Wall clock time and date at job start Sun Mar 29 2020 22:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 109.47170 * 2 1 4 4 C 1.34777 * 119.99874 * 84.88603 * 3 2 1 5 5 O 1.21276 * 120.00210 * 179.71888 * 4 3 2 6 6 C 1.50702 * 119.99855 * 0.02562 * 4 3 2 7 7 C 1.53004 * 117.49427 * 248.74712 * 6 4 3 8 8 C 1.53005 * 117.49685 * 180.08613 * 6 4 3 9 9 C 1.46500 * 120.00243 * 264.88362 * 3 2 1 10 10 H 1.08997 * 110.88646 * 0.25530 * 9 3 2 11 11 C 1.55156 * 111.00556 * 124.13598 * 9 3 2 12 12 C 1.54318 * 102.94380 * 153.57641 * 11 9 3 13 13 N 1.47029 * 107.27145 * 337.80941 * 12 11 9 14 14 C 1.36937 * 125.64729 * 179.00073 * 13 12 11 15 15 H 1.08000 * 119.99719 * 179.97438 * 14 13 12 16 16 C 1.38812 * 120.00306 * 359.96743 * 14 13 12 17 17 N 1.31625 * 119.99529 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 120.00094 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47059 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47252 * 120.00176 * 18 16 14 21 21 H 1.48503 * 109.47100 * 240.00031 * 18 16 14 22 22 C 1.47470 * 108.72259 * 358.97105 * 13 12 11 23 23 H 1.09003 * 109.46628 * 303.45492 * 1 2 3 24 24 H 1.08999 * 109.47288 * 63.44733 * 1 2 3 25 25 H 1.08998 * 109.47197 * 183.45069 * 1 2 3 26 26 H 1.09006 * 109.46763 * 240.00603 * 2 1 3 27 27 H 1.08999 * 109.47013 * 120.00614 * 2 1 3 28 28 H 1.08997 * 115.55268 * 34.41755 * 6 4 3 29 29 H 1.09001 * 117.50073 * 359.97438 * 7 6 4 30 30 H 1.08997 * 117.49811 * 145.02574 * 7 6 4 31 31 H 1.08997 * 117.49780 * 214.97294 * 8 6 4 32 32 H 1.08996 * 117.49658 * 359.97438 * 8 6 4 33 33 H 1.08997 * 110.71803 * 271.94193 * 11 9 3 34 34 H 1.09001 * 110.71553 * 35.21198 * 11 9 3 35 35 H 1.08998 * 109.88113 * 97.22339 * 12 11 9 36 36 H 1.09000 * 109.88062 * 218.23657 * 12 11 9 37 37 H 0.97003 * 119.99529 * 179.97438 * 17 16 14 38 38 H 1.08995 * 110.35061 * 265.25914 * 22 13 12 39 39 H 1.08991 * 110.40382 * 142.91808 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1449 2.0512 1.1626 5 8 2.5540 3.1929 1.1631 6 6 1.7846 1.3793 2.4625 7 6 0.5489 1.8930 3.2044 8 6 1.9482 2.1934 3.7476 9 6 2.3692 2.0342 -1.2636 10 1 2.2069 1.3623 -2.1064 11 6 1.5771 3.3558 -1.4455 12 6 2.4994 4.1886 -2.3604 13 7 3.8604 3.6520 -2.2131 14 6 4.9720 4.1033 -2.8732 15 1 5.9312 3.6404 -2.6945 16 6 4.8659 5.1558 -3.7721 17 7 3.6969 5.7202 -3.9895 18 14 6.3822 5.7710 -4.6730 19 1 7.5637 4.9749 -4.2543 20 1 6.1808 5.6263 -6.1372 21 1 6.6076 7.2013 -4.3434 22 6 3.8306 2.5476 -1.2363 23 1 -0.3633 0.5666 0.8574 24 1 -0.3634 0.4594 -0.9193 25 1 -0.3633 -1.0258 0.0619 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 1.9943 0.3109 2.5135 29 1 -0.0031 2.7171 2.7524 30 1 -0.0541 1.1625 3.7437 31 1 2.2651 1.6605 4.6441 32 1 2.3169 3.2148 3.6528 33 1 0.6196 3.1678 -1.9313 34 1 1.4330 3.8540 -0.4867 35 1 2.1748 4.0963 -3.3968 36 1 2.4762 5.2351 -2.0565 37 1 3.6228 6.4559 -4.6174 38 1 4.0853 2.9140 -0.2419 39 1 4.5165 1.7557 -1.5370 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033731074.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:51 Heat of formation + Delta-G solvation = 3.321802 kcal Electronic energy + Delta-G solvation = -19504.114203 eV Core-core repulsion = 16640.810849 eV Total energy + Delta-G solvation = -2863.303354 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.48242 -38.88209 -36.92036 -36.72745 -34.27895 -31.63171 -30.73585 -28.96811 -26.77818 -25.29861 -23.88937 -23.22760 -22.16238 -21.97249 -19.56594 -18.95612 -18.23193 -17.31783 -16.71411 -16.25986 -15.96104 -15.57606 -15.29224 -14.67828 -14.50954 -14.37501 -14.15163 -13.68190 -13.58090 -13.30307 -12.93140 -12.80721 -12.62210 -12.42350 -12.26072 -12.14789 -12.06265 -11.99663 -11.84341 -11.54981 -11.35182 -11.31550 -10.74856 -10.45067 -9.61892 -8.89480 -7.87178 -5.23825 1.42571 1.45562 1.55830 1.57634 1.97341 2.48702 2.97874 3.30147 3.52053 3.70244 3.87574 3.91281 4.02559 4.03173 4.11670 4.23717 4.28926 4.48270 4.55894 4.67170 4.69885 4.76944 4.86623 4.92833 4.97894 5.00222 5.04053 5.11206 5.18845 5.27448 5.39487 5.45659 5.61287 5.67552 5.78139 6.16002 6.54420 7.06394 7.31773 7.73247 8.39598 9.23890 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.034751 B = 0.005524 C = 0.005230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.538430 B = 5067.844483 C = 5352.379782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.099 3.901 3 N -0.597 5.597 4 C 0.526 3.474 5 O -0.578 6.578 6 C -0.193 4.193 7 C -0.135 4.135 8 C -0.159 4.159 9 C 0.151 3.849 10 H 0.111 0.889 11 C -0.139 4.139 12 C 0.196 3.804 13 N -0.623 5.623 14 C -0.244 4.244 15 H 0.081 0.919 16 C -0.069 4.069 17 N -0.954 5.954 18 Si 0.985 3.015 19 H -0.265 1.265 20 H -0.285 1.285 21 H -0.293 1.293 22 C 0.125 3.875 23 H 0.056 0.944 24 H 0.044 0.956 25 H 0.092 0.908 26 H 0.090 0.910 27 H 0.103 0.897 28 H 0.156 0.844 29 H 0.078 0.922 30 H 0.139 0.861 31 H 0.130 0.870 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.061 0.939 35 H 0.019 0.981 36 H -0.007 1.007 37 H 0.247 0.753 38 H 0.020 0.980 39 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.827 -16.485 12.934 22.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.022 4.022 3 N -0.329 5.329 4 C 0.317 3.683 5 O -0.457 6.457 6 C -0.213 4.213 7 C -0.172 4.172 8 C -0.196 4.196 9 C 0.046 3.954 10 H 0.129 0.871 11 C -0.178 4.178 12 C 0.071 3.929 13 N -0.350 5.350 14 C -0.373 4.373 15 H 0.099 0.901 16 C -0.261 4.261 17 N -0.604 5.604 18 Si 0.812 3.188 19 H -0.189 1.189 20 H -0.212 1.212 21 H -0.220 1.220 22 C -0.001 4.001 23 H 0.076 0.924 24 H 0.063 0.937 25 H 0.111 0.889 26 H 0.109 0.891 27 H 0.121 0.879 28 H 0.173 0.827 29 H 0.097 0.903 30 H 0.157 0.843 31 H 0.149 0.851 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.079 0.921 35 H 0.037 0.963 36 H 0.012 0.988 37 H 0.057 0.943 38 H 0.038 0.962 39 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -8.554 -15.784 12.780 22.037 hybrid contribution 0.836 1.134 -0.882 1.662 sum -7.718 -14.650 11.898 20.391 Atomic orbital electron populations 1.22187 0.94728 1.03503 1.01964 1.21942 0.95405 0.79932 1.04899 1.47983 1.64699 1.15408 1.04780 1.20469 0.76589 0.85545 0.85743 1.90729 1.47010 1.20457 1.87550 1.22318 1.07783 1.01524 0.89696 1.23007 0.90070 1.03085 1.01034 1.23011 1.00130 1.00654 0.95813 1.22035 0.93617 0.93626 0.86138 0.87065 1.23011 0.98297 0.96587 0.99866 1.20745 0.83326 0.93630 0.95235 1.44665 1.05127 1.37418 1.47772 1.19524 0.87814 1.12963 1.17027 0.90099 1.25743 1.00309 0.98938 1.01140 1.70229 1.23969 1.26840 1.39318 0.84916 0.78548 0.77477 0.77811 1.18888 1.21196 1.22032 1.21937 0.95816 0.89910 0.92441 0.92448 0.93723 0.88920 0.89144 0.87888 0.82653 0.90297 0.84262 0.85142 0.90795 0.90198 0.92076 0.96317 0.98842 0.94325 0.96174 0.94110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.37 10.17 71.98 0.73 -1.64 16 2 C 0.10 1.68 5.90 86.38 0.51 2.19 16 3 N -0.60 -17.05 2.57 -790.12 -2.03 -19.08 16 4 C 0.53 16.75 6.70 87.66 0.59 17.34 16 5 O -0.58 -25.26 12.29 -3.02 -0.04 -25.30 16 6 C -0.19 -3.93 4.86 -11.54 -0.06 -3.99 16 7 C -0.13 -2.26 10.00 30.62 0.31 -1.95 16 8 C -0.16 -3.17 10.05 30.62 0.31 -2.87 16 9 C 0.15 5.60 3.55 46.39 0.16 5.77 16 10 H 0.11 3.69 7.82 -2.39 -0.02 3.67 16 11 C -0.14 -5.98 6.30 31.78 0.20 -5.78 16 12 C 0.20 10.92 5.37 86.73 0.47 11.39 16 13 N -0.62 -35.77 3.40 -691.88 -2.35 -38.12 16 14 C -0.24 -14.89 10.28 84.03 0.86 -14.03 16 15 H 0.08 4.71 7.83 -2.91 -0.02 4.69 16 16 C -0.07 -4.18 5.49 84.86 0.47 -3.71 16 17 N -0.95 -61.27 10.31 21.65 0.22 -61.05 16 18 Si 0.98 48.32 29.55 68.60 2.03 50.35 16 19 H -0.26 -12.17 7.11 99.48 0.71 -11.46 16 20 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 21 H -0.29 -14.41 7.11 99.48 0.71 -13.70 16 22 C 0.13 5.89 6.61 86.85 0.57 6.47 16 23 H 0.06 0.86 7.49 -2.39 -0.02 0.85 16 24 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 25 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.09 1.38 7.86 -2.38 -0.02 1.36 16 27 H 0.10 1.19 6.23 -2.39 -0.01 1.17 16 28 H 0.16 2.05 6.52 -2.39 -0.02 2.03 16 29 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.14 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.13 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.07 2.01 7.67 -2.39 -0.02 1.99 16 33 H 0.08 2.98 8.14 -2.39 -0.02 2.96 16 34 H 0.06 2.85 5.91 -2.39 -0.01 2.84 16 35 H 0.02 1.11 7.38 -2.39 -0.02 1.09 16 36 H -0.01 -0.43 7.50 -2.39 -0.02 -0.45 16 37 H 0.25 15.26 8.31 -92.71 -0.77 14.49 16 38 H 0.02 1.06 5.88 -2.39 -0.01 1.05 16 39 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -80.34 308.09 3.98 -76.37 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: 1.02 Total: 7.65 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: 5.12 Total: 9.19 kcal Atomic # 7 Polarization: -114.10 SS G_CDS: -4.16 Total: -118.26 kcal Atomic # 8 Polarization: -25.26 SS G_CDS: -0.04 Total: -25.30 kcal Atomic # 14 Polarization: 48.32 SS G_CDS: 2.03 Total: 50.35 kcal Total: -80.34 3.98 -76.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033731074.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.690 kcal (2) G-P(sol) polarization free energy of solvation -80.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds