Wall clock time and date at job start Sun Mar 29 2020 22:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46499 * 109.47008 * 2 1 4 4 C 1.34785 * 119.99606 * 269.23015 * 3 2 1 5 5 O 1.21277 * 119.99813 * 179.97438 * 4 3 2 6 6 C 1.50696 * 120.00069 * 0.02562 * 4 3 2 7 7 C 1.53001 * 117.49876 * 248.74816 * 6 4 3 8 8 C 1.53002 * 117.49940 * 180.08703 * 6 4 3 9 9 C 1.46493 * 120.00486 * 89.23126 * 3 2 1 10 10 H 1.09006 * 110.88897 * 182.84343 * 9 3 2 11 11 C 1.55402 * 110.92378 * 58.97913 * 9 3 2 12 12 C 1.54328 * 102.82479 * 277.25285 * 11 9 3 13 13 N 1.47019 * 107.40431 * 337.97318 * 12 11 9 14 14 C 1.36939 * 125.64997 * 178.89561 * 13 12 11 15 15 H 1.07998 * 119.99561 * 179.97438 * 14 13 12 16 16 C 1.38811 * 120.00090 * 359.97438 * 14 13 12 17 17 N 1.31618 * 119.99891 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00104 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47194 * 0.02562 * 18 16 14 20 20 H 1.48496 * 109.47070 * 120.00184 * 18 16 14 21 21 H 1.48502 * 109.47021 * 240.00417 * 18 16 14 22 22 C 1.47421 * 108.70130 * 358.86757 * 13 12 11 23 23 H 1.08995 * 109.47478 * 300.00296 * 1 2 3 24 24 H 1.09000 * 109.47436 * 60.00620 * 1 2 3 25 25 H 1.09005 * 109.46917 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47478 * 239.99704 * 2 1 3 27 27 H 1.08999 * 109.46912 * 119.99343 * 2 1 3 28 28 H 1.09004 * 115.55027 * 34.41473 * 6 4 3 29 29 H 1.08996 * 117.49898 * 359.97438 * 7 6 4 30 30 H 1.08999 * 117.50106 * 145.02325 * 7 6 4 31 31 H 1.09001 * 117.49701 * 214.98246 * 8 6 4 32 32 H 1.08999 * 117.49695 * 359.97215 * 8 6 4 33 33 H 1.08994 * 110.69858 * 158.96799 * 11 9 3 34 34 H 1.08999 * 110.85581 * 35.61190 * 11 9 3 35 35 H 1.09007 * 109.88392 * 218.48182 * 12 11 9 36 36 H 1.08999 * 109.88226 * 97.47573 * 12 11 9 37 37 H 0.96999 * 120.00120 * 179.97438 * 17 16 14 38 38 H 1.09001 * 110.36810 * 142.96294 * 22 13 12 39 39 H 1.09005 * 110.36733 * 265.28582 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.2576 2.0113 -1.1672 5 8 2.6614 3.1549 -1.1673 6 6 2.0224 1.2952 -2.4721 7 6 3.2497 0.9380 -3.3131 8 6 2.3147 2.0637 -3.7624 9 6 2.2464 2.0776 1.2685 10 1 2.5593 3.1074 1.0958 11 6 3.2848 1.3177 2.1398 12 6 2.4281 0.2328 2.8258 13 7 1.0329 0.6960 2.8050 14 6 -0.0438 0.0082 3.2981 15 1 -1.0331 0.4368 3.2350 16 6 0.1364 -1.2396 3.8788 17 7 1.3422 -1.7616 3.9560 18 14 -1.3322 -2.1774 4.5519 19 1 -2.5668 -1.3787 4.3447 20 1 -1.4581 -3.4757 3.8421 21 1 -1.1391 -2.4236 6.0036 22 6 0.9850 2.0237 2.1662 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8899 27 1 1.8932 -0.5137 0.8900 28 1 1.1857 0.5967 -2.4809 29 1 4.2271 1.2213 -2.9227 30 1 3.2201 0.0048 -3.8755 31 1 1.6705 1.8706 -4.6202 32 1 2.6767 3.0874 -3.6674 33 1 3.7281 1.9840 2.8797 34 1 4.0558 0.8637 1.5172 35 1 2.7579 0.0962 3.8557 36 1 2.5148 -0.7074 2.2812 37 1 1.4682 -2.6334 4.3621 38 1 0.0840 2.1210 1.5605 39 1 1.0226 2.8094 2.9208 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033731072.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:49 Heat of formation + Delta-G solvation = 30.207951 kcal Electronic energy + Delta-G solvation = -19971.836591 eV Core-core repulsion = 17109.699108 eV Total energy + Delta-G solvation = -2862.137484 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.07325 -37.89301 -35.83319 -34.46004 -32.34475 -30.22169 -28.86913 -27.54816 -24.84489 -24.07911 -22.43595 -22.35386 -20.13671 -20.08818 -18.34767 -17.33653 -16.97905 -15.91788 -15.13848 -14.71124 -14.43355 -14.13795 -13.74053 -13.49500 -12.75814 -12.68343 -12.31321 -12.01731 -11.93733 -11.79693 -11.56083 -11.11477 -10.96808 -10.88486 -10.78812 -10.57229 -10.49494 -10.31381 -10.13611 -10.05863 -9.83050 -9.66827 -9.23259 -8.65488 -8.12360 -6.85011 -5.76329 -3.09099 2.77104 3.35347 3.38190 3.42877 3.44371 3.94743 4.45860 4.69748 4.84532 4.93595 5.19421 5.39361 5.44267 5.51345 5.56663 5.62249 5.70124 5.77055 5.89366 5.96297 6.02411 6.07540 6.12214 6.23061 6.34713 6.43980 6.49740 6.53418 6.65168 6.74101 7.11892 7.19462 7.52364 7.53880 7.77728 7.94020 8.19390 8.56389 9.16984 9.76977 10.43147 11.35304 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.032409 B = 0.006591 C = 0.006111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.741677 B = 4247.342455 C = 4581.146722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.095 3.905 3 N -0.580 5.580 4 C 0.540 3.460 5 O -0.559 6.559 6 C -0.189 4.189 7 C -0.154 4.154 8 C -0.152 4.152 9 C 0.122 3.878 10 H 0.097 0.903 11 C -0.156 4.156 12 C 0.174 3.826 13 N -0.601 5.601 14 C -0.221 4.221 15 H 0.077 0.923 16 C -0.006 4.006 17 N -0.922 5.922 18 Si 0.907 3.093 19 H -0.281 1.281 20 H -0.291 1.291 21 H -0.292 1.292 22 C 0.123 3.877 23 H 0.090 0.910 24 H 0.031 0.969 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.116 0.884 28 H 0.124 0.876 29 H 0.097 0.903 30 H 0.101 0.899 31 H 0.099 0.901 32 H 0.105 0.895 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.043 0.957 36 H 0.053 0.947 37 H 0.251 0.749 38 H 0.047 0.953 39 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.244 3.050 -11.093 11.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.027 4.027 3 N -0.311 5.311 4 C 0.328 3.672 5 O -0.439 6.439 6 C -0.210 4.210 7 C -0.192 4.192 8 C -0.189 4.189 9 C 0.018 3.982 10 H 0.115 0.885 11 C -0.196 4.196 12 C 0.050 3.950 13 N -0.328 5.328 14 C -0.349 4.349 15 H 0.095 0.905 16 C -0.202 4.202 17 N -0.570 5.570 18 Si 0.738 3.262 19 H -0.206 1.206 20 H -0.218 1.218 21 H -0.219 1.219 22 C -0.003 4.003 23 H 0.108 0.892 24 H 0.050 0.950 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.134 0.866 28 H 0.142 0.858 29 H 0.116 0.884 30 H 0.120 0.880 31 H 0.117 0.883 32 H 0.124 0.876 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.061 0.939 36 H 0.071 0.929 37 H 0.062 0.938 38 H 0.065 0.935 39 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 2.397 3.427 -10.951 11.722 hybrid contribution -0.877 -0.773 0.512 1.276 sum 1.520 2.654 -10.439 10.877 Atomic orbital electron populations 1.22261 0.95668 1.02119 1.02225 1.21955 0.95266 0.81463 1.03998 1.47773 1.63738 1.14710 1.04836 1.19630 0.77044 0.85888 0.84591 1.90622 1.47709 1.18097 1.87487 1.22260 1.02566 1.05074 0.91077 1.22897 0.94273 1.00105 1.01887 1.22924 1.02414 0.98017 0.95551 1.22298 0.96995 0.96238 0.82655 0.88458 1.23307 0.97808 0.99877 0.98567 1.21257 0.82550 0.92801 0.98436 1.44507 1.03693 1.15364 1.69187 1.18997 0.86502 0.98093 1.31279 0.90525 1.24734 0.96600 0.97625 1.01245 1.69958 1.19265 1.17955 1.49773 0.86114 0.81739 0.79833 0.78512 1.20590 1.21831 1.21863 1.21957 0.95322 0.89555 0.93515 0.89173 0.94993 0.92360 0.92331 0.86585 0.85844 0.88438 0.88040 0.88282 0.87633 0.91390 0.91908 0.93903 0.92921 0.93813 0.93499 0.95382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.88 9.64 37.15 0.36 -2.52 16 2 C 0.10 1.65 4.94 -4.05 -0.02 1.63 16 3 N -0.58 -10.25 2.54 -163.53 -0.41 -10.67 16 4 C 0.54 9.35 7.46 -10.98 -0.08 9.27 16 5 O -0.56 -11.19 15.64 5.56 0.09 -11.11 16 6 C -0.19 -2.55 4.79 -91.77 -0.44 -2.99 16 7 C -0.15 -1.73 10.24 -26.69 -0.27 -2.00 16 8 C -0.15 -1.75 10.05 -26.69 -0.27 -2.02 16 9 C 0.12 2.28 3.67 -65.65 -0.24 2.04 16 10 H 0.10 1.82 7.02 -51.93 -0.36 1.46 16 11 C -0.16 -2.92 6.45 -24.76 -0.16 -3.08 16 12 C 0.17 3.94 4.27 -3.06 -0.01 3.92 16 13 N -0.60 -14.01 2.07 -170.07 -0.35 -14.37 16 14 C -0.22 -5.66 8.91 -15.06 -0.13 -5.79 16 15 H 0.08 1.95 7.83 -52.49 -0.41 1.53 16 16 C -0.01 -0.15 5.49 -17.43 -0.10 -0.25 16 17 N -0.92 -25.43 10.31 55.49 0.57 -24.85 16 18 Si 0.91 21.20 29.55 -169.99 -5.02 16.18 16 19 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 22 C 0.12 2.50 5.95 -2.53 -0.02 2.49 16 23 H 0.09 1.82 3.69 -51.93 -0.19 1.63 16 24 H 0.03 0.49 7.53 -51.93 -0.39 0.10 16 25 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 26 H 0.06 0.88 6.60 -51.93 -0.34 0.54 16 27 H 0.12 2.37 3.90 -51.93 -0.20 2.17 16 28 H 0.12 1.54 6.56 -51.93 -0.34 1.20 16 29 H 0.10 1.16 8.14 -51.93 -0.42 0.73 16 30 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.11 1.35 7.67 -51.93 -0.40 0.96 16 33 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 35 H 0.04 1.10 7.51 -51.92 -0.39 0.71 16 36 H 0.05 1.29 5.30 -51.93 -0.28 1.02 16 37 H 0.25 6.83 8.31 -40.82 -0.34 6.49 16 38 H 0.05 0.96 6.51 -51.93 -0.34 0.62 16 39 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 298.66 15.07 4.50 4.50 Total: -1.00 -28.58 298.66 -7.75 -36.33 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -5.74 Total: 3.29 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: -1.38 Total: 0.70 kcal Atomic # 7 Polarization: -49.70 SS G_CDS: -0.20 Total: -49.89 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: 0.09 Total: -11.11 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -28.58 -7.75 -36.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033731072.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.540 kcal (2) G-P(sol) polarization free energy of solvation -28.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds