Wall clock time and date at job start Sun Mar 29 2020 23:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34782 * 119.99939 * 2 1 4 4 O 1.21282 * 119.99928 * 179.97438 * 3 2 1 5 5 C 1.50698 * 119.99896 * 0.02562 * 3 2 1 6 6 C 1.52998 * 117.49837 * 248.62010 * 5 3 2 7 7 C 1.52999 * 60.00123 * 252.50770 * 6 5 3 8 8 C 1.46497 * 120.00424 * 180.02562 * 2 1 3 9 9 C 1.53047 * 109.45735 * 60.02529 * 8 2 1 10 10 C 1.53196 * 109.31042 * 178.60143 * 9 8 2 11 11 N 1.46921 * 108.76475 * 54.65766 * 10 9 8 12 12 C 1.36936 * 120.62932 * 126.36077 * 11 10 9 13 13 H 1.08005 * 120.00086 * 331.86131 * 12 11 10 14 14 C 1.38815 * 119.99980 * 151.86108 * 12 11 10 15 15 N 1.31618 * 119.99839 * 343.06542 * 14 12 11 16 16 Si 1.86800 * 119.99962 * 163.06718 * 14 12 11 17 17 H 1.48494 * 109.47331 * 90.00002 * 16 14 12 18 18 H 1.48503 * 109.46880 * 210.00163 * 16 14 12 19 19 H 1.48499 * 109.47002 * 329.99599 * 16 14 12 20 20 C 1.46927 * 118.74000 * 306.38017 * 11 10 9 21 21 C 1.53039 * 109.46080 * 299.97494 * 8 2 1 22 22 H 1.08993 * 109.46722 * 89.99789 * 1 2 3 23 23 H 1.08998 * 109.46563 * 209.99665 * 1 2 3 24 24 H 1.08997 * 109.47083 * 329.99511 * 1 2 3 25 25 H 1.08999 * 115.56278 * 34.30715 * 5 3 2 26 26 H 1.09001 * 117.49706 * 359.97438 * 6 5 3 27 27 H 1.08999 * 117.49933 * 145.01967 * 6 5 3 28 28 H 1.08997 * 117.49978 * 252.51431 * 7 6 5 29 29 H 1.08996 * 117.51881 * 107.47851 * 7 6 5 30 30 H 1.08996 * 109.46258 * 179.97438 * 8 2 1 31 31 H 1.08994 * 109.50158 * 298.56922 * 9 8 2 32 32 H 1.09005 * 109.49515 * 58.66730 * 9 8 2 33 33 H 1.08998 * 109.59646 * 294.86566 * 10 9 8 34 34 H 1.09000 * 109.70026 * 174.50917 * 10 9 8 35 35 H 0.97000 * 119.99625 * 179.97438 * 15 14 12 36 36 H 1.08998 * 109.58744 * 293.82572 * 20 11 10 37 37 H 1.08997 * 109.70648 * 173.46366 * 20 11 10 38 38 H 1.08998 * 109.49666 * 301.33335 * 21 8 2 39 39 H 1.09002 * 109.49748 * 61.40167 * 21 8 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3518 1.1672 0.0005 5 6 1.3854 2.4723 0.0006 6 6 1.4601 3.3318 -1.2630 7 6 2.2074 3.7628 0.0006 8 6 2.1976 -1.2686 -0.0006 9 6 1.8282 -2.0701 -1.2510 10 6 2.6222 -3.3802 -1.2659 11 7 2.3851 -4.0909 -0.0021 12 6 1.9513 -5.3897 -0.0028 13 1 1.3618 -5.7617 -0.8278 14 6 2.2693 -6.2283 1.0567 15 7 3.2408 -5.9045 1.8836 16 14 1.3184 -7.8163 1.3090 17 1 1.9834 -8.9152 0.5639 18 1 1.2849 -8.1486 2.7560 19 1 -0.0692 -7.6472 0.8078 20 6 2.6220 -3.3815 1.2626 21 6 1.8283 -2.0713 1.2490 22 1 -0.3632 0.0000 -1.0276 23 1 -0.3632 -0.8900 0.5138 24 1 -0.3633 0.8899 0.5139 25 1 0.4470 2.4734 0.5552 26 1 2.0547 2.9534 -2.0945 27 1 0.5710 3.8982 -1.5397 28 1 1.8098 4.6127 0.5552 29 1 3.2932 3.6678 0.0006 30 1 3.2692 -1.0692 -0.0009 31 1 0.7610 -2.2914 -1.2392 32 1 2.0699 -1.4883 -2.1405 33 1 3.6852 -3.1623 -1.3689 34 1 2.2937 -3.9994 -2.1006 35 1 3.4627 -6.4903 2.6242 36 1 3.6850 -3.1637 1.3659 37 1 2.2927 -3.9995 2.0979 38 1 2.0699 -1.4903 2.1391 39 1 0.7609 -2.2921 1.2373 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001005031780.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:20:32 Heat of formation + Delta-G solvation = 12.976990 kcal Electronic energy + Delta-G solvation = -19238.643865 eV Core-core repulsion = 16375.759191 eV Total energy + Delta-G solvation = -2862.884674 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.10766 -37.75030 -36.01989 -35.04603 -32.42955 -30.23793 -29.61874 -26.82612 -25.67696 -23.92921 -22.57710 -22.17403 -21.49603 -19.12451 -18.68478 -17.39789 -16.76010 -16.00458 -15.31767 -14.85731 -14.51673 -14.19288 -13.65927 -13.58305 -13.04520 -12.90881 -12.69110 -12.54046 -12.33911 -12.08616 -11.68915 -11.46315 -11.12088 -10.80822 -10.71518 -10.70472 -10.61133 -10.32539 -10.20831 -10.07631 -9.75724 -9.66705 -9.42538 -8.52902 -8.26645 -6.67943 -5.78913 -3.21528 2.60953 3.15146 3.37416 3.44319 3.46333 3.77909 4.49488 4.50189 4.65171 4.76707 4.91837 5.25382 5.31409 5.40817 5.41904 5.46116 5.51535 5.60285 5.69166 5.75712 5.83066 5.90276 5.99450 6.09619 6.24364 6.36401 6.50401 6.58997 6.64365 6.78294 6.93008 6.98307 7.34621 7.59144 7.68339 7.79419 8.37129 8.44920 9.20945 9.84309 10.41565 11.29888 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.049270 B = 0.004745 C = 0.004703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.161993 B = 5900.092133 C = 5952.604236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.604 5.604 3 C 0.538 3.462 4 O -0.546 6.546 5 C -0.193 4.193 6 C -0.153 4.153 7 C -0.151 4.151 8 C 0.144 3.856 9 C -0.136 4.136 10 C 0.147 3.853 11 N -0.592 5.592 12 C -0.254 4.254 13 H 0.065 0.935 14 C 0.003 3.997 15 N -0.902 5.902 16 Si 0.902 3.098 17 H -0.287 1.287 18 H -0.290 1.290 19 H -0.279 1.279 20 C 0.174 3.826 21 C -0.145 4.145 22 H 0.054 0.946 23 H 0.076 0.924 24 H 0.066 0.934 25 H 0.123 0.877 26 H 0.098 0.902 27 H 0.102 0.898 28 H 0.100 0.900 29 H 0.107 0.893 30 H 0.094 0.906 31 H 0.060 0.940 32 H 0.051 0.949 33 H 0.020 0.980 34 H 0.057 0.943 35 H 0.254 0.746 36 H 0.020 0.980 37 H 0.090 0.910 38 H 0.050 0.950 39 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.176 15.807 -3.711 17.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.336 5.336 3 C 0.326 3.674 4 O -0.424 6.424 5 C -0.214 4.214 6 C -0.190 4.190 7 C -0.188 4.188 8 C 0.042 3.958 9 C -0.177 4.177 10 C 0.020 3.980 11 N -0.315 5.315 12 C -0.384 4.384 13 H 0.083 0.917 14 C -0.196 4.196 15 N -0.546 5.546 16 Si 0.731 3.269 17 H -0.214 1.214 18 H -0.216 1.216 19 H -0.205 1.205 20 C 0.048 3.952 21 C -0.186 4.186 22 H 0.072 0.928 23 H 0.095 0.905 24 H 0.085 0.915 25 H 0.141 0.859 26 H 0.117 0.883 27 H 0.120 0.880 28 H 0.119 0.881 29 H 0.125 0.875 30 H 0.112 0.888 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.038 0.962 34 H 0.075 0.925 35 H 0.064 0.936 36 H 0.038 0.962 37 H 0.108 0.892 38 H 0.069 0.931 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.477 15.669 -3.566 17.326 hybrid contribution -0.677 -0.874 0.257 1.135 sum -7.154 14.795 -3.310 16.764 Atomic orbital electron populations 1.21759 0.80108 1.03000 1.01658 1.48067 1.06952 1.06217 1.72341 1.19641 0.87347 0.84448 0.75962 1.90675 1.13904 1.87215 1.50560 1.22271 1.02574 0.91133 1.05430 1.22894 1.03040 1.01562 0.91521 1.22934 1.00160 0.95431 1.00290 1.21202 0.97287 0.80954 0.96329 1.22352 1.01351 0.97979 0.95975 1.20869 0.95817 0.90939 0.90338 1.44078 1.77812 1.10189 0.99409 1.19170 1.25963 0.86575 1.06645 0.91682 1.25055 0.96919 0.97662 0.99943 1.70033 1.28236 1.38210 1.18154 0.86312 0.79897 0.83535 0.77112 1.21378 1.21562 1.20500 1.20749 0.95319 0.88660 0.90504 1.22565 1.01568 0.98980 0.95439 0.92777 0.90501 0.91499 0.85936 0.88349 0.87993 0.88136 0.87468 0.88767 0.92105 0.93064 0.96246 0.92459 0.93591 0.96159 0.89161 0.93100 0.92385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.90 9.35 59.85 0.56 1.46 16 2 N -0.60 -9.26 2.76 -173.89 -0.48 -9.74 16 3 C 0.54 8.49 7.46 -10.98 -0.08 8.40 16 4 O -0.55 -10.76 15.59 5.56 0.09 -10.67 16 5 C -0.19 -2.16 5.29 -91.77 -0.49 -2.65 16 6 C -0.15 -1.42 10.23 -26.73 -0.27 -1.70 16 7 C -0.15 -1.52 10.04 -26.73 -0.27 -1.78 16 8 C 0.14 2.64 2.48 -67.89 -0.17 2.47 16 9 C -0.14 -2.45 5.34 -26.61 -0.14 -2.59 16 10 C 0.15 3.16 6.52 -3.71 -0.02 3.13 16 11 N -0.59 -14.92 2.99 -172.32 -0.52 -15.43 16 12 C -0.25 -6.96 9.58 -15.06 -0.14 -7.10 16 13 H 0.07 1.74 7.89 -52.48 -0.41 1.33 16 14 C 0.00 0.08 4.92 -17.43 -0.09 -0.01 16 15 N -0.90 -26.29 11.19 55.49 0.62 -25.66 16 16 Si 0.90 21.55 29.59 -169.99 -5.03 16.52 16 17 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 18 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 C 0.17 4.22 5.30 -3.71 -0.02 4.20 16 21 C -0.15 -2.85 5.31 -26.61 -0.14 -2.99 16 22 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.08 0.93 6.46 -51.93 -0.34 0.59 16 24 H 0.07 0.60 5.99 -51.93 -0.31 0.29 16 25 H 0.12 1.10 6.44 -51.93 -0.33 0.76 16 26 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.11 1.27 7.67 -51.93 -0.40 0.87 16 30 H 0.09 1.98 6.90 -51.93 -0.36 1.62 16 31 H 0.06 1.07 7.72 -51.93 -0.40 0.67 16 32 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 35 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 36 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.09 2.42 6.06 -51.93 -0.31 2.10 16 38 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 39 H 0.06 1.10 6.72 -51.93 -0.35 0.75 16 LS Contribution 308.50 15.07 4.65 4.65 Total: -1.00 -31.54 308.50 -8.09 -39.63 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -6.14 Total: -0.14 kcal Atomic # 6 Polarization: 2.12 SS G_CDS: -1.28 Total: 0.84 kcal Atomic # 7 Polarization: -50.46 SS G_CDS: -0.37 Total: -50.83 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: 0.09 Total: -10.67 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.03 Total: 16.52 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -31.54 -8.09 -39.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001005031780.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.609 kcal (2) G-P(sol) polarization free energy of solvation -31.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds