Wall clock time and date at job start Sun Mar 29 2020 23:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34780 * 119.99735 * 2 1 4 4 O 1.21274 * 119.99964 * 180.02562 * 3 2 1 5 5 C 1.50699 * 120.00078 * 0.02562 * 3 2 1 6 6 C 1.53000 * 109.47439 * 180.02562 * 5 3 2 7 7 C 1.52998 * 117.49711 * 243.62356 * 6 5 3 8 8 C 1.52995 * 117.50188 * 174.99853 * 6 5 3 9 9 C 1.46492 * 120.00263 * 180.02562 * 2 1 3 10 10 H 1.09000 * 110.91896 * 190.27110 * 9 2 1 11 11 C 1.55157 * 111.00697 * 66.36729 * 9 2 1 12 12 C 1.54326 * 103.10330 * 277.51657 * 11 9 2 13 13 N 1.47022 * 107.27064 * 337.71798 * 12 11 9 14 14 C 1.36936 * 125.64366 * 178.97255 * 13 12 11 15 15 H 1.08005 * 119.99353 * 179.97438 * 14 13 12 16 16 C 1.38805 * 120.00447 * 359.97438 * 14 13 12 17 17 N 1.31620 * 119.99915 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00165 * 179.97438 * 16 14 13 19 19 H 1.48493 * 109.47138 * 90.00054 * 18 16 14 20 20 H 1.48505 * 109.47304 * 210.00131 * 18 16 14 21 21 H 1.48498 * 109.47067 * 329.99909 * 18 16 14 22 22 C 1.47427 * 108.70436 * 358.93938 * 13 12 11 23 23 H 1.09006 * 109.47125 * 273.13018 * 1 2 3 24 24 H 1.08997 * 109.47931 * 33.12705 * 1 2 3 25 25 H 1.09005 * 109.47417 * 153.13585 * 1 2 3 26 26 H 1.09007 * 109.46935 * 300.00308 * 5 3 2 27 27 H 1.09001 * 109.47061 * 59.99551 * 5 3 2 28 28 H 1.08997 * 115.54865 * 29.32320 * 6 5 3 29 29 H 1.08997 * 117.49865 * 359.97438 * 7 6 5 30 30 H 1.08999 * 117.49663 * 145.01827 * 7 6 5 31 31 H 1.09004 * 117.49801 * 214.97701 * 8 6 5 32 32 H 1.09007 * 117.49753 * 359.97438 * 8 6 5 33 33 H 1.09003 * 110.72039 * 159.06412 * 11 9 2 34 34 H 1.08995 * 110.71801 * 35.97219 * 11 9 2 35 35 H 1.09005 * 109.87733 * 97.13604 * 12 11 9 36 36 H 1.08994 * 109.87871 * 218.14328 * 12 11 9 37 37 H 0.97000 * 119.99858 * 179.97438 * 17 16 14 38 38 H 1.08990 * 110.36427 * 142.96642 * 22 13 12 39 39 H 1.09003 * 110.36597 * 265.18009 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3516 1.1673 -0.0005 5 6 1.3853 2.4723 0.0006 6 6 2.3794 3.6353 -0.0002 7 6 2.3810 4.5641 1.2157 8 6 1.8108 5.0508 -0.1181 9 6 2.1975 -1.2686 -0.0006 10 1 3.2597 -1.1048 0.1810 11 6 1.9728 -2.0401 -1.3279 12 6 0.6236 -2.7521 -1.0946 13 7 0.4276 -2.8505 0.3591 14 6 -0.6606 -3.4007 0.9822 15 1 -0.7099 -3.4256 2.0608 16 6 -1.7003 -3.9264 0.2276 17 7 -1.6404 -3.8956 -1.0869 18 14 -3.1844 -4.6776 1.0776 19 1 -4.2097 -3.6274 1.3033 20 1 -3.7542 -5.7501 0.2229 21 1 -2.7692 -5.2525 2.3822 22 6 1.5970 -2.2595 1.0349 23 1 -0.3634 0.0561 1.0262 24 1 -0.3635 0.8606 -0.5616 25 1 -0.3634 -0.9168 -0.4644 26 1 0.7582 2.5302 -0.8892 27 1 0.7589 2.5298 0.8908 28 1 3.3362 3.4356 -0.4825 29 1 1.6736 4.3468 2.0159 30 1 3.3391 4.9754 1.5334 31 1 2.3937 5.7824 -0.6777 32 1 0.7283 5.1535 -0.1955 33 1 2.7690 -2.7664 -1.4914 34 1 1.9042 -1.3495 -2.1684 35 1 -0.1841 -2.1705 -1.5391 36 1 0.6492 -3.7483 -1.5359 37 1 -2.3668 -4.2633 -1.6142 38 1 1.2865 -1.7266 1.9335 39 1 2.3219 -3.0341 1.2855 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032858071.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:33:41 Heat of formation + Delta-G solvation = 23.202993 kcal Electronic energy + Delta-G solvation = -19285.223333 eV Core-core repulsion = 16422.782092 eV Total energy + Delta-G solvation = -2862.441241 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.87009 -37.83404 -36.72593 -34.20569 -32.22645 -29.80161 -28.93114 -27.65487 -25.92707 -24.26421 -22.45036 -21.67717 -20.08422 -19.99003 -18.47906 -17.04967 -16.81344 -16.07247 -15.48125 -14.84420 -14.67982 -14.20811 -13.75843 -13.68218 -13.11503 -12.74438 -12.22938 -12.04022 -11.91808 -11.82853 -11.64454 -11.58622 -11.28923 -10.96093 -10.91011 -10.72548 -10.41595 -10.19033 -10.16138 -10.03134 -9.92658 -9.67719 -9.26252 -8.69933 -8.11161 -6.88455 -5.77463 -3.11292 2.95624 3.35557 3.38420 3.42272 3.43603 3.78479 4.45079 4.63894 4.73572 4.87774 5.09595 5.37162 5.41453 5.43463 5.51068 5.55219 5.57801 5.60348 5.70637 5.78593 5.83795 5.92600 6.02816 6.15450 6.22007 6.29624 6.36383 6.51075 6.54627 6.64167 6.72945 7.12564 7.51193 7.53867 7.76353 7.90441 8.18055 8.54419 9.15828 9.75440 10.41597 11.33877 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.032218 B = 0.005272 C = 0.004896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.860055 B = 5310.206481 C = 5717.335247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.590 5.590 3 C 0.512 3.488 4 O -0.556 6.556 5 C -0.108 4.108 6 C -0.136 4.136 7 C -0.179 4.179 8 C -0.183 4.183 9 C 0.123 3.877 10 H 0.098 0.902 11 C -0.156 4.156 12 C 0.174 3.826 13 N -0.604 5.604 14 C -0.227 4.227 15 H 0.077 0.923 16 C -0.006 4.006 17 N -0.922 5.922 18 Si 0.911 3.089 19 H -0.289 1.289 20 H -0.291 1.291 21 H -0.282 1.282 22 C 0.127 3.873 23 H 0.051 0.949 24 H 0.052 0.948 25 H 0.119 0.881 26 H 0.095 0.905 27 H 0.092 0.908 28 H 0.117 0.883 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.067 0.933 34 H 0.061 0.939 35 H 0.051 0.949 36 H 0.043 0.957 37 H 0.253 0.747 38 H 0.043 0.957 39 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.393 12.618 0.892 13.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.321 5.321 3 C 0.300 3.700 4 O -0.435 6.435 5 C -0.148 4.148 6 C -0.155 4.155 7 C -0.216 4.216 8 C -0.220 4.220 9 C 0.018 3.982 10 H 0.116 0.884 11 C -0.196 4.196 12 C 0.050 3.950 13 N -0.331 5.331 14 C -0.356 4.356 15 H 0.095 0.905 16 C -0.202 4.202 17 N -0.570 5.570 18 Si 0.741 3.259 19 H -0.216 1.216 20 H -0.217 1.217 21 H -0.208 1.208 22 C 0.000 4.000 23 H 0.069 0.931 24 H 0.070 0.930 25 H 0.137 0.863 26 H 0.113 0.887 27 H 0.110 0.890 28 H 0.135 0.865 29 H 0.111 0.889 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.112 0.888 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.069 0.931 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 4.801 12.483 0.834 13.400 hybrid contribution -0.999 -0.496 0.420 1.192 sum 3.802 11.987 1.254 12.638 Atomic orbital electron populations 1.22220 0.78450 1.05142 1.01991 1.47740 1.07657 1.05191 1.71517 1.20527 0.87939 0.85420 0.76100 1.90621 1.14114 1.87508 1.51247 1.21228 0.97997 0.91436 1.04139 1.22072 1.01008 0.89501 1.02899 1.23013 1.02683 1.04260 0.91685 1.22989 1.00869 0.97298 1.00840 1.22320 0.96067 0.82706 0.97094 0.88437 1.23270 1.00874 0.99014 0.96404 1.21220 0.90701 0.98240 0.84826 1.44556 1.17620 1.69538 1.01364 1.19033 0.94173 1.31424 0.90926 0.90489 1.24769 0.98655 1.01238 0.95584 1.69960 1.32779 1.50925 1.03301 0.86139 0.82765 0.78674 0.78297 1.21620 1.21716 1.20762 1.21929 0.90498 0.93234 0.94311 0.93066 0.92962 0.86259 0.88655 0.89016 0.86511 0.88908 0.88931 0.88871 0.88834 0.91470 0.91984 0.93147 0.93867 0.93704 0.93894 0.95168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.09 9.14 59.85 0.55 1.64 16 2 N -0.59 -10.28 2.91 -171.19 -0.50 -10.78 16 3 C 0.51 8.54 7.67 -10.98 -0.08 8.45 16 4 O -0.56 -10.82 14.97 5.56 0.08 -10.74 16 5 C -0.11 -1.37 4.58 -27.88 -0.13 -1.50 16 6 C -0.14 -1.64 5.41 -90.62 -0.49 -2.13 16 7 C -0.18 -1.87 10.18 -26.73 -0.27 -2.14 16 8 C -0.18 -1.75 10.25 -26.73 -0.27 -2.02 16 9 C 0.12 2.28 3.66 -65.52 -0.24 2.04 16 10 H 0.10 1.81 7.08 -51.93 -0.37 1.45 16 11 C -0.16 -2.97 6.54 -24.90 -0.16 -3.13 16 12 C 0.17 4.02 4.30 -3.06 -0.01 4.00 16 13 N -0.60 -14.45 2.23 -169.77 -0.38 -14.83 16 14 C -0.23 -5.98 10.28 -15.06 -0.15 -6.13 16 15 H 0.08 1.98 7.83 -52.48 -0.41 1.57 16 16 C -0.01 -0.16 5.49 -17.43 -0.10 -0.26 16 17 N -0.92 -25.70 10.31 55.49 0.57 -25.13 16 18 Si 0.91 21.28 29.55 -169.99 -5.02 16.26 16 19 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 22 C 0.13 2.60 6.41 -2.26 -0.01 2.59 16 23 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 24 H 0.05 0.73 6.57 -51.93 -0.34 0.39 16 25 H 0.12 2.48 3.80 -51.93 -0.20 2.28 16 26 H 0.10 1.08 7.40 -51.92 -0.38 0.70 16 27 H 0.09 1.06 7.84 -51.93 -0.41 0.65 16 28 H 0.12 1.61 7.31 -51.93 -0.38 1.23 16 29 H 0.09 0.91 8.03 -51.93 -0.42 0.50 16 30 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 34 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 35 H 0.05 1.25 5.76 -51.93 -0.30 0.95 16 36 H 0.04 1.12 7.50 -51.93 -0.39 0.73 16 37 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 38 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 39 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 307.78 15.07 4.64 4.64 Total: -1.00 -29.17 307.78 -8.10 -37.27 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -6.11 Total: 1.90 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: -1.38 Total: 1.41 kcal Atomic # 7 Polarization: -50.43 SS G_CDS: -0.31 Total: -50.74 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: 0.08 Total: -10.74 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -29.17 -8.10 -37.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032858071.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.476 kcal (2) G-P(sol) polarization free energy of solvation -29.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.273 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds