Wall clock time and date at job start Sun Mar 29 2020 22:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 O 1.21286 * 119.99766 * 2 1 4 4 N 1.34770 * 120.00226 * 180.02562 * 2 1 3 5 5 C 1.46941 * 120.55367 * 180.02562 * 4 2 1 6 6 C 1.53333 * 108.68764 * 125.62698 * 5 4 2 7 7 C 1.52103 * 109.44416 * 53.30334 * 6 5 4 8 8 C 1.54391 * 110.51280 * 64.09319 * 7 6 5 9 9 C 1.54448 * 102.87090 * 83.32985 * 8 7 6 10 10 N 1.47085 * 107.29889 * 21.50939 * 9 8 7 11 11 C 1.36932 * 125.62582 * 180.96949 * 10 9 8 12 12 H 1.08008 * 119.99900 * 189.80083 * 11 10 9 13 13 C 1.38813 * 120.00606 * 9.79748 * 11 10 9 14 14 N 1.31612 * 120.00346 * 208.95226 * 13 11 10 15 15 Si 1.86795 * 119.99699 * 28.95134 * 13 11 10 16 16 H 1.48502 * 109.47477 * 275.30216 * 15 13 11 17 17 H 1.48501 * 109.47387 * 35.30155 * 15 13 11 18 18 H 1.48497 * 109.47357 * 155.30134 * 15 13 11 19 19 C 1.47569 * 108.74352 * 1.22821 * 10 9 8 20 20 C 1.52107 * 111.60214 * 300.69308 * 7 6 5 21 21 C 1.46925 * 120.55333 * 359.97438 * 4 2 1 22 22 H 1.09008 * 109.47211 * 269.99760 * 1 2 3 23 23 H 1.09002 * 109.47663 * 29.99853 * 1 2 3 24 24 H 1.09005 * 109.47351 * 149.99859 * 1 2 3 25 25 H 1.09002 * 109.60248 * 5.86007 * 5 4 2 26 26 H 1.09003 * 109.59887 * 245.38801 * 5 4 2 27 27 H 1.09001 * 109.47421 * 293.31323 * 6 5 4 28 28 H 1.08997 * 109.48269 * 173.30186 * 6 5 4 29 29 H 1.08999 * 110.72355 * 324.98567 * 8 7 6 30 30 H 1.08999 * 110.73294 * 201.67838 * 8 7 6 31 31 H 1.09005 * 109.88025 * 262.08337 * 9 8 7 32 32 H 1.09002 * 109.88083 * 140.93421 * 9 8 7 33 33 H 0.97003 * 120.00354 * 4.82071 * 14 13 11 34 34 H 1.08997 * 110.37508 * 95.25854 * 19 10 9 35 35 H 1.08992 * 110.38043 * 217.61228 * 19 10 9 36 36 H 1.09001 * 109.47853 * 179.29676 * 20 7 6 37 37 H 1.09003 * 109.47445 * 299.31479 * 20 7 6 38 38 H 1.09004 * 109.60149 * 354.12693 * 21 4 2 39 39 H 1.09000 * 109.60348 * 114.60753 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1808 -1.1671 -0.0005 5 6 3.6501 -1.1813 0.0000 6 6 4.1328 -2.0328 1.1803 7 6 3.4700 -3.4006 1.1223 8 6 3.9101 -4.1617 -0.1468 9 6 5.2584 -4.7850 0.2760 10 7 5.2724 -4.8416 1.7457 11 6 6.3020 -5.3121 2.5161 12 1 6.1591 -5.4605 3.5763 13 6 7.5294 -5.5986 1.9345 14 7 8.3024 -6.5290 2.4532 15 14 8.0841 -4.6636 0.4155 16 1 7.5134 -5.3047 -0.7964 17 1 7.6131 -3.2578 0.5000 18 1 9.5667 -4.6848 0.3350 19 6 3.9912 -4.3133 2.2527 20 6 1.9539 -3.2910 1.1792 21 6 1.4586 -2.4466 -0.0005 22 1 -0.3634 0.0000 1.0277 23 1 -0.3634 0.8900 -0.5138 24 1 -0.3634 -0.8900 -0.5139 25 1 4.0256 -0.1634 0.1057 26 1 4.0120 -1.6118 -0.9337 27 1 3.8684 -1.5402 2.1160 28 1 5.2150 -2.1507 1.1249 29 1 4.0476 -3.4737 -0.9810 30 1 3.1886 -4.9383 -0.4007 31 1 6.0812 -4.1642 -0.0788 32 1 5.3467 -5.7909 -0.1344 33 1 7.9856 -7.0626 3.1988 34 1 3.2917 -5.1282 2.4388 35 1 4.1524 -3.7352 3.1625 36 1 1.5151 -4.2873 1.1228 37 1 1.6587 -2.8162 2.1149 38 1 0.3893 -2.2629 0.1050 39 1 1.6508 -2.9750 -0.9343 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035142710.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:55:53 Heat of formation + Delta-G solvation = -8.034950 kcal Electronic energy + Delta-G solvation = -19761.362691 eV Core-core repulsion = 16897.566871 eV Total energy + Delta-G solvation = -2863.795820 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.51291 -38.74017 -35.98647 -33.22190 -31.73419 -31.29494 -29.46742 -28.97889 -26.94909 -23.79043 -23.21956 -22.82105 -20.46529 -19.85282 -18.18319 -17.31056 -16.88475 -15.92387 -15.55649 -15.36193 -14.95745 -14.22189 -13.70402 -13.66751 -13.57764 -13.20036 -13.13149 -12.61441 -12.57967 -12.23116 -12.19843 -11.74403 -11.36420 -11.11814 -11.09489 -10.94633 -10.60729 -10.33886 -10.25623 -9.95828 -9.77952 -9.55990 -9.13787 -8.63068 -8.42378 -7.04564 -6.35193 -3.15167 2.55442 2.96947 3.44556 3.53681 3.71708 4.46382 4.64430 4.65715 4.75764 4.90073 4.99389 5.03544 5.13836 5.16483 5.23934 5.31062 5.43035 5.49016 5.60665 5.70023 5.70665 5.79018 5.82833 5.94292 5.99028 6.07331 6.25920 6.33506 6.36172 6.52597 6.57217 6.65402 6.76247 6.83828 7.36462 7.73174 8.10461 8.35974 9.04114 9.60962 10.28586 11.14244 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.039132 B = 0.006102 C = 0.005729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.350006 B = 4587.535993 C = 4886.644350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.510 3.490 3 O -0.554 6.554 4 N -0.608 5.608 5 C 0.109 3.891 6 C -0.113 4.113 7 C -0.074 4.074 8 C -0.122 4.122 9 C 0.121 3.879 10 N -0.608 5.608 11 C -0.331 4.331 12 H 0.076 0.924 13 C -0.013 4.013 14 N -0.914 5.914 15 Si 1.054 2.946 16 H -0.295 1.295 17 H -0.293 1.293 18 H -0.300 1.300 19 C 0.146 3.854 20 C -0.117 4.117 21 C 0.105 3.895 22 H 0.092 0.908 23 H 0.090 0.910 24 H 0.082 0.918 25 H 0.090 0.910 26 H 0.069 0.931 27 H 0.063 0.937 28 H 0.085 0.915 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.025 0.975 32 H 0.037 0.963 33 H 0.264 0.736 34 H 0.025 0.975 35 H 0.042 0.958 36 H 0.077 0.923 37 H 0.066 0.934 38 H 0.086 0.914 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.240 8.287 -6.321 20.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.299 3.701 3 O -0.433 6.433 4 N -0.342 5.342 5 C -0.013 4.013 6 C -0.151 4.151 7 C -0.076 4.076 8 C -0.160 4.160 9 C -0.004 4.004 10 N -0.335 5.335 11 C -0.458 4.458 12 H 0.094 0.906 13 C -0.214 4.214 14 N -0.554 5.554 15 Si 0.887 3.113 16 H -0.223 1.223 17 H -0.221 1.221 18 H -0.228 1.228 19 C 0.020 3.980 20 C -0.156 4.156 21 C -0.018 4.018 22 H 0.111 0.889 23 H 0.109 0.891 24 H 0.101 0.899 25 H 0.108 0.892 26 H 0.087 0.913 27 H 0.082 0.918 28 H 0.103 0.897 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.042 0.958 32 H 0.054 0.946 33 H 0.074 0.926 34 H 0.043 0.957 35 H 0.060 0.940 36 H 0.096 0.904 37 H 0.085 0.915 38 H 0.104 0.896 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -15.569 8.986 -7.291 19.398 hybrid contribution -1.242 -0.327 1.093 1.686 sum -16.810 8.659 -6.198 19.899 Atomic orbital electron populations 1.21962 0.92184 1.04633 1.04688 1.20778 0.90543 0.83173 0.75649 1.90702 1.70752 1.31159 1.50665 1.48208 1.07322 1.05935 1.72720 1.21738 0.78748 1.01790 0.98992 1.21653 1.01726 0.94040 0.97726 1.21149 0.93614 0.95305 0.97482 1.22645 0.97816 0.98821 0.96716 1.21618 0.94578 0.98082 0.86155 1.44822 1.14525 1.74076 1.00059 1.20005 0.91201 1.41481 0.93091 0.90593 1.25722 0.93045 0.98897 1.03738 1.70889 1.41230 1.17766 1.25505 0.83967 0.74850 0.76394 0.76078 1.22266 1.22090 1.22809 1.21586 0.88488 0.93459 0.94436 1.21729 0.95689 1.00068 0.98075 1.21883 0.96360 0.84001 0.99522 0.88937 0.89149 0.89921 0.89175 0.91297 0.91807 0.89668 0.91519 0.91410 0.95793 0.94555 0.92632 0.95728 0.93983 0.90396 0.91531 0.89601 0.91028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.36 9.46 36.00 0.34 -1.02 16 2 C 0.51 6.44 7.81 -10.99 -0.09 6.36 16 3 O -0.55 -9.41 16.50 5.55 0.09 -9.32 16 4 N -0.61 -7.32 2.96 -172.60 -0.51 -7.83 16 5 C 0.11 1.52 6.12 -3.63 -0.02 1.49 16 6 C -0.11 -1.77 4.87 -27.02 -0.13 -1.90 16 7 C -0.07 -1.12 0.55 -153.98 -0.08 -1.21 16 8 C -0.12 -1.92 4.92 -25.24 -0.12 -2.04 16 9 C 0.12 2.58 4.61 -2.96 -0.01 2.57 16 10 N -0.61 -14.64 3.28 -170.18 -0.56 -15.20 16 11 C -0.33 -9.45 10.41 -15.06 -0.16 -9.61 16 12 H 0.08 2.29 8.06 -52.48 -0.42 1.87 16 13 C -0.01 -0.38 5.41 -17.43 -0.09 -0.48 16 14 N -0.91 -28.67 13.70 55.49 0.76 -27.91 16 15 Si 1.05 26.84 24.74 -169.99 -4.20 22.63 16 16 H -0.29 -7.08 6.74 56.52 0.38 -6.70 16 17 H -0.29 -7.11 6.86 56.52 0.39 -6.72 16 18 H -0.30 -7.78 7.11 56.52 0.40 -7.38 16 19 C 0.15 2.83 6.16 -2.75 -0.02 2.81 16 20 C -0.12 -1.31 4.84 -27.03 -0.13 -1.44 16 21 C 0.11 0.98 5.95 -3.65 -0.02 0.96 16 22 H 0.09 0.61 8.14 -51.92 -0.42 0.19 16 23 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.08 0.46 6.17 -51.93 -0.32 0.14 16 25 H 0.09 1.36 6.99 -51.93 -0.36 0.99 16 26 H 0.07 0.91 6.55 -51.93 -0.34 0.57 16 27 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 28 H 0.08 1.57 7.82 -51.93 -0.41 1.16 16 29 H 0.07 0.94 6.17 -51.93 -0.32 0.62 16 30 H 0.07 0.95 7.98 -51.93 -0.41 0.54 16 31 H 0.02 0.55 3.71 -51.93 -0.19 0.36 16 32 H 0.04 0.83 8.00 -51.93 -0.42 0.41 16 33 H 0.26 8.17 8.73 -40.82 -0.36 7.81 16 34 H 0.02 0.47 8.00 -51.93 -0.42 0.06 16 35 H 0.04 0.84 8.03 -51.93 -0.42 0.42 16 36 H 0.08 0.79 8.09 -51.93 -0.42 0.37 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.09 0.56 5.49 -51.93 -0.29 0.27 16 39 H 0.07 0.63 7.62 -51.93 -0.40 0.24 16 LS Contribution 292.98 15.07 4.42 4.42 Total: -1.00 -33.80 292.98 -6.55 -40.36 By element: Atomic # 1 Polarization: 2.36 SS G_CDS: -6.01 Total: -3.65 kcal Atomic # 6 Polarization: -2.96 SS G_CDS: -0.54 Total: -3.50 kcal Atomic # 7 Polarization: -50.63 SS G_CDS: -0.31 Total: -50.94 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: 0.09 Total: -9.32 kcal Atomic # 14 Polarization: 26.84 SS G_CDS: -4.20 Total: 22.63 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -33.80 -6.55 -40.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035142710.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.323 kcal (2) G-P(sol) polarization free energy of solvation -33.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds