Wall clock time and date at job start Sun Mar 29 2020 22:53:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 109.47170 * 2 1 4 4 C 1.34777 * 119.99874 * 84.88603 * 3 2 1 5 5 O 1.21276 * 120.00210 * 179.71888 * 4 3 2 6 6 C 1.50702 * 119.99855 * 0.02562 * 4 3 2 7 7 C 1.53004 * 117.49427 * 248.74712 * 6 4 3 8 8 C 1.53005 * 117.49685 * 180.08613 * 6 4 3 9 9 C 1.46500 * 120.00243 * 264.88362 * 3 2 1 10 10 H 1.08997 * 110.88646 * 0.25530 * 9 3 2 11 11 C 1.55156 * 111.00556 * 124.13598 * 9 3 2 12 12 C 1.54318 * 102.94380 * 153.57641 * 11 9 3 13 13 N 1.47029 * 107.27145 * 337.80941 * 12 11 9 14 14 C 1.36937 * 125.64729 * 179.00073 * 13 12 11 15 15 H 1.08000 * 119.99719 * 179.97438 * 14 13 12 16 16 C 1.38812 * 120.00306 * 359.96743 * 14 13 12 17 17 N 1.31625 * 119.99529 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 120.00094 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47059 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47252 * 120.00176 * 18 16 14 21 21 H 1.48503 * 109.47100 * 240.00031 * 18 16 14 22 22 C 1.47470 * 108.72259 * 358.97105 * 13 12 11 23 23 H 1.09003 * 109.46628 * 303.45492 * 1 2 3 24 24 H 1.08999 * 109.47288 * 63.44733 * 1 2 3 25 25 H 1.08998 * 109.47197 * 183.45069 * 1 2 3 26 26 H 1.09006 * 109.46763 * 240.00603 * 2 1 3 27 27 H 1.08999 * 109.47013 * 120.00614 * 2 1 3 28 28 H 1.08997 * 115.55268 * 34.41755 * 6 4 3 29 29 H 1.09001 * 117.50073 * 359.97438 * 7 6 4 30 30 H 1.08997 * 117.49811 * 145.02574 * 7 6 4 31 31 H 1.08997 * 117.49780 * 214.97294 * 8 6 4 32 32 H 1.08996 * 117.49658 * 359.97438 * 8 6 4 33 33 H 1.08997 * 110.71803 * 271.94193 * 11 9 3 34 34 H 1.09001 * 110.71553 * 35.21198 * 11 9 3 35 35 H 1.08998 * 109.88113 * 97.22339 * 12 11 9 36 36 H 1.09000 * 109.88062 * 218.23657 * 12 11 9 37 37 H 0.97003 * 119.99529 * 179.97438 * 17 16 14 38 38 H 1.08995 * 110.35061 * 265.25914 * 22 13 12 39 39 H 1.08991 * 110.40382 * 142.91808 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1449 2.0512 1.1626 5 8 2.5540 3.1929 1.1631 6 6 1.7846 1.3793 2.4625 7 6 0.5489 1.8930 3.2044 8 6 1.9482 2.1934 3.7476 9 6 2.3692 2.0342 -1.2636 10 1 2.2069 1.3623 -2.1064 11 6 1.5771 3.3558 -1.4455 12 6 2.4994 4.1886 -2.3604 13 7 3.8604 3.6520 -2.2131 14 6 4.9720 4.1033 -2.8732 15 1 5.9312 3.6404 -2.6945 16 6 4.8659 5.1558 -3.7721 17 7 3.6969 5.7202 -3.9895 18 14 6.3822 5.7710 -4.6730 19 1 7.5637 4.9749 -4.2543 20 1 6.1808 5.6263 -6.1372 21 1 6.6076 7.2013 -4.3434 22 6 3.8306 2.5476 -1.2363 23 1 -0.3633 0.5666 0.8574 24 1 -0.3634 0.4594 -0.9193 25 1 -0.3633 -1.0258 0.0619 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 1.9943 0.3109 2.5135 29 1 -0.0031 2.7171 2.7524 30 1 -0.0541 1.1625 3.7437 31 1 2.2651 1.6605 4.6441 32 1 2.3169 3.2148 3.6528 33 1 0.6196 3.1678 -1.9313 34 1 1.4330 3.8540 -0.4867 35 1 2.1748 4.0963 -3.3968 36 1 2.4762 5.2351 -2.0565 37 1 3.6228 6.4559 -4.6174 38 1 4.0853 2.9140 -0.2419 39 1 4.5165 1.7557 -1.5370 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033731074.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:52 Heat of formation + Delta-G solvation = 25.577395 kcal Electronic energy + Delta-G solvation = -19503.149128 eV Core-core repulsion = 16640.810849 eV Total energy + Delta-G solvation = -2862.338280 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.19485 -37.33283 -35.68061 -35.43860 -32.27184 -30.24992 -28.94656 -27.24808 -24.93040 -23.91560 -22.93114 -22.41057 -20.57357 -19.95613 -18.39865 -17.18382 -16.78876 -15.94453 -14.97089 -14.78429 -14.48184 -14.17009 -13.79060 -13.76543 -13.07246 -12.83126 -12.58566 -12.15719 -11.97091 -11.76415 -11.66144 -11.60727 -11.27071 -10.83580 -10.81173 -10.68828 -10.54868 -10.39162 -10.21528 -9.98418 -9.80991 -9.57556 -9.01957 -8.52002 -8.24849 -6.67130 -5.59954 -2.92324 2.74411 3.16640 3.46570 3.51687 3.54469 3.87538 4.50811 4.61138 4.71637 4.85161 4.89294 5.09135 5.17424 5.31175 5.49010 5.53171 5.56152 5.64396 5.68078 5.73788 5.75457 5.89963 5.90089 5.97415 6.10490 6.14057 6.32875 6.58488 6.67143 6.77042 6.82348 7.29828 7.66070 7.73262 7.79701 7.95029 8.37397 8.54645 9.33635 9.94094 10.61510 11.51956 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.034751 B = 0.005524 C = 0.005230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.538430 B = 5067.844483 C = 5352.379782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.107 3.893 3 N -0.601 5.601 4 C 0.537 3.463 5 O -0.517 6.517 6 C -0.191 4.191 7 C -0.154 4.154 8 C -0.151 4.151 9 C 0.131 3.869 10 H 0.090 0.910 11 C -0.154 4.154 12 C 0.186 3.814 13 N -0.602 5.602 14 C -0.221 4.221 15 H 0.077 0.923 16 C -0.011 4.011 17 N -0.923 5.923 18 Si 0.911 3.089 19 H -0.280 1.280 20 H -0.291 1.291 21 H -0.291 1.291 22 C 0.127 3.873 23 H 0.059 0.941 24 H 0.059 0.941 25 H 0.062 0.938 26 H 0.079 0.921 27 H 0.073 0.927 28 H 0.120 0.880 29 H 0.098 0.902 30 H 0.100 0.900 31 H 0.099 0.901 32 H 0.108 0.892 33 H 0.052 0.948 34 H 0.076 0.924 35 H 0.043 0.957 36 H 0.042 0.958 37 H 0.250 0.750 38 H 0.042 0.958 39 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.322 -13.375 11.924 19.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.016 4.016 3 N -0.334 5.334 4 C 0.325 3.675 5 O -0.392 6.392 6 C -0.212 4.212 7 C -0.192 4.192 8 C -0.188 4.188 9 C 0.028 3.972 10 H 0.108 0.892 11 C -0.193 4.193 12 C 0.060 3.940 13 N -0.329 5.329 14 C -0.350 4.350 15 H 0.095 0.905 16 C -0.207 4.207 17 N -0.571 5.571 18 Si 0.742 3.258 19 H -0.206 1.206 20 H -0.218 1.218 21 H -0.218 1.218 22 C 0.000 4.000 23 H 0.078 0.922 24 H 0.078 0.922 25 H 0.081 0.919 26 H 0.097 0.903 27 H 0.092 0.908 28 H 0.138 0.862 29 H 0.116 0.884 30 H 0.118 0.882 31 H 0.117 0.883 32 H 0.126 0.874 33 H 0.071 0.929 34 H 0.094 0.906 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -8.030 -12.601 11.746 19.006 hybrid contribution 0.679 0.157 -0.618 0.931 sum -7.351 -12.444 11.128 18.240 Atomic orbital electron populations 1.22229 0.96020 1.01809 1.02861 1.21541 0.94404 0.82853 1.02816 1.47902 1.65237 1.13661 1.06566 1.19546 0.77885 0.86085 0.84032 1.90746 1.44330 1.17589 1.86564 1.22294 1.06219 1.00276 0.92425 1.22903 0.90658 1.03234 1.02387 1.22953 0.98934 1.02041 0.94895 1.22411 0.97386 0.94116 0.83321 0.89223 1.23243 0.98105 0.96168 1.01815 1.21035 0.82217 0.95088 0.95616 1.44345 1.05217 1.36046 1.47282 1.19107 0.86819 1.12430 1.16644 0.90520 1.24791 0.97021 0.98762 1.00118 1.69994 1.21733 1.26576 1.38838 0.86040 0.81962 0.78480 0.79291 1.20571 1.21849 1.21821 1.21858 0.92411 0.90945 0.94761 0.92210 0.92174 0.91900 0.90288 0.90841 0.86218 0.88361 0.88169 0.88260 0.87361 0.92885 0.90551 0.93877 0.94022 0.93938 0.93993 0.95082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.56 10.17 37.16 0.38 -1.19 16 2 C 0.11 1.12 5.90 -4.04 -0.02 1.10 16 3 N -0.60 -9.12 2.57 -163.67 -0.42 -9.54 16 4 C 0.54 8.74 6.70 -10.98 -0.07 8.67 16 5 O -0.52 -10.86 12.29 5.56 0.07 -10.80 16 6 C -0.19 -2.22 4.86 -91.77 -0.45 -2.66 16 7 C -0.15 -1.52 10.00 -26.68 -0.27 -1.79 16 8 C -0.15 -1.64 10.05 -26.68 -0.27 -1.91 16 9 C 0.13 2.48 3.55 -65.78 -0.23 2.25 16 10 H 0.09 1.58 7.82 -51.93 -0.41 1.17 16 11 C -0.15 -3.26 6.30 -24.90 -0.16 -3.41 16 12 C 0.19 4.91 5.37 -3.06 -0.02 4.89 16 13 N -0.60 -16.67 3.40 -170.04 -0.58 -17.25 16 14 C -0.22 -6.57 10.28 -15.06 -0.15 -6.72 16 15 H 0.08 2.20 7.83 -52.49 -0.41 1.79 16 16 C -0.01 -0.33 5.49 -17.43 -0.10 -0.43 16 17 N -0.92 -28.49 10.31 55.49 0.57 -27.92 16 18 Si 0.91 23.07 29.55 -169.99 -5.02 18.04 16 19 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 21 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 22 C 0.13 2.94 6.61 -2.50 -0.02 2.93 16 23 H 0.06 0.57 7.49 -51.93 -0.39 0.18 16 24 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.08 0.77 7.86 -51.93 -0.41 0.36 16 27 H 0.07 0.62 6.23 -51.93 -0.32 0.30 16 28 H 0.12 1.10 6.52 -51.93 -0.34 0.76 16 29 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.11 1.42 7.67 -51.93 -0.40 1.02 16 33 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 34 H 0.08 1.71 5.91 -51.93 -0.31 1.40 16 35 H 0.04 1.22 7.38 -51.93 -0.38 0.84 16 36 H 0.04 1.24 7.50 -51.93 -0.39 0.85 16 37 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 38 H 0.04 1.06 5.88 -51.93 -0.31 0.75 16 39 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 308.09 15.07 4.64 4.64 Total: -1.00 -34.28 308.09 -8.27 -42.54 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: -6.15 Total: -1.45 kcal Atomic # 6 Polarization: 3.10 SS G_CDS: -1.37 Total: 1.73 kcal Atomic # 7 Polarization: -54.29 SS G_CDS: -0.43 Total: -54.71 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: 0.07 Total: -10.80 kcal Atomic # 14 Polarization: 23.07 SS G_CDS: -5.02 Total: 18.04 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -34.28 -8.27 -42.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033731074.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.122 kcal (2) G-P(sol) polarization free energy of solvation -34.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds