Wall clock time and date at job start Sun Mar 29 2020 23:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34770 * 120.00007 * 2 1 4 4 O 1.21278 * 119.99849 * 179.97438 * 3 2 1 5 5 C 1.50690 * 120.00212 * 359.97438 * 3 2 1 6 6 C 1.53781 * 113.61788 * 279.14171 * 5 3 2 7 7 C 1.53958 * 87.02189 * 220.04498 * 6 5 3 8 8 C 1.53781 * 87.11047 * 25.36219 * 7 6 5 9 9 C 1.46500 * 119.99866 * 179.97438 * 2 1 3 10 10 H 1.08998 * 110.64612 * 181.68732 * 9 2 1 11 11 C 1.55154 * 110.72211 * 305.02556 * 9 2 1 12 12 C 1.55132 * 101.49119 * 82.69543 * 11 9 2 13 13 N 1.47428 * 104.71757 * 37.29367 * 12 11 9 14 14 C 1.36935 * 125.64875 * 155.82175 * 13 12 11 15 15 H 1.08003 * 120.00312 * 199.12526 * 14 13 12 16 16 C 1.38812 * 119.99625 * 19.11600 * 14 13 12 17 17 N 1.31614 * 120.00374 * 28.60150 * 16 14 13 18 18 Si 1.86802 * 119.99696 * 208.32426 * 16 14 13 19 19 H 1.48506 * 109.47027 * 180.27876 * 18 16 14 20 20 H 1.48496 * 109.47278 * 300.27478 * 18 16 14 21 21 H 1.48498 * 109.47347 * 60.27966 * 18 16 14 22 22 C 1.47019 * 108.70668 * 335.55765 * 13 12 11 23 23 H 1.09007 * 109.46900 * 270.00144 * 1 2 3 24 24 H 1.08999 * 109.46906 * 30.00340 * 1 2 3 25 25 H 1.09002 * 109.47269 * 150.00400 * 1 2 3 26 26 H 1.09005 * 112.84961 * 50.33974 * 5 3 2 27 27 H 1.08997 * 113.61165 * 334.56664 * 6 5 3 28 28 H 1.08998 * 113.61526 * 105.46550 * 6 5 3 29 29 H 1.08997 * 113.53661 * 270.81296 * 7 6 5 30 30 H 1.09002 * 113.74119 * 139.93898 * 7 6 5 31 31 H 1.09000 * 113.61866 * 220.09180 * 8 7 6 32 32 H 1.08999 * 113.61800 * 89.18513 * 8 7 6 33 33 H 1.09000 * 111.01004 * 200.93782 * 11 9 2 34 34 H 1.09001 * 111.00875 * 324.74688 * 11 9 2 35 35 H 1.09002 * 110.49157 * 278.45940 * 12 11 9 36 36 H 1.08994 * 110.34886 * 156.06124 * 12 11 9 37 37 H 0.97003 * 120.00149 * 5.41435 * 17 16 14 38 38 H 1.08996 * 109.88711 * 120.69684 * 22 13 12 39 39 H 1.08999 * 109.88294 * 241.87243 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3517 1.1671 0.0005 5 6 1.3855 2.4722 -0.0006 6 6 0.8841 2.8935 -1.3920 7 6 1.2816 4.3314 -1.0114 8 6 2.2973 3.7100 -0.0382 9 6 2.1975 -1.2687 0.0006 10 1 3.2726 -1.0918 0.0305 11 6 1.7507 -2.1601 1.1893 12 6 0.4679 -2.8184 0.6169 13 7 0.7744 -3.0625 -0.8044 14 6 0.1810 -4.0076 -1.5979 15 1 0.6625 -4.3259 -2.5108 16 6 -1.0393 -4.5568 -1.2289 17 7 -1.8850 -3.8547 -0.5050 18 14 -1.4843 -6.2896 -1.7662 19 1 -2.8337 -6.6361 -1.2520 20 1 -1.4860 -6.3629 -3.2493 21 1 -0.4872 -7.2474 -1.2244 22 6 1.8182 -2.1188 -1.2304 23 1 -0.3633 0.0000 1.0277 24 1 -0.3633 0.8900 -0.5139 25 1 -0.3634 -0.8900 -0.5138 26 1 0.6183 2.5184 0.7724 27 1 1.4721 2.4804 -2.2115 28 1 -0.1887 2.7579 -1.5291 29 1 0.4852 4.8864 -0.5157 30 1 1.7428 4.8895 -1.8262 31 1 2.3637 4.2325 0.9161 32 1 3.2724 3.5205 -0.4869 33 1 2.5076 -2.9090 1.4223 34 1 1.5199 -1.5552 2.0662 35 1 -0.3823 -2.1428 0.7110 36 1 0.2643 -3.7593 1.1281 37 1 -1.6909 -2.9276 -0.2956 38 1 2.6909 -2.6668 -1.5855 39 1 1.4349 -1.4746 -2.0218 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032856763.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:33:37 Heat of formation + Delta-G solvation = 13.167350 kcal Electronic energy + Delta-G solvation = -19559.566300 eV Core-core repulsion = 16696.689880 eV Total energy + Delta-G solvation = -2862.876419 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.41880 -38.37836 -36.87271 -34.49321 -32.26739 -29.23891 -28.34322 -26.86220 -25.83581 -25.70859 -24.06025 -21.33315 -20.25794 -19.50375 -18.60055 -17.58198 -17.26397 -16.16190 -15.56320 -14.92190 -14.50640 -14.43851 -13.73762 -13.36695 -13.24757 -12.67280 -12.59910 -12.52480 -12.24326 -11.96053 -11.87405 -11.70174 -11.23118 -11.01251 -10.77081 -10.65074 -10.62449 -10.51317 -10.38791 -10.24808 -10.01826 -9.56574 -9.34944 -8.41956 -8.31039 -6.95151 -6.14546 -3.19101 2.79104 3.25710 3.48691 3.52964 3.70302 4.43022 4.51785 4.56424 4.60365 4.71493 4.98926 5.21918 5.28036 5.35066 5.41483 5.49008 5.58193 5.61610 5.68560 5.72812 5.76187 5.82270 5.84291 6.00315 6.07483 6.11081 6.19579 6.31585 6.36898 6.48083 6.62103 6.90226 6.96977 7.02290 7.69281 7.79709 8.40114 8.46472 8.98247 9.77689 10.34242 11.18250 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.038463 B = 0.005389 C = 0.005107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.795615 B = 5194.914104 C = 5480.950442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.593 5.593 3 C 0.521 3.479 4 O -0.552 6.552 5 C -0.136 4.136 6 C -0.124 4.124 7 C -0.141 4.141 8 C -0.117 4.117 9 C 0.125 3.875 10 H 0.101 0.899 11 C -0.145 4.145 12 C 0.136 3.864 13 N -0.600 5.600 14 C -0.337 4.337 15 H 0.063 0.937 16 C -0.023 4.023 17 N -0.914 5.914 18 Si 1.064 2.936 19 H -0.285 1.285 20 H -0.293 1.293 21 H -0.294 1.294 22 C 0.126 3.874 23 H 0.052 0.948 24 H 0.064 0.936 25 H 0.099 0.901 26 H 0.110 0.890 27 H 0.085 0.915 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.093 0.907 33 H 0.075 0.925 34 H 0.065 0.935 35 H 0.036 0.964 36 H 0.048 0.952 37 H 0.266 0.734 38 H 0.034 0.966 39 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.928 12.990 1.993 13.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.325 5.325 3 C 0.309 3.691 4 O -0.431 6.431 5 C -0.158 4.158 6 C -0.161 4.161 7 C -0.179 4.179 8 C -0.155 4.155 9 C 0.021 3.979 10 H 0.119 0.881 11 C -0.185 4.185 12 C 0.011 3.989 13 N -0.328 5.328 14 C -0.465 4.465 15 H 0.081 0.919 16 C -0.225 4.225 17 N -0.555 5.555 18 Si 0.893 3.107 19 H -0.211 1.211 20 H -0.220 1.220 21 H -0.221 1.221 22 C 0.000 4.000 23 H 0.071 0.929 24 H 0.083 0.917 25 H 0.117 0.883 26 H 0.128 0.872 27 H 0.103 0.897 28 H 0.094 0.906 29 H 0.100 0.900 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.112 0.888 33 H 0.094 0.906 34 H 0.083 0.917 35 H 0.053 0.947 36 H 0.067 0.933 37 H 0.078 0.922 38 H 0.052 0.948 39 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 3.362 11.696 2.044 12.340 hybrid contribution 0.991 1.076 -0.149 1.470 sum 4.353 12.772 1.895 13.626 Atomic orbital electron populations 1.22106 0.79169 1.04379 1.01773 1.47812 1.07290 1.05482 1.71909 1.20517 0.87797 0.85159 0.75598 1.90631 1.14050 1.87429 1.50968 1.22767 0.99980 0.92645 1.00361 1.22867 1.01597 0.96331 0.95351 1.22859 0.99272 0.96093 0.99636 1.22789 0.98451 0.94239 1.00027 1.22112 0.96742 0.82455 0.96590 0.88059 1.23181 1.00143 0.98540 0.96604 1.21797 0.93297 0.98244 0.85608 1.44568 1.44112 1.38357 1.05747 1.19713 1.03386 1.16152 1.07217 0.91941 1.25738 0.90991 1.05515 1.00223 1.70819 1.33778 1.10093 1.40781 0.83538 0.75901 0.75740 0.75487 1.21096 1.22018 1.22124 1.21675 0.93122 0.91156 0.94080 0.92906 0.91707 0.88282 0.87159 0.89684 0.90585 0.89998 0.91103 0.91237 0.88832 0.90628 0.91653 0.94676 0.93339 0.92237 0.94800 0.95395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.08 8.22 59.85 0.49 1.57 16 2 N -0.59 -10.01 2.82 -171.84 -0.49 -10.50 16 3 C 0.52 8.49 7.20 -10.99 -0.08 8.41 16 4 O -0.55 -10.65 15.28 5.56 0.08 -10.57 16 5 C -0.14 -1.67 2.80 -90.96 -0.25 -1.92 16 6 C -0.12 -1.34 6.85 -25.83 -0.18 -1.52 16 7 C -0.14 -1.28 8.09 -25.83 -0.21 -1.49 16 8 C -0.12 -1.29 7.40 -25.92 -0.19 -1.48 16 9 C 0.12 2.32 3.58 -66.09 -0.24 2.09 16 10 H 0.10 1.91 6.99 -51.93 -0.36 1.54 16 11 C -0.15 -2.68 6.54 -24.46 -0.16 -2.84 16 12 C 0.14 3.04 4.50 -2.41 -0.01 3.03 16 13 N -0.60 -14.88 2.84 -169.93 -0.48 -15.37 16 14 C -0.34 -9.38 10.00 -15.06 -0.15 -9.53 16 15 H 0.06 1.76 7.97 -52.48 -0.42 1.34 16 16 C -0.02 -0.64 5.09 -17.43 -0.09 -0.73 16 17 N -0.91 -26.66 13.01 55.49 0.72 -25.94 16 18 Si 1.06 25.04 30.00 -169.99 -5.10 19.94 16 19 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 22 C 0.13 2.71 6.24 -3.06 -0.02 2.69 16 23 H 0.05 0.77 7.98 -51.92 -0.41 0.35 16 24 H 0.06 0.85 5.66 -51.93 -0.29 0.56 16 25 H 0.10 1.94 5.18 -51.93 -0.27 1.68 16 26 H 0.11 1.18 7.91 -51.93 -0.41 0.77 16 27 H 0.08 1.03 8.09 -51.93 -0.42 0.61 16 28 H 0.08 0.75 7.60 -51.93 -0.39 0.35 16 29 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.09 1.18 7.45 -51.93 -0.39 0.80 16 33 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.04 0.80 4.17 -51.93 -0.22 0.59 16 36 H 0.05 1.20 8.07 -51.93 -0.42 0.78 16 37 H 0.27 7.64 6.18 -40.82 -0.25 7.39 16 38 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.03 0.63 8.04 -51.93 -0.42 0.21 16 LS Contribution 301.96 15.07 4.55 4.55 Total: -1.00 -31.23 301.96 -7.81 -39.03 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -6.01 Total: 0.56 kcal Atomic # 6 Polarization: -0.63 SS G_CDS: -1.09 Total: -1.71 kcal Atomic # 7 Polarization: -51.56 SS G_CDS: -0.25 Total: -51.80 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.08 Total: -10.57 kcal Atomic # 14 Polarization: 25.04 SS G_CDS: -5.10 Total: 19.94 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -31.23 -7.81 -39.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032856763.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.201 kcal (2) G-P(sol) polarization free energy of solvation -31.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds