Wall clock time and date at job start Sun Mar 29 2020 23:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34782 * 119.99939 * 2 1 4 4 O 1.21282 * 119.99928 * 179.97438 * 3 2 1 5 5 C 1.50698 * 119.99896 * 0.02562 * 3 2 1 6 6 C 1.52998 * 117.49837 * 248.62010 * 5 3 2 7 7 C 1.52999 * 60.00123 * 252.50770 * 6 5 3 8 8 C 1.46497 * 120.00424 * 180.02562 * 2 1 3 9 9 C 1.53047 * 109.45735 * 60.02529 * 8 2 1 10 10 C 1.53196 * 109.31042 * 178.60143 * 9 8 2 11 11 N 1.46921 * 108.76475 * 54.65766 * 10 9 8 12 12 C 1.36936 * 120.62932 * 126.36077 * 11 10 9 13 13 H 1.08005 * 120.00086 * 331.86131 * 12 11 10 14 14 C 1.38815 * 119.99980 * 151.86108 * 12 11 10 15 15 N 1.31618 * 119.99839 * 343.06542 * 14 12 11 16 16 Si 1.86800 * 119.99962 * 163.06718 * 14 12 11 17 17 H 1.48494 * 109.47331 * 90.00002 * 16 14 12 18 18 H 1.48503 * 109.46880 * 210.00163 * 16 14 12 19 19 H 1.48499 * 109.47002 * 329.99599 * 16 14 12 20 20 C 1.46927 * 118.74000 * 306.38017 * 11 10 9 21 21 C 1.53039 * 109.46080 * 299.97494 * 8 2 1 22 22 H 1.08993 * 109.46722 * 89.99789 * 1 2 3 23 23 H 1.08998 * 109.46563 * 209.99665 * 1 2 3 24 24 H 1.08997 * 109.47083 * 329.99511 * 1 2 3 25 25 H 1.08999 * 115.56278 * 34.30715 * 5 3 2 26 26 H 1.09001 * 117.49706 * 359.97438 * 6 5 3 27 27 H 1.08999 * 117.49933 * 145.01967 * 6 5 3 28 28 H 1.08997 * 117.49978 * 252.51431 * 7 6 5 29 29 H 1.08996 * 117.51881 * 107.47851 * 7 6 5 30 30 H 1.08996 * 109.46258 * 179.97438 * 8 2 1 31 31 H 1.08994 * 109.50158 * 298.56922 * 9 8 2 32 32 H 1.09005 * 109.49515 * 58.66730 * 9 8 2 33 33 H 1.08998 * 109.59646 * 294.86566 * 10 9 8 34 34 H 1.09000 * 109.70026 * 174.50917 * 10 9 8 35 35 H 0.97000 * 119.99625 * 179.97438 * 15 14 12 36 36 H 1.08998 * 109.58744 * 293.82572 * 20 11 10 37 37 H 1.08997 * 109.70648 * 173.46366 * 20 11 10 38 38 H 1.08998 * 109.49666 * 301.33335 * 21 8 2 39 39 H 1.09002 * 109.49748 * 61.40167 * 21 8 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3518 1.1672 0.0005 5 6 1.3854 2.4723 0.0006 6 6 1.4601 3.3318 -1.2630 7 6 2.2074 3.7628 0.0006 8 6 2.1976 -1.2686 -0.0006 9 6 1.8282 -2.0701 -1.2510 10 6 2.6222 -3.3802 -1.2659 11 7 2.3851 -4.0909 -0.0021 12 6 1.9513 -5.3897 -0.0028 13 1 1.3618 -5.7617 -0.8278 14 6 2.2693 -6.2283 1.0567 15 7 3.2408 -5.9045 1.8836 16 14 1.3184 -7.8163 1.3090 17 1 1.9834 -8.9152 0.5639 18 1 1.2849 -8.1486 2.7560 19 1 -0.0692 -7.6472 0.8078 20 6 2.6220 -3.3815 1.2626 21 6 1.8283 -2.0713 1.2490 22 1 -0.3632 0.0000 -1.0276 23 1 -0.3632 -0.8900 0.5138 24 1 -0.3633 0.8899 0.5139 25 1 0.4470 2.4734 0.5552 26 1 2.0547 2.9534 -2.0945 27 1 0.5710 3.8982 -1.5397 28 1 1.8098 4.6127 0.5552 29 1 3.2932 3.6678 0.0006 30 1 3.2692 -1.0692 -0.0009 31 1 0.7610 -2.2914 -1.2392 32 1 2.0699 -1.4883 -2.1405 33 1 3.6852 -3.1623 -1.3689 34 1 2.2937 -3.9994 -2.1006 35 1 3.4627 -6.4903 2.6242 36 1 3.6850 -3.1637 1.3659 37 1 2.2927 -3.9995 2.0979 38 1 2.0699 -1.4903 2.1391 39 1 0.7609 -2.2921 1.2373 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001005031780.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:20:32 Heat of formation + Delta-G solvation = -6.234923 kcal Electronic energy + Delta-G solvation = -19239.476956 eV Core-core repulsion = 16375.759191 eV Total energy + Delta-G solvation = -2863.717765 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.33484 -39.26126 -37.09883 -36.50753 -34.25911 -31.99034 -31.41983 -27.94046 -27.29676 -25.39340 -23.91876 -23.31647 -23.06163 -20.73301 -19.87123 -18.79897 -18.38808 -17.35374 -16.77294 -16.40455 -15.79600 -15.44458 -15.41578 -15.06425 -14.81393 -14.30116 -14.14564 -13.89492 -13.57557 -13.23406 -13.07993 -13.00154 -12.62852 -12.51986 -12.40532 -12.10563 -12.00904 -11.92865 -11.52493 -11.47874 -11.42821 -11.30316 -10.77500 -10.57986 -9.59877 -8.73620 -7.88992 -5.35651 1.47941 1.48443 1.49133 1.59415 1.97994 2.51225 2.94559 3.27292 3.51479 3.63205 3.84197 3.88886 4.00238 4.04351 4.13937 4.27620 4.37090 4.43364 4.61702 4.68274 4.72802 4.75828 4.81289 4.87368 4.98127 5.02006 5.02455 5.08904 5.11508 5.25301 5.26377 5.42446 5.59251 5.61821 5.66712 6.36737 6.45371 7.11790 7.17494 7.81515 8.35350 9.18430 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.049270 B = 0.004745 C = 0.004703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.161993 B = 5900.092133 C = 5952.604236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.604 5.604 3 C 0.528 3.472 4 O -0.598 6.598 5 C -0.199 4.199 6 C -0.135 4.135 7 C -0.155 4.155 8 C 0.152 3.848 9 C -0.118 4.118 10 C 0.143 3.857 11 N -0.608 5.608 12 C -0.265 4.265 13 H 0.072 0.928 14 C -0.051 4.051 15 N -0.938 5.938 16 Si 0.971 3.029 17 H -0.286 1.286 18 H -0.293 1.293 19 H -0.266 1.266 20 C 0.182 3.818 21 C -0.127 4.127 22 H 0.072 0.928 23 H 0.071 0.929 24 H 0.099 0.901 25 H 0.155 0.845 26 H 0.082 0.918 27 H 0.138 0.862 28 H 0.131 0.869 29 H 0.079 0.921 30 H 0.060 0.940 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.005 0.995 34 H 0.065 0.935 35 H 0.250 0.750 36 H -0.013 1.013 37 H 0.061 0.939 38 H 0.055 0.945 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.226 17.357 -4.574 20.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.334 5.334 3 C 0.318 3.682 4 O -0.480 6.480 5 C -0.219 4.219 6 C -0.172 4.172 7 C -0.192 4.192 8 C 0.048 3.952 9 C -0.158 4.158 10 C 0.017 3.983 11 N -0.331 5.331 12 C -0.395 4.395 13 H 0.090 0.910 14 C -0.246 4.246 15 N -0.584 5.584 16 Si 0.798 3.202 17 H -0.212 1.212 18 H -0.220 1.220 19 H -0.191 1.191 20 C 0.055 3.945 21 C -0.167 4.167 22 H 0.090 0.910 23 H 0.090 0.910 24 H 0.118 0.882 25 H 0.173 0.827 26 H 0.101 0.899 27 H 0.156 0.844 28 H 0.149 0.851 29 H 0.097 0.903 30 H 0.078 0.922 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.023 0.977 34 H 0.083 0.917 35 H 0.059 0.941 36 H 0.005 0.995 37 H 0.079 0.921 38 H 0.073 0.927 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -9.574 17.245 -4.458 20.222 hybrid contribution 0.344 -1.328 0.482 1.454 sum -9.230 15.917 -3.976 18.824 Atomic orbital electron populations 1.22058 0.77194 1.04419 1.03312 1.48055 1.08591 1.04830 1.71926 1.20536 0.87062 0.85936 0.74642 1.90655 1.16450 1.88021 1.52843 1.22305 1.03332 0.88598 1.07693 1.23020 1.03760 1.00214 0.90243 1.23019 0.98791 0.95821 1.01561 1.20789 0.96000 0.82595 0.95776 1.22129 1.01287 0.95960 0.96452 1.21011 0.95689 0.92578 0.89070 1.44325 1.77961 1.10157 1.00689 1.19558 1.25642 0.87523 1.06769 0.91030 1.25870 0.97789 1.01075 0.99875 1.70207 1.29959 1.39520 1.18739 0.85232 0.78996 0.79391 0.76542 1.21240 1.21959 1.19050 1.20504 0.94026 0.90370 0.89585 1.22284 1.01263 0.96609 0.96540 0.90957 0.90996 0.88228 0.82742 0.89934 0.84378 0.85099 0.90272 0.92181 0.90721 0.91273 0.97734 0.91665 0.94075 0.99476 0.92063 0.92664 0.91040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.37 9.35 127.77 1.20 2.57 16 2 N -0.60 -17.40 2.76 -822.44 -2.27 -19.67 16 3 C 0.53 16.05 7.46 87.66 0.65 16.70 16 4 O -0.60 -24.17 15.59 -3.04 -0.05 -24.21 16 5 C -0.20 -3.82 5.29 -11.54 -0.06 -3.88 16 6 C -0.14 -2.05 10.23 30.59 0.31 -1.74 16 7 C -0.15 -2.74 10.04 30.59 0.31 -2.43 16 8 C 0.15 5.55 2.48 45.02 0.11 5.66 16 9 C -0.12 -4.11 5.34 30.68 0.16 -3.95 16 10 C 0.14 6.14 6.52 86.36 0.56 6.70 16 11 N -0.61 -31.19 2.99 -699.09 -2.09 -33.28 16 12 C -0.27 -14.60 9.58 84.03 0.81 -13.79 16 13 H 0.07 3.78 7.89 -2.91 -0.02 3.76 16 14 C -0.05 -2.85 4.92 84.86 0.42 -2.44 16 15 N -0.94 -56.47 11.19 21.65 0.24 -56.23 16 16 Si 0.97 44.62 29.59 68.60 2.03 46.65 16 17 H -0.29 -12.98 7.11 99.48 0.71 -12.28 16 18 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 19 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 20 C 0.18 9.15 5.30 86.36 0.46 9.61 16 21 C -0.13 -4.99 5.31 30.67 0.16 -4.83 16 22 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 23 H 0.07 1.48 6.46 -2.39 -0.02 1.47 16 24 H 0.10 1.27 5.99 -2.39 -0.01 1.26 16 25 H 0.16 1.96 6.44 -2.39 -0.02 1.95 16 26 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.14 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.13 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.08 1.87 7.67 -2.39 -0.02 1.85 16 30 H 0.06 2.63 6.90 -2.39 -0.02 2.61 16 31 H 0.07 2.42 7.72 -2.39 -0.02 2.40 16 32 H 0.07 2.17 8.14 -2.38 -0.02 2.15 16 33 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 34 H 0.06 2.66 7.93 -2.39 -0.02 2.64 16 35 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 36 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 37 H 0.06 3.43 6.06 -2.39 -0.01 3.41 16 38 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.07 2.63 6.72 -2.39 -0.02 2.61 16 Total: -1.00 -71.76 308.50 3.98 -67.78 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: 1.02 Total: 10.79 kcal Atomic # 6 Polarization: 3.09 SS G_CDS: 5.09 Total: 8.18 kcal Atomic # 7 Polarization: -105.06 SS G_CDS: -4.12 Total: -109.18 kcal Atomic # 8 Polarization: -24.17 SS G_CDS: -0.05 Total: -24.21 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -71.76 3.98 -67.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001005031780.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.544 kcal (2) G-P(sol) polarization free energy of solvation -71.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds