Wall clock time and date at job start Sun Mar 29 2020 22:55:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21281 * 119.99880 * 2 1 4 4 N 1.34770 * 119.99975 * 179.72029 * 2 1 3 5 5 C 1.47491 * 125.66530 * 359.96892 * 4 2 1 6 6 C 1.55273 * 104.78116 * 155.88286 * 5 4 2 7 7 C 1.54481 * 101.42298 * 36.67531 * 6 5 4 8 8 C 1.47188 * 125.66218 * 180.27599 * 4 2 1 9 9 C 1.52243 * 110.29395 * 206.46550 * 7 6 5 10 10 C 1.53160 * 109.64837 * 178.00030 * 9 7 6 11 11 C 1.53196 * 109.27333 * 60.18449 * 10 9 7 12 12 N 1.46936 * 108.92122 * 304.77024 * 11 10 9 13 13 C 1.36932 * 120.70051 * 234.13182 * 12 11 10 14 14 H 1.08001 * 119.99871 * 27.25956 * 13 12 11 15 15 C 1.38813 * 120.00073 * 207.25440 * 13 12 11 16 16 N 1.31622 * 119.99863 * 17.20863 * 15 13 12 17 17 Si 1.86799 * 119.99853 * 197.20730 * 15 13 12 18 18 H 1.48505 * 109.47235 * 90.00380 * 17 15 13 19 19 H 1.48507 * 109.47179 * 209.99762 * 17 15 13 20 20 H 1.48495 * 109.47433 * 329.99882 * 17 15 13 21 21 C 1.47073 * 118.59904 * 54.16234 * 12 11 10 22 22 H 1.09005 * 109.46937 * 0.02562 * 1 2 3 23 23 H 1.08993 * 109.47120 * 120.00371 * 1 2 3 24 24 H 1.09000 * 109.47003 * 240.00355 * 1 2 3 25 25 H 1.09001 * 110.34860 * 274.84923 * 5 4 2 26 26 H 1.09001 * 110.34960 * 37.12744 * 5 4 2 27 27 H 1.09006 * 111.22958 * 278.57869 * 6 5 4 28 28 H 1.08998 * 110.93660 * 154.64354 * 6 5 4 29 29 H 1.08994 * 109.90949 * 300.89646 * 8 4 2 30 30 H 1.08995 * 109.90913 * 62.16911 * 8 4 2 31 31 H 1.09001 * 109.44061 * 298.05565 * 9 7 6 32 32 H 1.08997 * 109.43838 * 57.98273 * 9 7 6 33 33 H 1.09003 * 109.50260 * 180.11618 * 10 9 7 34 34 H 1.08996 * 109.50766 * 300.24142 * 10 9 7 35 35 H 1.08993 * 109.56631 * 64.60297 * 11 10 9 36 36 H 1.08996 * 109.56218 * 184.94542 * 11 10 9 37 37 H 0.97003 * 119.99463 * 179.97438 * 16 15 13 38 38 H 1.08997 * 109.58266 * 187.74542 * 21 12 11 39 39 H 1.09001 * 109.58059 * 67.34950 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1671 0.0057 5 6 1.5731 -2.5110 0.0129 6 6 2.6581 -3.4397 -0.5963 7 6 3.9505 -2.8180 -0.0221 8 6 3.6456 -1.3123 0.0122 9 6 5.1293 -3.1078 -0.9409 10 6 6.3919 -2.4433 -0.3840 11 6 6.6858 -3.0051 1.0105 12 7 5.4992 -2.8225 1.8576 13 6 5.5929 -2.1794 3.0629 14 1 6.3641 -1.4403 3.2220 15 6 4.6965 -2.4774 4.0801 16 7 3.9873 -3.5849 4.0287 17 14 4.4970 -1.3064 5.5218 18 1 3.4337 -0.3170 5.2125 19 1 4.1200 -2.0751 6.7353 20 1 5.7786 -0.5964 5.7639 21 6 4.2089 -3.3457 1.3840 22 1 -0.3633 1.0277 -0.0005 23 1 -0.3633 -0.5139 -0.8899 24 1 -0.3633 -0.5138 0.8900 25 1 1.3387 -2.8155 1.0329 26 1 0.6742 -2.5238 -0.6035 27 1 2.6520 -3.3925 -1.6853 28 1 2.5311 -4.4658 -0.2510 29 1 4.0705 -0.8275 -0.8666 30 1 4.0583 -0.8706 0.9191 31 1 5.2839 -4.1850 -1.0040 32 1 4.9202 -2.7125 -1.9349 33 1 7.2338 -2.6505 -1.0447 34 1 6.2372 -1.3664 -0.3174 35 1 6.9200 -4.0669 0.9344 36 1 7.5312 -2.4736 1.4474 37 1 3.3612 -3.7933 4.7398 38 1 3.4131 -3.0136 2.0507 39 1 4.2412 -4.4351 1.3650 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040025554.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:55:44 Heat of formation + Delta-G solvation = -40.655827 kcal Electronic energy + Delta-G solvation = -20119.161207 eV Core-core repulsion = 17253.950839 eV Total energy + Delta-G solvation = -2865.210368 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.43306 -39.66045 -37.24574 -34.96016 -33.16127 -31.81662 -30.79002 -29.92912 -27.37538 -26.56158 -24.44607 -23.76186 -21.96391 -20.33092 -19.69340 -18.64189 -17.95675 -17.15771 -16.76449 -16.22662 -15.80949 -15.40360 -15.36680 -14.80059 -14.52529 -14.22216 -13.91558 -13.85033 -13.40731 -13.39672 -13.08331 -13.00730 -12.85111 -12.77355 -12.68290 -12.35960 -12.11355 -11.88020 -11.78779 -11.44381 -11.06246 -10.99245 -10.91626 -10.54156 -9.64029 -8.67288 -7.90278 -5.31950 1.38021 1.41828 1.48042 1.61425 2.12998 2.46172 3.22825 3.48532 3.65231 3.84081 3.90519 3.98944 4.26579 4.32844 4.36062 4.47438 4.50794 4.56183 4.62794 4.71150 4.77341 4.93145 4.96032 4.98332 5.04817 5.12665 5.17329 5.20254 5.24780 5.36070 5.37596 5.49839 5.57412 5.65245 5.77311 6.37900 6.61820 7.14287 7.15003 7.86791 8.36365 9.15270 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.016137 B = 0.010241 C = 0.007661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.779425 B = 2733.531580 C = 3653.802964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.506 3.494 3 O -0.612 6.612 4 N -0.618 5.618 5 C 0.099 3.901 6 C -0.113 4.113 7 C -0.089 4.089 8 C 0.134 3.866 9 C -0.088 4.088 10 C -0.129 4.129 11 C 0.138 3.862 12 N -0.610 5.610 13 C -0.258 4.258 14 H 0.056 0.944 15 C -0.041 4.041 16 N -0.925 5.925 17 Si 0.950 3.050 18 H -0.296 1.296 19 H -0.287 1.287 20 H -0.273 1.273 21 C 0.199 3.801 22 H 0.092 0.908 23 H 0.120 0.880 24 H 0.100 0.900 25 H 0.058 0.942 26 H 0.116 0.884 27 H 0.100 0.900 28 H 0.093 0.907 29 H 0.055 0.945 30 H 0.029 0.971 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.043 0.957 35 H 0.021 0.979 36 H 0.044 0.956 37 H 0.250 0.750 38 H 0.055 0.945 39 H 0.004 0.996 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.649 -1.628 -12.464 14.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.298 3.702 3 O -0.495 6.495 4 N -0.351 5.351 5 C -0.023 4.023 6 C -0.151 4.151 7 C -0.091 4.091 8 C 0.011 3.989 9 C -0.126 4.126 10 C -0.168 4.168 11 C 0.013 3.987 12 N -0.333 5.333 13 C -0.388 4.388 14 H 0.073 0.927 15 C -0.237 4.237 16 N -0.571 5.571 17 Si 0.779 3.221 18 H -0.223 1.223 19 H -0.213 1.213 20 H -0.198 1.198 21 C 0.074 3.926 22 H 0.111 0.889 23 H 0.139 0.861 24 H 0.118 0.882 25 H 0.076 0.924 26 H 0.135 0.865 27 H 0.118 0.882 28 H 0.111 0.889 29 H 0.073 0.927 30 H 0.048 0.952 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.103 0.897 34 H 0.061 0.939 35 H 0.039 0.961 36 H 0.063 0.937 37 H 0.059 0.941 38 H 0.073 0.927 39 H 0.022 0.978 Dipole moment (debyes) X Y Z Total from point charges -6.463 -1.082 -12.321 13.956 hybrid contribution 0.238 0.684 1.500 1.666 sum -6.225 -0.398 -10.822 12.491 Atomic orbital electron populations 1.21894 0.87246 1.06093 1.06239 1.21533 0.92481 0.81407 0.74811 1.90663 1.72523 1.32774 1.53501 1.48848 1.07574 1.07094 1.71571 1.22629 0.97994 0.80165 1.01487 1.22824 0.91773 0.99208 1.01306 1.21674 0.96779 0.92667 0.97959 1.21674 0.80507 0.97269 0.99454 1.21277 0.92962 1.01033 0.97348 1.21967 0.98645 0.99384 0.96824 1.21077 0.89284 0.97154 0.91196 1.44313 1.03938 1.66875 1.18152 1.19388 1.14959 1.14243 0.90255 0.92663 1.25529 1.01305 0.97548 0.99309 1.70131 1.29286 1.23269 1.34414 0.85529 0.77916 0.78856 0.79797 1.22339 1.21310 1.19764 1.20445 0.88044 0.93596 0.90553 0.88885 0.86133 0.88153 0.92411 0.86548 0.88160 0.88884 0.92698 0.95242 0.90934 0.90460 0.89706 0.93863 0.96115 0.93694 0.94075 0.92701 0.97838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.30 9.32 71.24 0.66 -2.63 16 2 C 0.51 17.56 7.96 87.66 0.70 18.26 16 3 O -0.61 -27.56 17.41 -3.03 -0.05 -27.62 16 4 N -0.62 -20.99 3.33 -811.78 -2.70 -23.70 16 5 C 0.10 2.54 6.40 86.97 0.56 3.09 16 6 C -0.11 -2.83 6.01 31.88 0.19 -2.64 16 7 C -0.09 -3.04 0.54 -51.91 -0.03 -3.07 16 8 C 0.13 5.22 5.05 86.47 0.44 5.66 16 9 C -0.09 -2.59 4.52 30.40 0.14 -2.46 16 10 C -0.13 -4.24 5.92 30.71 0.18 -4.06 16 11 C 0.14 5.71 6.49 86.36 0.56 6.28 16 12 N -0.61 -30.54 2.62 -700.24 -1.83 -32.38 16 13 C -0.26 -14.60 9.60 84.03 0.81 -13.79 16 14 H 0.06 3.15 7.89 -2.91 -0.02 3.13 16 15 C -0.04 -2.33 4.92 84.86 0.42 -1.91 16 16 N -0.92 -53.93 11.17 21.65 0.24 -53.69 16 17 Si 0.95 46.77 29.59 68.60 2.03 48.80 16 18 H -0.30 -14.85 7.11 99.48 0.71 -14.14 16 19 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 20 H -0.27 -13.03 7.11 99.48 0.71 -12.32 16 21 C 0.20 9.08 3.73 86.07 0.32 9.40 16 22 H 0.09 1.90 8.12 -2.38 -0.02 1.88 16 23 H 0.12 1.67 7.86 -2.39 -0.02 1.65 16 24 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 25 H 0.06 1.70 7.89 -2.39 -0.02 1.68 16 26 H 0.12 1.92 7.49 -2.39 -0.02 1.90 16 27 H 0.10 1.96 8.02 -2.38 -0.02 1.94 16 28 H 0.09 2.22 7.98 -2.39 -0.02 2.20 16 29 H 0.05 2.08 7.61 -2.39 -0.02 2.07 16 30 H 0.03 1.46 7.55 -2.39 -0.02 1.44 16 31 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.08 1.88 8.11 -2.39 -0.02 1.86 16 33 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 34 H 0.04 1.56 7.28 -2.39 -0.02 1.54 16 35 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.04 1.88 7.93 -2.39 -0.02 1.86 16 37 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 38 H 0.05 2.89 5.61 -2.39 -0.01 2.87 16 39 H 0.00 0.17 8.11 -2.39 -0.02 0.15 16 Total: -1.00 -73.26 304.22 3.64 -69.63 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: 1.01 Total: 6.82 kcal Atomic # 6 Polarization: 7.19 SS G_CDS: 4.94 Total: 12.14 kcal Atomic # 7 Polarization: -105.46 SS G_CDS: -4.30 Total: -109.76 kcal Atomic # 8 Polarization: -27.56 SS G_CDS: -0.05 Total: -27.62 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 2.03 Total: 48.80 kcal Total: -73.26 3.64 -69.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040025554.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.970 kcal (2) G-P(sol) polarization free energy of solvation -73.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds