Wall clock time and date at job start Sun Mar 29 2020 22:55:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21281 * 119.99880 * 2 1 4 4 N 1.34770 * 119.99975 * 179.72029 * 2 1 3 5 5 C 1.47491 * 125.66530 * 359.96892 * 4 2 1 6 6 C 1.55273 * 104.78116 * 155.88286 * 5 4 2 7 7 C 1.54481 * 101.42298 * 36.67531 * 6 5 4 8 8 C 1.47188 * 125.66218 * 180.27599 * 4 2 1 9 9 C 1.52243 * 110.29395 * 206.46550 * 7 6 5 10 10 C 1.53160 * 109.64837 * 178.00030 * 9 7 6 11 11 C 1.53196 * 109.27333 * 60.18449 * 10 9 7 12 12 N 1.46936 * 108.92122 * 304.77024 * 11 10 9 13 13 C 1.36932 * 120.70051 * 234.13182 * 12 11 10 14 14 H 1.08001 * 119.99871 * 27.25956 * 13 12 11 15 15 C 1.38813 * 120.00073 * 207.25440 * 13 12 11 16 16 N 1.31622 * 119.99863 * 17.20863 * 15 13 12 17 17 Si 1.86799 * 119.99853 * 197.20730 * 15 13 12 18 18 H 1.48505 * 109.47235 * 90.00380 * 17 15 13 19 19 H 1.48507 * 109.47179 * 209.99762 * 17 15 13 20 20 H 1.48495 * 109.47433 * 329.99882 * 17 15 13 21 21 C 1.47073 * 118.59904 * 54.16234 * 12 11 10 22 22 H 1.09005 * 109.46937 * 0.02562 * 1 2 3 23 23 H 1.08993 * 109.47120 * 120.00371 * 1 2 3 24 24 H 1.09000 * 109.47003 * 240.00355 * 1 2 3 25 25 H 1.09001 * 110.34860 * 274.84923 * 5 4 2 26 26 H 1.09001 * 110.34960 * 37.12744 * 5 4 2 27 27 H 1.09006 * 111.22958 * 278.57869 * 6 5 4 28 28 H 1.08998 * 110.93660 * 154.64354 * 6 5 4 29 29 H 1.08994 * 109.90949 * 300.89646 * 8 4 2 30 30 H 1.08995 * 109.90913 * 62.16911 * 8 4 2 31 31 H 1.09001 * 109.44061 * 298.05565 * 9 7 6 32 32 H 1.08997 * 109.43838 * 57.98273 * 9 7 6 33 33 H 1.09003 * 109.50260 * 180.11618 * 10 9 7 34 34 H 1.08996 * 109.50766 * 300.24142 * 10 9 7 35 35 H 1.08993 * 109.56631 * 64.60297 * 11 10 9 36 36 H 1.08996 * 109.56218 * 184.94542 * 11 10 9 37 37 H 0.97003 * 119.99463 * 179.97438 * 16 15 13 38 38 H 1.08997 * 109.58266 * 187.74542 * 21 12 11 39 39 H 1.09001 * 109.58059 * 67.34950 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1671 0.0057 5 6 1.5731 -2.5110 0.0129 6 6 2.6581 -3.4397 -0.5963 7 6 3.9505 -2.8180 -0.0221 8 6 3.6456 -1.3123 0.0122 9 6 5.1293 -3.1078 -0.9409 10 6 6.3919 -2.4433 -0.3840 11 6 6.6858 -3.0051 1.0105 12 7 5.4992 -2.8225 1.8576 13 6 5.5929 -2.1794 3.0629 14 1 6.3641 -1.4403 3.2220 15 6 4.6965 -2.4774 4.0801 16 7 3.9873 -3.5849 4.0287 17 14 4.4970 -1.3064 5.5218 18 1 3.4337 -0.3170 5.2125 19 1 4.1200 -2.0751 6.7353 20 1 5.7786 -0.5964 5.7639 21 6 4.2089 -3.3457 1.3840 22 1 -0.3633 1.0277 -0.0005 23 1 -0.3633 -0.5139 -0.8899 24 1 -0.3633 -0.5138 0.8900 25 1 1.3387 -2.8155 1.0329 26 1 0.6742 -2.5238 -0.6035 27 1 2.6520 -3.3925 -1.6853 28 1 2.5311 -4.4658 -0.2510 29 1 4.0705 -0.8275 -0.8666 30 1 4.0583 -0.8706 0.9191 31 1 5.2839 -4.1850 -1.0040 32 1 4.9202 -2.7125 -1.9349 33 1 7.2338 -2.6505 -1.0447 34 1 6.2372 -1.3664 -0.3174 35 1 6.9200 -4.0669 0.9344 36 1 7.5312 -2.4736 1.4474 37 1 3.3612 -3.7933 4.7398 38 1 3.4131 -3.0136 2.0507 39 1 4.2412 -4.4351 1.3650 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040025554.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:55:44 Heat of formation + Delta-G solvation = -20.382811 kcal Electronic energy + Delta-G solvation = -20118.282103 eV Core-core repulsion = 17253.950839 eV Total energy + Delta-G solvation = -2864.331264 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.01953 -38.15978 -35.66351 -33.16686 -31.62363 -30.02986 -29.62457 -28.58019 -25.45203 -25.08118 -23.07246 -22.06627 -20.44216 -19.01097 -18.10392 -16.79810 -16.58027 -15.71238 -15.03093 -14.67616 -14.07225 -13.98992 -13.74104 -13.23633 -13.01875 -12.76905 -12.50554 -12.38919 -12.24701 -12.07793 -11.82382 -11.54456 -11.29382 -10.97361 -10.90146 -10.62012 -10.38125 -10.23771 -10.12948 -9.82957 -9.57679 -9.44726 -9.39019 -8.47369 -8.20573 -6.69067 -5.80500 -3.21154 2.96961 3.39385 3.41767 3.45956 3.48089 4.49647 4.76710 4.90775 5.12624 5.20388 5.34976 5.41122 5.48556 5.53057 5.61414 5.65964 5.70814 5.77293 5.92243 6.03243 6.09078 6.18947 6.21234 6.31555 6.41591 6.47975 6.54779 6.71275 6.77836 6.85696 6.89519 6.99972 7.28819 7.59410 7.80067 7.93363 8.43126 8.51181 9.20217 9.83676 10.39880 11.28173 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.016137 B = 0.010241 C = 0.007661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.779425 B = 2733.531580 C = 3653.802964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.520 3.480 3 O -0.555 6.555 4 N -0.614 5.614 5 C 0.101 3.899 6 C -0.123 4.123 7 C -0.093 4.093 8 C 0.127 3.873 9 C -0.092 4.092 10 C -0.138 4.138 11 C 0.144 3.856 12 N -0.591 5.591 13 C -0.249 4.249 14 H 0.066 0.934 15 C 0.004 3.996 16 N -0.903 5.903 17 Si 0.898 3.102 18 H -0.287 1.287 19 H -0.291 1.291 20 H -0.278 1.278 21 C 0.188 3.812 22 H 0.087 0.913 23 H 0.083 0.917 24 H 0.086 0.914 25 H 0.075 0.925 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.083 0.917 29 H 0.053 0.947 30 H 0.085 0.915 31 H 0.059 0.941 32 H 0.047 0.953 33 H 0.051 0.949 34 H 0.059 0.941 35 H 0.018 0.982 36 H 0.053 0.947 37 H 0.253 0.747 38 H 0.091 0.909 39 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.383 -0.855 -10.248 11.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.309 3.691 3 O -0.434 6.434 4 N -0.347 5.347 5 C -0.022 4.022 6 C -0.162 4.162 7 C -0.096 4.096 8 C 0.005 3.995 9 C -0.130 4.130 10 C -0.177 4.177 11 C 0.018 3.982 12 N -0.313 5.313 13 C -0.379 4.379 14 H 0.084 0.916 15 C -0.194 4.194 16 N -0.548 5.548 17 Si 0.728 3.272 18 H -0.214 1.214 19 H -0.218 1.218 20 H -0.204 1.204 21 C 0.062 3.938 22 H 0.106 0.894 23 H 0.101 0.899 24 H 0.104 0.896 25 H 0.093 0.907 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.102 0.898 29 H 0.071 0.929 30 H 0.103 0.897 31 H 0.078 0.922 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.036 0.964 36 H 0.071 0.929 37 H 0.063 0.937 38 H 0.109 0.891 39 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -5.197 -0.277 -10.088 11.352 hybrid contribution -0.225 0.440 0.798 0.939 sum -5.422 0.163 -9.290 10.758 Atomic orbital electron populations 1.21876 0.92153 1.04845 1.03875 1.20371 0.90139 0.82310 0.76298 1.90696 1.70919 1.30824 1.50993 1.48638 1.08281 1.05599 1.72229 1.22423 0.96293 0.82149 1.01309 1.22790 0.94609 0.99143 0.99611 1.21856 0.93696 0.93771 1.00251 1.21951 0.78843 0.96520 1.02194 1.21259 0.94782 1.00244 0.96716 1.22077 0.96476 1.00564 0.98612 1.20914 0.90729 0.96885 0.89700 1.44057 1.01956 1.66899 1.18368 1.19194 1.15348 1.14428 0.88889 0.91641 1.24973 1.00987 0.96268 0.97208 1.70025 1.28709 1.22197 1.33883 0.86350 0.78258 0.80600 0.81998 1.21433 1.21758 1.20378 1.20683 0.89874 0.94896 0.88396 0.89385 0.89870 0.89567 0.90707 0.91332 0.91385 0.89819 0.92893 0.89712 0.92217 0.93423 0.93055 0.92253 0.96448 0.92880 0.93733 0.89137 0.96118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.03 9.32 36.01 0.34 -1.69 16 2 C 0.52 9.24 7.96 -10.99 -0.09 9.16 16 3 O -0.56 -12.28 17.41 5.56 0.10 -12.18 16 4 N -0.61 -10.75 3.33 -170.52 -0.57 -11.31 16 5 C 0.10 1.44 6.40 -2.29 -0.01 1.42 16 6 C -0.12 -1.75 6.01 -24.75 -0.15 -1.90 16 7 C -0.09 -1.66 0.54 -154.08 -0.08 -1.74 16 8 C 0.13 2.46 5.05 -3.32 -0.02 2.44 16 9 C -0.09 -1.48 4.52 -27.03 -0.12 -1.60 16 10 C -0.14 -2.37 5.92 -26.55 -0.16 -2.53 16 11 C 0.14 2.97 6.49 -3.70 -0.02 2.94 16 12 N -0.59 -14.38 2.62 -172.68 -0.45 -14.84 16 13 C -0.25 -6.79 9.60 -15.06 -0.14 -6.93 16 14 H 0.07 1.79 7.89 -52.49 -0.41 1.37 16 15 C 0.00 0.11 4.92 -17.43 -0.09 0.02 16 16 N -0.90 -25.59 11.17 55.49 0.62 -24.97 16 17 Si 0.90 22.09 29.59 -169.99 -5.03 17.06 16 18 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 19 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 21 C 0.19 4.20 3.73 -4.04 -0.02 4.19 16 22 H 0.09 1.01 8.12 -51.93 -0.42 0.59 16 23 H 0.08 0.79 7.86 -51.93 -0.41 0.38 16 24 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 25 H 0.07 1.15 7.89 -51.93 -0.41 0.74 16 26 H 0.07 0.74 7.49 -51.93 -0.39 0.36 16 27 H 0.07 0.85 8.02 -51.93 -0.42 0.44 16 28 H 0.08 1.13 7.98 -51.93 -0.41 0.72 16 29 H 0.05 1.01 7.61 -51.93 -0.40 0.62 16 30 H 0.08 2.00 7.55 -51.93 -0.39 1.61 16 31 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.05 0.69 8.11 -51.93 -0.42 0.27 16 33 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.06 1.08 7.28 -51.93 -0.38 0.70 16 35 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.05 1.09 7.93 -51.93 -0.41 0.67 16 37 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 38 H 0.09 2.30 5.61 -51.93 -0.29 2.01 16 39 H 0.02 0.49 8.11 -51.93 -0.42 0.07 16 LS Contribution 304.22 15.07 4.58 4.58 Total: -1.00 -31.61 304.22 -7.72 -39.33 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: -6.41 Total: -1.45 kcal Atomic # 6 Polarization: 4.35 SS G_CDS: -0.56 Total: 3.78 kcal Atomic # 7 Polarization: -50.71 SS G_CDS: -0.40 Total: -51.12 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: 0.10 Total: -12.18 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.03 Total: 17.06 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.61 -7.72 -39.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040025554.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.944 kcal (2) G-P(sol) polarization free energy of solvation -31.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds