Wall clock time and date at job start Sun Mar 29 2020 22:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46499 * 109.47008 * 2 1 4 4 C 1.34785 * 119.99606 * 269.23015 * 3 2 1 5 5 O 1.21277 * 119.99813 * 179.97438 * 4 3 2 6 6 C 1.50696 * 120.00069 * 0.02562 * 4 3 2 7 7 C 1.53001 * 117.49876 * 248.74816 * 6 4 3 8 8 C 1.53002 * 117.49940 * 180.08703 * 6 4 3 9 9 C 1.46493 * 120.00486 * 89.23126 * 3 2 1 10 10 H 1.09006 * 110.88897 * 182.84343 * 9 3 2 11 11 C 1.55402 * 110.92378 * 58.97913 * 9 3 2 12 12 C 1.54328 * 102.82479 * 277.25285 * 11 9 3 13 13 N 1.47019 * 107.40431 * 337.97318 * 12 11 9 14 14 C 1.36939 * 125.64997 * 178.89561 * 13 12 11 15 15 H 1.07998 * 119.99561 * 179.97438 * 14 13 12 16 16 C 1.38811 * 120.00090 * 359.97438 * 14 13 12 17 17 N 1.31618 * 119.99891 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00104 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47194 * 0.02562 * 18 16 14 20 20 H 1.48496 * 109.47070 * 120.00184 * 18 16 14 21 21 H 1.48502 * 109.47021 * 240.00417 * 18 16 14 22 22 C 1.47421 * 108.70130 * 358.86757 * 13 12 11 23 23 H 1.08995 * 109.47478 * 300.00296 * 1 2 3 24 24 H 1.09000 * 109.47436 * 60.00620 * 1 2 3 25 25 H 1.09005 * 109.46917 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47478 * 239.99704 * 2 1 3 27 27 H 1.08999 * 109.46912 * 119.99343 * 2 1 3 28 28 H 1.09004 * 115.55027 * 34.41473 * 6 4 3 29 29 H 1.08996 * 117.49898 * 359.97438 * 7 6 4 30 30 H 1.08999 * 117.50106 * 145.02325 * 7 6 4 31 31 H 1.09001 * 117.49701 * 214.98246 * 8 6 4 32 32 H 1.08999 * 117.49695 * 359.97215 * 8 6 4 33 33 H 1.08994 * 110.69858 * 158.96799 * 11 9 3 34 34 H 1.08999 * 110.85581 * 35.61190 * 11 9 3 35 35 H 1.09007 * 109.88392 * 218.48182 * 12 11 9 36 36 H 1.08999 * 109.88226 * 97.47573 * 12 11 9 37 37 H 0.96999 * 120.00120 * 179.97438 * 17 16 14 38 38 H 1.09001 * 110.36810 * 142.96294 * 22 13 12 39 39 H 1.09005 * 110.36733 * 265.28582 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.2576 2.0113 -1.1672 5 8 2.6614 3.1549 -1.1673 6 6 2.0224 1.2952 -2.4721 7 6 3.2497 0.9380 -3.3131 8 6 2.3147 2.0637 -3.7624 9 6 2.2464 2.0776 1.2685 10 1 2.5593 3.1074 1.0958 11 6 3.2848 1.3177 2.1398 12 6 2.4281 0.2328 2.8258 13 7 1.0329 0.6960 2.8050 14 6 -0.0438 0.0082 3.2981 15 1 -1.0331 0.4368 3.2350 16 6 0.1364 -1.2396 3.8788 17 7 1.3422 -1.7616 3.9560 18 14 -1.3322 -2.1774 4.5519 19 1 -2.5668 -1.3787 4.3447 20 1 -1.4581 -3.4757 3.8421 21 1 -1.1391 -2.4236 6.0036 22 6 0.9850 2.0237 2.1662 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8899 27 1 1.8932 -0.5137 0.8900 28 1 1.1857 0.5967 -2.4809 29 1 4.2271 1.2213 -2.9227 30 1 3.2201 0.0048 -3.8755 31 1 1.6705 1.8706 -4.6202 32 1 2.6767 3.0874 -3.6674 33 1 3.7281 1.9840 2.8797 34 1 4.0558 0.8637 1.5172 35 1 2.7579 0.0962 3.8557 36 1 2.5148 -0.7074 2.2812 37 1 1.4682 -2.6334 4.3621 38 1 0.0840 2.1210 1.5605 39 1 1.0226 2.8094 2.9208 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033731072.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:48 Heat of formation + Delta-G solvation = 14.815879 kcal Electronic energy + Delta-G solvation = -19972.504042 eV Core-core repulsion = 17109.699108 eV Total energy + Delta-G solvation = -2862.804934 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.46657 -39.38784 -36.96011 -36.05565 -34.15596 -31.86891 -30.53272 -29.20056 -26.57196 -25.48290 -23.79176 -23.28772 -21.92137 -21.55167 -19.69158 -18.87419 -18.65281 -17.35245 -16.63913 -16.35555 -15.76882 -15.72929 -15.26020 -14.96874 -14.22166 -14.17120 -13.80925 -13.68659 -13.45860 -13.31359 -12.87099 -12.83142 -12.55761 -12.40983 -12.27926 -12.00293 -11.95474 -11.84741 -11.54788 -11.48286 -11.45188 -11.31576 -10.73350 -10.52593 -9.62729 -8.78169 -7.78247 -5.11393 1.48629 1.50135 1.51280 1.59035 2.03571 2.53371 2.96178 3.41835 3.52164 3.70367 3.86896 3.90255 4.03795 4.04967 4.20268 4.27298 4.34080 4.57532 4.61394 4.69296 4.75017 4.75796 4.85468 4.92331 4.97313 5.05024 5.06118 5.07446 5.21697 5.26132 5.53210 5.63657 5.67022 5.75081 5.86558 6.24272 6.55513 7.16844 7.20209 7.82020 8.47509 9.32214 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.032409 B = 0.006591 C = 0.006111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.741677 B = 4247.342455 C = 4581.146722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.103 3.897 3 N -0.583 5.583 4 C 0.536 3.464 5 O -0.591 6.591 6 C -0.207 4.207 7 C -0.139 4.139 8 C -0.144 4.144 9 C 0.130 3.870 10 H 0.101 0.899 11 C -0.142 4.142 12 C 0.187 3.813 13 N -0.609 5.609 14 C -0.218 4.218 15 H 0.077 0.923 16 C -0.055 4.055 17 N -0.947 5.947 18 Si 0.964 3.036 19 H -0.270 1.270 20 H -0.293 1.293 21 H -0.300 1.300 22 C 0.124 3.876 23 H 0.060 0.940 24 H 0.053 0.947 25 H 0.056 0.944 26 H 0.087 0.913 27 H 0.085 0.915 28 H 0.138 0.862 29 H 0.088 0.912 30 H 0.131 0.869 31 H 0.128 0.872 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.005 0.995 36 H 0.034 0.966 37 H 0.245 0.755 38 H 0.047 0.953 39 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.876 3.079 -13.088 13.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.019 4.019 3 N -0.312 5.312 4 C 0.327 3.673 5 O -0.473 6.473 6 C -0.228 4.228 7 C -0.177 4.177 8 C -0.181 4.181 9 C 0.026 3.974 10 H 0.119 0.881 11 C -0.181 4.181 12 C 0.062 3.938 13 N -0.335 5.335 14 C -0.347 4.347 15 H 0.095 0.905 16 C -0.249 4.249 17 N -0.597 5.597 18 Si 0.795 3.205 19 H -0.195 1.195 20 H -0.220 1.220 21 H -0.227 1.227 22 C -0.002 4.002 23 H 0.079 0.921 24 H 0.072 0.928 25 H 0.075 0.925 26 H 0.106 0.894 27 H 0.103 0.897 28 H 0.156 0.844 29 H 0.106 0.894 30 H 0.149 0.851 31 H 0.146 0.854 32 H 0.106 0.894 33 H 0.099 0.901 34 H 0.092 0.908 35 H 0.023 0.977 36 H 0.052 0.948 37 H 0.054 0.946 38 H 0.065 0.935 39 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 2.017 3.475 -12.963 13.571 hybrid contribution -0.761 -0.713 1.107 1.521 sum 1.256 2.762 -11.856 12.238 Atomic orbital electron populations 1.22148 0.95709 1.01892 1.01794 1.21829 0.95099 0.81178 1.03828 1.47816 1.63888 1.14771 1.04757 1.20297 0.75896 0.85621 0.85492 1.90605 1.49099 1.19580 1.87998 1.22276 1.04581 1.06301 0.89596 1.23036 0.92888 1.01238 1.00491 1.23019 1.02636 0.97249 0.95178 1.22132 0.95737 0.96514 0.83064 0.88128 1.23172 0.97429 0.98785 0.98704 1.20995 0.82910 0.93577 0.96315 1.44616 1.03516 1.16313 1.69074 1.19211 0.87173 0.98106 1.30218 0.90524 1.25368 0.98598 0.98628 1.02280 1.70139 1.20783 1.17886 1.50883 0.85209 0.79655 0.78568 0.77110 1.19501 1.22003 1.22734 1.22019 0.96313 0.88108 0.93714 0.92085 0.92806 0.92457 0.89435 0.89707 0.84402 0.89387 0.85074 0.85395 0.89358 0.90071 0.90756 0.97656 0.94823 0.94563 0.93499 0.95025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.29 9.64 71.98 0.69 -4.59 16 2 C 0.10 3.42 4.94 86.38 0.43 3.85 16 3 N -0.58 -19.79 2.54 -789.68 -2.00 -21.79 16 4 C 0.54 17.61 7.46 87.65 0.65 18.26 16 5 O -0.59 -22.97 15.64 -3.02 -0.05 -23.02 16 6 C -0.21 -4.96 4.79 -11.54 -0.06 -5.01 16 7 C -0.14 -2.63 10.24 30.62 0.31 -2.32 16 8 C -0.14 -2.86 10.05 30.62 0.31 -2.55 16 9 C 0.13 4.75 3.67 46.47 0.17 4.92 16 10 H 0.10 3.66 7.02 -2.38 -0.02 3.65 16 11 C -0.14 -5.23 6.45 31.87 0.21 -5.02 16 12 C 0.19 8.62 4.27 86.73 0.37 8.99 16 13 N -0.61 -28.67 2.07 -691.98 -1.43 -30.11 16 14 C -0.22 -11.27 8.91 84.03 0.75 -10.52 16 15 H 0.08 3.89 7.83 -2.91 -0.02 3.86 16 16 C -0.06 -2.96 5.49 84.86 0.47 -2.49 16 17 N -0.95 -53.50 10.31 21.65 0.22 -53.28 16 18 Si 0.96 43.93 29.55 68.60 2.03 45.96 16 19 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 20 H -0.29 -13.32 7.11 99.48 0.71 -12.62 16 21 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 22 C 0.12 5.02 5.95 86.86 0.52 5.53 16 23 H 0.06 2.42 3.69 -2.39 -0.01 2.41 16 24 H 0.05 1.54 7.53 -2.39 -0.02 1.52 16 25 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 26 H 0.09 2.41 6.60 -2.39 -0.02 2.39 16 27 H 0.08 3.46 3.90 -2.39 -0.01 3.45 16 28 H 0.14 2.91 6.56 -2.38 -0.02 2.89 16 29 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.13 1.73 8.14 -2.39 -0.02 1.72 16 31 H 0.13 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.09 2.10 7.67 -2.39 -0.02 2.08 16 33 H 0.08 2.77 8.14 -2.39 -0.02 2.76 16 34 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 35 H 0.01 0.28 7.51 -2.38 -0.02 0.26 16 36 H 0.03 1.70 5.30 -2.39 -0.01 1.69 16 37 H 0.24 13.63 8.31 -92.71 -0.77 12.86 16 38 H 0.05 1.89 6.51 -2.39 -0.02 1.88 16 39 H 0.03 1.27 8.14 -2.38 -0.02 1.25 16 Total: -1.00 -61.98 298.66 4.63 -57.35 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: 1.04 Total: 15.84 kcal Atomic # 6 Polarization: 4.23 SS G_CDS: 4.82 Total: 9.04 kcal Atomic # 7 Polarization: -101.97 SS G_CDS: -3.21 Total: -105.18 kcal Atomic # 8 Polarization: -22.97 SS G_CDS: -0.05 Total: -23.02 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Total: -61.98 4.63 -57.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033731072.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.170 kcal (2) G-P(sol) polarization free energy of solvation -61.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.354 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds