Wall clock time and date at job start Sun Mar 29 2020 23:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34769 * 120.00146 * 2 1 4 4 O 1.21283 * 120.00245 * 179.97438 * 3 2 1 5 5 C 1.50701 * 120.00284 * 0.02562 * 3 2 1 6 6 C 1.52997 * 109.47380 * 179.97438 * 5 3 2 7 7 C 1.53006 * 117.49869 * 243.74584 * 6 5 3 8 8 C 1.53006 * 117.50043 * 175.08738 * 6 5 3 9 9 C 1.46496 * 119.99707 * 180.02562 * 2 1 3 10 10 H 1.09002 * 110.88697 * 176.11690 * 9 2 1 11 11 C 1.55155 * 111.00605 * 300.00405 * 9 2 1 12 12 C 1.54323 * 102.94271 * 153.57600 * 11 9 2 13 13 N 1.47020 * 107.27073 * 337.80422 * 12 11 9 14 14 C 1.36941 * 125.64658 * 178.96218 * 13 12 11 15 15 H 1.08004 * 119.99844 * 174.80295 * 14 13 12 16 16 C 1.38811 * 120.00373 * 354.79812 * 14 13 12 17 17 N 1.31625 * 119.99756 * 7.05941 * 16 14 13 18 18 Si 1.86796 * 120.00384 * 187.05466 * 16 14 13 19 19 H 1.48502 * 109.46765 * 94.98678 * 18 16 14 20 20 H 1.48500 * 109.47259 * 214.98533 * 18 16 14 21 21 H 1.48496 * 109.47090 * 334.99243 * 18 16 14 22 22 C 1.47422 * 108.70574 * 358.94476 * 13 12 11 23 23 H 1.09000 * 109.47189 * 89.99443 * 1 2 3 24 24 H 1.08995 * 109.47218 * 209.99796 * 1 2 3 25 25 H 1.08999 * 109.46892 * 329.99955 * 1 2 3 26 26 H 1.09004 * 109.47133 * 59.99297 * 5 3 2 27 27 H 1.09004 * 109.47221 * 299.99845 * 5 3 2 28 28 H 1.08997 * 115.55155 * 29.41312 * 6 5 3 29 29 H 1.08999 * 117.49326 * 359.97438 * 7 6 5 30 30 H 1.08992 * 117.49939 * 145.01838 * 7 6 5 31 31 H 1.08994 * 117.49517 * 214.97788 * 8 6 5 32 32 H 1.09002 * 117.49479 * 359.97259 * 8 6 5 33 33 H 1.09003 * 110.71941 * 271.93398 * 11 9 2 34 34 H 1.08996 * 110.72238 * 35.03367 * 11 9 2 35 35 H 1.09002 * 109.88355 * 97.21961 * 12 11 9 36 36 H 1.09004 * 109.88526 * 218.38890 * 12 11 9 37 37 H 0.96998 * 120.00372 * 180.02562 * 17 16 14 38 38 H 1.09005 * 110.36009 * 265.29033 * 22 13 12 39 39 H 1.08992 * 110.36917 * 142.96984 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3518 1.1671 0.0005 5 6 1.3855 2.4723 0.0006 6 6 2.3798 3.6351 0.0011 7 6 2.3826 4.5617 1.2187 8 6 1.8112 5.0509 -0.1145 9 6 2.1975 -1.2687 -0.0006 10 1 3.2717 -1.0973 -0.0695 11 6 1.8482 -2.1131 1.2534 12 6 2.1062 -3.5589 0.7794 13 7 2.0263 -3.5577 -0.6887 14 6 2.2162 -4.6451 -1.4991 15 1 2.0535 -4.5603 -2.5634 16 6 2.6181 -5.8563 -0.9528 17 7 2.6824 -5.9997 0.3540 18 14 3.0674 -7.2826 -2.0721 19 1 4.5364 -7.2976 -2.2892 20 1 2.6474 -8.5591 -1.4402 21 1 2.3759 -7.1249 -3.3767 22 6 1.7074 -2.1922 -1.1437 23 1 -0.3633 0.0001 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5138 26 1 0.7591 2.5298 0.8908 27 1 0.7585 2.5303 -0.8892 28 1 3.3364 3.4360 -0.4819 29 1 1.6757 4.3430 2.0191 30 1 3.3409 4.9724 1.5364 31 1 2.3939 5.7832 -0.6733 32 1 0.7287 5.1538 -0.1914 33 1 2.5042 -1.8573 2.0855 34 1 0.8033 -1.9763 1.5317 35 1 3.0979 -3.8816 1.0964 36 1 1.3480 -4.2250 1.1913 37 1 2.9635 -6.8459 0.7359 38 1 0.6325 -2.0814 -1.2865 39 1 2.2390 -1.9666 -2.0681 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032858072.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:33:45 Heat of formation + Delta-G solvation = 17.449873 kcal Electronic energy + Delta-G solvation = -18823.184936 eV Core-core repulsion = 15960.494220 eV Total energy + Delta-G solvation = -2862.690715 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.95600 -37.75998 -36.78651 -34.77224 -32.19893 -29.92057 -28.95453 -27.38699 -26.47501 -24.37694 -22.54659 -21.57235 -20.13008 -20.02217 -18.71193 -17.10370 -16.95373 -16.25977 -15.45256 -15.06894 -14.60603 -14.32080 -13.93629 -13.52565 -13.26795 -12.74236 -12.65411 -12.38599 -12.25071 -12.03274 -11.71305 -11.69035 -11.42784 -10.95282 -10.84454 -10.75780 -10.51561 -10.28110 -10.14472 -10.08450 -9.80217 -9.73704 -9.49765 -8.59268 -8.32496 -6.84153 -5.72812 -3.05779 2.80341 3.14592 3.41309 3.46562 3.48212 3.66879 4.48261 4.52229 4.57986 4.76161 4.96336 5.09787 5.32989 5.34810 5.36796 5.44623 5.45435 5.50409 5.58517 5.64283 5.70312 5.74677 5.78383 5.90451 5.93604 6.18054 6.22871 6.31177 6.51012 6.59487 6.71367 6.98494 7.53385 7.60276 7.65029 7.81843 8.24143 8.38365 9.20678 9.80988 10.46569 11.39163 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.052259 B = 0.004149 C = 0.004112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.663089 B = 6746.195683 C = 6808.319595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.603 5.603 3 C 0.513 3.487 4 O -0.542 6.542 5 C -0.108 4.108 6 C -0.139 4.139 7 C -0.179 4.179 8 C -0.182 4.182 9 C 0.122 3.878 10 H 0.106 0.894 11 C -0.153 4.153 12 C 0.179 3.821 13 N -0.603 5.603 14 C -0.230 4.230 15 H 0.079 0.921 16 C -0.006 4.006 17 N -0.919 5.919 18 Si 0.912 3.088 19 H -0.288 1.288 20 H -0.291 1.291 21 H -0.281 1.281 22 C 0.132 3.868 23 H 0.057 0.943 24 H 0.078 0.922 25 H 0.066 0.934 26 H 0.092 0.908 27 H 0.096 0.904 28 H 0.118 0.882 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.050 0.950 36 H 0.043 0.957 37 H 0.253 0.747 38 H 0.021 0.979 39 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.133 18.050 1.380 19.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.336 5.336 3 C 0.301 3.699 4 O -0.419 6.419 5 C -0.148 4.148 6 C -0.157 4.157 7 C -0.216 4.216 8 C -0.219 4.219 9 C 0.019 3.981 10 H 0.124 0.876 11 C -0.192 4.192 12 C 0.054 3.946 13 N -0.330 5.330 14 C -0.358 4.358 15 H 0.096 0.904 16 C -0.203 4.203 17 N -0.567 5.567 18 Si 0.742 3.258 19 H -0.216 1.216 20 H -0.218 1.218 21 H -0.206 1.206 22 C 0.004 3.996 23 H 0.075 0.925 24 H 0.096 0.904 25 H 0.085 0.915 26 H 0.110 0.890 27 H 0.114 0.886 28 H 0.136 0.864 29 H 0.111 0.889 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.111 0.889 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.068 0.932 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.039 0.961 39 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -5.444 17.803 1.405 18.669 hybrid contribution 0.070 -0.853 -0.476 0.980 sum -5.374 16.949 0.929 17.805 Atomic orbital electron populations 1.21778 0.79972 1.03057 1.01937 1.47844 1.06868 1.06121 1.72741 1.20527 0.88091 0.85223 0.76075 1.90675 1.14069 1.87251 1.49945 1.21248 0.98068 0.91476 1.03980 1.22085 1.01091 0.89481 1.03050 1.23031 1.02776 1.04183 0.91599 1.23002 1.00805 0.97233 1.00888 1.22445 0.97484 0.81156 0.97056 0.87631 1.23233 1.00423 0.98695 0.96827 1.21151 1.00995 0.88974 0.83500 1.44390 1.83351 1.03049 1.02236 1.19059 1.39134 0.87562 0.90092 0.90358 1.24833 1.01501 0.97917 0.96004 1.69975 1.53038 1.24785 1.08865 0.86104 0.78413 0.81789 0.79503 1.21551 1.21757 1.20612 1.21742 0.97018 0.85930 0.94863 0.92458 0.90363 0.91492 0.88997 0.88624 0.86393 0.88918 0.88820 0.88788 0.88851 0.91984 0.92174 0.93172 0.93879 0.93701 0.96105 0.94104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.85 8.85 59.85 0.53 1.38 16 2 N -0.60 -9.14 2.91 -171.48 -0.50 -9.64 16 3 C 0.51 7.80 7.67 -10.99 -0.08 7.71 16 4 O -0.54 -10.44 14.95 5.56 0.08 -10.36 16 5 C -0.11 -1.13 4.53 -27.88 -0.13 -1.26 16 6 C -0.14 -1.50 5.41 -90.61 -0.49 -1.99 16 7 C -0.18 -1.65 10.18 -26.69 -0.27 -1.93 16 8 C -0.18 -1.51 10.26 -26.69 -0.27 -1.79 16 9 C 0.12 2.32 3.45 -65.78 -0.23 2.10 16 10 H 0.11 2.26 7.02 -51.93 -0.36 1.90 16 11 C -0.15 -2.93 6.51 -24.90 -0.16 -3.09 16 12 C 0.18 4.39 5.38 -3.07 -0.02 4.37 16 13 N -0.60 -15.66 3.39 -170.07 -0.58 -16.23 16 14 C -0.23 -6.50 10.27 -15.06 -0.15 -6.66 16 15 H 0.08 2.14 7.84 -52.48 -0.41 1.72 16 16 C -0.01 -0.17 5.48 -17.43 -0.10 -0.27 16 17 N -0.92 -27.17 10.36 55.49 0.57 -26.60 16 18 Si 0.91 22.26 29.56 -169.99 -5.02 17.23 16 19 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 20 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 22 C 0.13 2.79 6.79 -2.53 -0.02 2.78 16 23 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 24 H 0.08 0.93 6.41 -51.93 -0.33 0.60 16 25 H 0.07 0.54 6.44 -51.93 -0.33 0.21 16 26 H 0.09 0.79 7.13 -51.93 -0.37 0.42 16 27 H 0.10 0.83 8.11 -51.93 -0.42 0.41 16 28 H 0.12 1.53 7.31 -51.93 -0.38 1.15 16 29 H 0.09 0.77 8.03 -51.93 -0.42 0.36 16 30 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.06 1.04 6.40 -51.93 -0.33 0.71 16 35 H 0.05 1.37 7.30 -51.93 -0.38 0.99 16 36 H 0.04 1.15 7.61 -51.93 -0.40 0.75 16 37 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 38 H 0.02 0.42 7.00 -51.93 -0.36 0.06 16 39 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 310.98 15.07 4.69 4.69 Total: -1.00 -32.40 310.98 -8.32 -40.71 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: -6.17 Total: -1.16 kcal Atomic # 6 Polarization: 2.75 SS G_CDS: -1.39 Total: 1.36 kcal Atomic # 7 Polarization: -51.97 SS G_CDS: -0.50 Total: -52.47 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: 0.08 Total: -10.36 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -32.40 -8.32 -40.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032858072.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.162 kcal (2) G-P(sol) polarization free energy of solvation -32.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds