -3.02 -0.05 -25.06 16 4 N -0.61 -19.71 3.31 -817.00 -2.70 -22.41 16 5 C 0.13 5.02 6.13 86.50 0.53 5.55 16 6 C -0.08 -3.01 1.06 -50.77 -0.05 -3.06 16 7 C -0.12 -3.41 7.47 71.98 0.54 -2.88 16 8 C 0.18 8.43 4.89 85.98 0.42 8.85 16 9 N -0.62 -30.27 3.43 -681.42 -2.34 -32.60 16 10 C -0.23 -12.47 10.36 84.03 0.87 -11.60 16 11 H 0.08 4.13 7.85 -2.91 -0.02 4.11 16 12 C -0.06 -3.57 5.42 84.86 0.46 -3.11 16 13 N -0.95 -56.79 10.85 21.65 0.23 -56.55 16 14 Si 0.97 45.85 29.56 68.60 2.03 47.88 16 15 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 16 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 17 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 18 C 0.14 5.09 6.14 86.52 0.53 5.62 16 19 C -0.08 -2.22 1.08 -50.78 -0.05 -2.27 16 20 C -0.12 -2.46 7.46 71.98 0.54 -1.92 16 21 C 0.12 3.21 5.91 86.62 0.51 3.72 16 22 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 23 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 24 H 0.11 1.33 6.45 -2.39 -0.02 1.32 16 25 H 0.03 1.52 7.48 -2.38 -0.02 1.50 16 26 H 0.06 2.38 7.61 -2.39 -0.02 2.36 16 27 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.07 1.88 7.16 -2.39 -0.02 1.86 16 29 H 0.07 1.75 7.10 -2.39 -0.02 1.74 16 30 H 0.01 0.36 7.97 -2.38 -0.02 0.34 16 31 H 0.05 2.62 6.11 -2.39 -0.01 2.61 16 32 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 33 H 0.06 2.03 7.71 -2.39 -0.02 2.01 16 34 H 0.03 1.02 7.96 -2.39 -0.02 1.00 16 35 H 0.06 1.29 7.17 -2.38 -0.02 1.27 16 36 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.07 1.25 7.09 -2.39 -0.02 1.23 16 38 H 0.12 2.06 6.26 -2.39 -0.01 2.05 16 39 H 0.05 1.67 7.53 -2.38 -0.02 1.65 16 Total: -1.00 -71.96 301.94 3.90 -68.06 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: 1.03 Total: 7.11 kcal Atomic # 6 Polarization: 7.88 SS G_CDS: 5.70 Total: 13.58 kcal Atomic # 7 Polarization: -106.77 SS G_CDS: -4.80 Total: -111.57 kcal Atomic # 8 Polarization: -25.01 SS G_CDS: -0.05 Total: -25.06 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.88 kcal Total: -71.96 3.90 -68.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982177156.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.195 kcal (2) G-P(sol) polarization free energy of solvation -71.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds