Wall clock time and date at job start Sun Mar 29 2020 22:56:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21278 * 120.00158 * 2 1 4 4 N 1.34778 * 120.00343 * 180.02562 * 2 1 3 5 5 C 1.47065 * 120.83680 * 355.16659 * 4 2 1 6 6 C 1.53122 * 109.05892 * 126.61047 * 5 4 2 7 7 C 1.53150 * 109.60934 * 53.99055 * 6 5 4 8 8 C 1.52850 * 109.46956 * 299.26281 * 7 6 5 9 9 H 1.08999 * 109.27548 * 301.78357 * 8 7 6 10 10 C 1.52622 * 110.63265 * 181.38108 * 8 7 6 11 11 N 1.47066 * 108.55895 * 184.53299 * 10 8 7 12 12 C 1.36930 * 120.48010 * 233.30380 * 11 10 8 13 13 H 1.07997 * 120.00005 * 22.25498 * 12 11 10 14 14 C 1.38817 * 120.00039 * 202.26226 * 12 11 10 15 15 N 1.31613 * 120.00357 * 35.31312 * 14 12 11 16 16 Si 1.86797 * 119.99786 * 215.31412 * 14 12 11 17 17 H 1.48497 * 109.47177 * 180.02562 * 16 14 12 18 18 H 1.48496 * 109.47285 * 59.99899 * 16 14 12 19 19 H 1.48498 * 109.47042 * 299.99744 * 16 14 12 20 20 C 1.46871 * 119.04666 * 53.02922 * 11 10 8 21 21 C 1.53314 * 109.11224 * 307.60430 * 20 11 10 22 22 C 1.46722 * 120.84445 * 175.18959 * 4 2 1 23 23 H 1.08991 * 109.53755 * 114.49831 * 22 4 2 24 24 H 1.09006 * 109.46818 * 264.83260 * 1 2 3 25 25 H 1.08993 * 109.47593 * 24.83448 * 1 2 3 26 26 H 1.08999 * 109.47135 * 144.83942 * 1 2 3 27 27 H 1.09008 * 109.54094 * 246.47838 * 5 4 2 28 28 H 1.08997 * 109.54381 * 6.72911 * 5 4 2 29 29 H 1.08992 * 109.45493 * 174.04040 * 6 5 4 30 30 H 1.09002 * 109.44620 * 293.95374 * 6 5 4 31 31 H 1.09003 * 109.50278 * 59.08779 * 7 6 5 32 32 H 1.08996 * 109.50637 * 179.21154 * 7 6 5 33 33 H 1.09003 * 109.61829 * 64.72836 * 10 8 7 34 34 H 1.09004 * 109.54001 * 304.29644 * 10 8 7 35 35 H 0.97002 * 119.99827 * 358.90658 * 15 14 12 36 36 H 1.08994 * 109.53019 * 67.48938 * 20 11 10 37 37 H 1.08998 * 109.53286 * 187.63990 * 20 11 10 38 38 H 1.09000 * 109.55791 * 173.93627 * 21 20 11 39 39 H 1.08996 * 109.55702 * 294.14928 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.4682 -2.4492 0.1053 6 6 1.8935 -3.3549 -1.0538 7 6 3.4199 -3.4781 -1.0765 8 6 4.0397 -2.0956 -1.2785 9 1 3.6682 -1.6673 -2.2094 10 6 5.5617 -2.1923 -1.3393 11 7 6.1140 -0.8319 -1.4242 12 6 6.9873 -0.4981 -2.4246 13 1 7.0074 -1.0736 -3.3383 14 6 7.8470 0.5801 -2.2644 15 7 8.3553 0.8462 -1.0800 16 14 8.2823 1.6532 -3.7301 17 1 9.2109 2.7284 -3.2979 18 1 7.0454 2.2598 -4.2843 19 1 8.9374 0.8240 -4.7735 20 6 5.7108 0.1651 -0.4240 21 6 4.1801 0.2189 -0.3575 22 6 3.6441 -1.1909 -0.1062 23 1 4.0699 -1.5835 0.8171 24 1 -0.3633 -0.0926 1.0236 25 1 -0.3634 0.9325 -0.4316 26 1 -0.3633 -0.8401 -0.5918 27 1 1.7177 -2.9280 1.0523 28 1 0.3935 -2.2742 0.0559 29 1 1.4515 -4.3426 -0.9238 30 1 1.5502 -2.9252 -1.9949 31 1 3.7655 -3.8933 -0.1297 32 1 3.7200 -4.1343 -1.8935 33 1 5.8572 -2.7643 -2.2189 34 1 5.9320 -2.6837 -0.4396 35 1 8.1167 0.2986 -0.3157 36 1 6.1082 -0.1158 0.5513 37 1 6.0989 1.1434 -0.7075 38 1 3.8730 0.8763 0.4558 39 1 3.7870 0.5975 -1.3010 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021475879.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:56:49 Heat of formation + Delta-G solvation = -28.979605 kcal Electronic energy + Delta-G solvation = -20045.977044 eV Core-core repulsion = 17181.272995 eV Total energy + Delta-G solvation = -2864.704049 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.73156 -39.22709 -37.56380 -34.81141 -34.06539 -32.32404 -31.06387 -30.07740 -26.97902 -26.07192 -24.21998 -23.91109 -21.71635 -21.20601 -19.98153 -19.36867 -17.62192 -17.18032 -16.64427 -16.09391 -15.89392 -15.55128 -15.47497 -15.34647 -14.75958 -14.44845 -13.92353 -13.90120 -13.69243 -13.49321 -13.07587 -13.01016 -12.71286 -12.60243 -12.32849 -12.16417 -12.01195 -11.94388 -11.79448 -11.69019 -11.56063 -11.19610 -10.38927 -10.08209 -9.55138 -8.94009 -8.46003 -5.33028 1.51335 1.61092 1.66254 1.79701 2.05948 2.58747 3.10909 3.47401 3.57673 3.74664 3.83769 3.99409 4.08908 4.17897 4.23771 4.39356 4.44940 4.47726 4.57261 4.62315 4.73533 4.76609 4.80447 4.83304 4.89205 5.02040 5.07485 5.12145 5.15470 5.20268 5.32656 5.35493 5.51630 5.64084 5.79505 6.31153 6.54709 6.99193 7.26618 7.75312 8.20033 8.89829 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.027851 B = 0.007034 C = 0.006191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.099857 B = 3979.635536 C = 4521.396278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.492 3.508 3 O -0.592 6.592 4 N -0.610 5.610 5 C 0.099 3.901 6 C -0.127 4.127 7 C -0.109 4.109 8 C -0.099 4.099 9 H 0.046 0.954 10 C 0.154 3.846 11 N -0.619 5.619 12 C -0.372 4.372 13 H 0.052 0.948 14 C -0.073 4.073 15 N -0.929 5.929 16 Si 1.109 2.891 17 H -0.289 1.289 18 H -0.288 1.288 19 H -0.269 1.269 20 C 0.154 3.846 21 C -0.101 4.101 22 C 0.163 3.837 23 H 0.064 0.936 24 H 0.115 0.885 25 H 0.087 0.913 26 H 0.111 0.889 27 H 0.083 0.917 28 H 0.122 0.878 29 H 0.110 0.890 30 H 0.060 0.940 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.053 0.947 34 H 0.020 0.980 35 H 0.253 0.747 36 H 0.003 0.997 37 H 0.037 0.963 38 H 0.076 0.924 39 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.550 -10.607 2.679 22.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.283 3.717 3 O -0.474 6.474 4 N -0.343 5.343 5 C -0.022 4.022 6 C -0.165 4.165 7 C -0.147 4.147 8 C -0.121 4.121 9 H 0.064 0.936 10 C 0.029 3.971 11 N -0.343 5.343 12 C -0.501 4.501 13 H 0.070 0.930 14 C -0.270 4.270 15 N -0.570 5.570 16 Si 0.934 3.066 17 H -0.215 1.215 18 H -0.215 1.215 19 H -0.194 1.194 20 C 0.027 3.973 21 C -0.140 4.140 22 C 0.059 3.941 23 H 0.081 0.919 24 H 0.133 0.867 25 H 0.106 0.894 26 H 0.129 0.871 27 H 0.101 0.899 28 H 0.140 0.860 29 H 0.129 0.871 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.072 0.928 34 H 0.038 0.962 35 H 0.062 0.938 36 H 0.021 0.979 37 H 0.055 0.945 38 H 0.094 0.906 39 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -18.344 -8.788 2.178 20.457 hybrid contribution -0.120 -0.983 0.504 1.111 sum -18.464 -9.772 2.682 21.061 Atomic orbital electron populations 1.21986 0.87839 1.05918 1.06349 1.21837 0.92539 0.82618 0.74694 1.90749 1.70884 1.33768 1.51954 1.48428 1.06175 1.07629 1.72034 1.22177 0.98445 0.81965 0.99591 1.21904 0.94632 1.01362 0.98584 1.21510 0.96310 0.94067 1.02800 1.21769 0.96044 0.97177 0.97062 0.93590 1.20925 0.91914 0.85645 0.98628 1.44431 1.50797 1.06889 1.32212 1.20124 1.17375 1.17336 0.95251 0.93004 1.27103 0.94490 1.01029 1.04397 1.70948 1.38171 1.45649 1.02198 0.82923 0.75938 0.75244 0.72513 1.21469 1.21462 1.19406 1.20951 0.93381 0.92710 0.90219 1.22245 0.94186 0.96411 1.01169 1.20915 0.80172 0.95463 0.97537 0.91854 0.86657 0.89436 0.87093 0.89875 0.86041 0.87129 0.92160 0.90981 0.90929 0.92798 0.96181 0.93784 0.97926 0.94458 0.90588 0.94894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.56 9.30 71.23 0.66 -1.90 16 2 C 0.49 14.39 7.70 87.66 0.67 15.06 16 3 O -0.59 -24.15 12.76 -3.02 -0.04 -24.19 16 4 N -0.61 -16.52 2.97 -795.33 -2.37 -18.89 16 5 C 0.10 1.52 6.30 86.31 0.54 2.07 16 6 C -0.13 -1.98 6.07 30.69 0.19 -1.79 16 7 C -0.11 -2.49 5.24 30.59 0.16 -2.33 16 8 C -0.10 -3.45 2.19 -10.88 -0.02 -3.47 16 9 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 10 C 0.15 6.68 5.84 86.15 0.50 7.19 16 11 N -0.62 -33.61 2.91 -699.74 -2.04 -35.64 16 12 C -0.37 -22.28 9.43 84.04 0.79 -21.49 16 13 H 0.05 3.09 7.99 -2.91 -0.02 3.07 16 14 C -0.07 -4.41 4.40 84.86 0.37 -4.04 16 15 N -0.93 -60.00 12.60 21.65 0.27 -59.73 16 16 Si 1.11 54.32 30.04 68.60 2.06 56.38 16 17 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 18 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 19 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 20 C 0.15 8.24 4.82 86.41 0.42 8.65 16 21 C -0.10 -4.64 3.82 30.67 0.12 -4.52 16 22 C 0.16 5.82 2.63 45.01 0.12 5.94 16 23 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 24 H 0.12 1.26 8.14 -2.38 -0.02 1.24 16 25 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.11 1.06 6.50 -2.39 -0.02 1.05 16 27 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 28 H 0.12 1.00 5.56 -2.39 -0.01 0.99 16 29 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.05 2.32 7.91 -2.39 -0.02 2.30 16 34 H 0.02 0.85 8.14 -2.38 -0.02 0.84 16 35 H 0.25 16.67 7.09 -92.71 -0.66 16.02 16 36 H 0.00 0.15 7.99 -2.39 -0.02 0.13 16 37 H 0.04 2.26 6.26 -2.39 -0.01 2.25 16 38 H 0.08 3.61 6.10 -2.39 -0.01 3.59 16 39 H 0.03 1.67 7.47 -2.39 -0.02 1.65 16 Total: -1.00 -79.26 294.63 3.55 -75.72 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: 1.13 Total: 7.00 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: 4.53 Total: -0.65 kcal Atomic # 7 Polarization: -110.13 SS G_CDS: -4.13 Total: -114.26 kcal Atomic # 8 Polarization: -24.15 SS G_CDS: -0.04 Total: -24.19 kcal Atomic # 14 Polarization: 54.32 SS G_CDS: 2.06 Total: 56.38 kcal Total: -79.26 3.55 -75.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021475879.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.737 kcal (2) G-P(sol) polarization free energy of solvation -79.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds