Wall clock time and date at job start Sun Mar 29 2020 22:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 O 1.21275 * 119.99942 * 2 1 4 4 N 1.34779 * 119.99702 * 180.02562 * 2 1 3 5 5 C 1.47480 * 125.66430 * 0.02562 * 4 2 1 6 6 C 1.55019 * 104.89797 * 203.99840 * 5 4 2 7 7 C 1.54531 * 101.52636 * 323.61124 * 6 5 4 8 8 C 1.47180 * 125.65948 * 179.97438 * 4 2 1 9 9 C 1.52281 * 110.16333 * 276.40592 * 7 6 5 10 10 C 1.53311 * 109.41623 * 297.16800 * 9 7 6 11 11 N 1.46928 * 108.70756 * 306.49111 * 10 9 7 12 12 C 1.36938 * 120.56178 * 234.25580 * 11 10 9 13 13 H 1.08005 * 119.99925 * 27.91228 * 12 11 10 14 14 C 1.38807 * 120.00022 * 207.91476 * 12 11 10 15 15 N 1.31621 * 120.00063 * 17.45240 * 14 12 11 16 16 Si 1.86805 * 120.00068 * 197.45189 * 14 12 11 17 17 H 1.48501 * 109.46876 * 89.99793 * 16 14 12 18 18 H 1.48496 * 109.47248 * 210.00062 * 16 14 12 19 19 H 1.48507 * 109.46899 * 329.99816 * 16 14 12 20 20 C 1.46930 * 118.87791 * 54.23407 * 11 10 9 21 21 C 1.52272 * 110.15744 * 153.28253 * 7 6 5 22 22 H 1.08997 * 109.46970 * 240.00244 * 1 2 3 23 23 H 1.08996 * 109.46941 * 359.97438 * 1 2 3 24 24 H 1.08994 * 109.47377 * 120.00093 * 1 2 3 25 25 H 1.08997 * 110.35462 * 85.14024 * 5 4 2 26 26 H 1.09003 * 110.35190 * 322.85475 * 5 4 2 27 27 H 1.09003 * 111.01508 * 81.67590 * 6 5 4 28 28 H 1.09006 * 111.01260 * 205.54750 * 6 5 4 29 29 H 1.09001 * 109.90283 * 59.15997 * 8 4 2 30 30 H 1.08994 * 110.06631 * 297.98451 * 8 4 2 31 31 H 1.09008 * 109.47892 * 57.14691 * 9 7 6 32 32 H 1.08993 * 109.48140 * 177.18253 * 9 7 6 33 33 H 1.08995 * 109.59912 * 186.72342 * 10 9 7 34 34 H 1.09003 * 109.60304 * 66.25559 * 10 9 7 35 35 H 0.97002 * 119.99636 * 180.02562 * 15 14 12 36 36 H 1.08997 * 109.60499 * 186.00241 * 20 11 10 37 37 H 1.08999 * 109.72989 * 65.59966 * 20 11 10 38 38 H 1.09007 * 109.47615 * 182.81099 * 21 7 6 39 39 H 1.09001 * 109.47747 * 302.82729 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1673 -0.0005 5 6 1.5731 -2.5110 -0.0017 6 6 2.6555 -3.4386 0.6074 7 6 3.9506 -2.8182 0.0365 8 6 3.6455 -1.3125 -0.0011 9 6 4.2123 -3.3484 -1.3668 10 6 4.4354 -4.8639 -1.3056 11 7 5.4928 -5.1454 -0.3251 12 6 6.5907 -5.8839 -0.6777 13 1 6.9323 -5.8881 -1.7023 14 6 7.2646 -6.6271 0.2816 15 7 6.6806 -6.9065 1.4276 16 14 9.0003 -7.2307 -0.0538 17 1 9.9767 -6.2115 0.4080 18 1 9.2313 -8.5036 0.6753 19 1 9.1728 -7.4568 -1.5114 20 6 5.3525 -4.6207 1.0401 21 6 5.1236 -3.1066 0.9636 22 1 -0.3633 -0.5138 0.8900 23 1 -0.3633 1.0276 0.0005 24 1 -0.3634 -0.5138 -0.8899 25 1 1.3384 -2.8200 -1.0202 26 1 0.6744 -2.5211 0.6151 27 1 2.6452 -3.3889 1.6963 28 1 2.5292 -4.4652 0.2634 29 1 4.0670 -0.8264 0.8788 30 1 4.0647 -0.8711 -0.9053 31 1 3.3537 -3.1328 -2.0028 32 1 5.0994 -2.8667 -1.7778 33 1 4.7400 -5.2285 -2.2866 34 1 3.5127 -5.3574 -1.0000 35 1 7.1517 -7.4256 2.0981 36 1 6.2617 -4.8248 1.6056 37 1 4.5024 -5.0946 1.5309 38 1 6.0203 -2.6224 0.5767 39 1 4.9033 -2.7213 1.9592 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040560934.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:55:50 Heat of formation + Delta-G solvation = -19.313829 kcal Electronic energy + Delta-G solvation = -19548.955201 eV Core-core repulsion = 16684.670292 eV Total energy + Delta-G solvation = -2864.284909 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.32865 -38.44708 -35.84281 -33.15841 -31.16730 -30.16525 -29.76709 -29.26993 -26.59874 -23.92895 -23.12557 -22.19587 -20.90660 -19.30467 -18.04918 -17.00414 -16.31963 -16.15537 -15.26014 -14.87276 -14.39738 -14.02293 -13.59534 -13.54527 -13.18122 -12.92461 -12.70273 -12.66750 -12.35237 -12.27632 -11.99983 -11.49071 -11.30261 -11.11780 -10.78080 -10.70377 -10.45796 -10.27151 -10.10943 -9.89077 -9.84467 -9.54177 -9.40058 -8.58825 -8.45539 -6.67960 -5.80513 -3.22483 2.65171 3.07851 3.37318 3.44690 3.45280 4.48581 4.51002 4.73959 4.94072 5.04836 5.15197 5.24000 5.32214 5.36010 5.39070 5.48448 5.65727 5.68642 5.78641 5.92881 5.99619 6.09232 6.12641 6.20699 6.28381 6.34358 6.51622 6.62676 6.67079 6.72788 6.83171 6.95499 7.34932 7.59293 7.64831 7.78795 8.18395 8.43985 9.20324 9.83805 10.39948 11.27769 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.052238 B = 0.004994 C = 0.004952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.876914 B = 5605.906700 C = 5652.623286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.521 3.479 3 O -0.555 6.555 4 N -0.616 5.616 5 C 0.099 3.901 6 C -0.124 4.124 7 C -0.056 4.056 8 C 0.114 3.886 9 C -0.119 4.119 10 C 0.146 3.854 11 N -0.591 5.591 12 C -0.253 4.253 13 H 0.065 0.935 14 C 0.003 3.997 15 N -0.903 5.903 16 Si 0.901 3.099 17 H -0.288 1.288 18 H -0.292 1.292 19 H -0.279 1.279 20 C 0.173 3.827 21 C -0.127 4.127 22 H 0.086 0.914 23 H 0.089 0.911 24 H 0.086 0.914 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.093 0.907 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.050 0.950 32 H 0.060 0.940 33 H 0.053 0.947 34 H 0.020 0.980 35 H 0.253 0.747 36 H 0.087 0.913 37 H 0.020 0.980 38 H 0.057 0.943 39 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.613 7.734 -1.825 14.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.310 3.690 3 O -0.434 6.434 4 N -0.350 5.350 5 C -0.024 4.024 6 C -0.161 4.161 7 C -0.057 4.057 8 C -0.008 4.008 9 C -0.158 4.158 10 C 0.020 3.980 11 N -0.313 5.313 12 C -0.382 4.382 13 H 0.083 0.917 14 C -0.195 4.195 15 N -0.547 5.547 16 Si 0.731 3.269 17 H -0.215 1.215 18 H -0.218 1.218 19 H -0.205 1.205 20 C 0.047 3.953 21 C -0.166 4.166 22 H 0.104 0.896 23 H 0.108 0.892 24 H 0.104 0.896 25 H 0.087 0.913 26 H 0.091 0.909 27 H 0.092 0.908 28 H 0.111 0.889 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.038 0.962 35 H 0.063 0.937 36 H 0.105 0.895 37 H 0.038 0.962 38 H 0.076 0.924 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -11.270 8.248 -1.703 14.069 hybrid contribution 0.869 -0.378 -0.088 0.952 sum -10.400 7.869 -1.792 13.165 Atomic orbital electron populations 1.21883 0.91789 1.05046 1.04074 1.20464 0.90291 0.82188 0.76060 1.90706 1.70956 1.30857 1.50883 1.48684 1.07898 1.05887 1.72547 1.22452 0.97038 0.81907 1.00975 1.22884 0.93224 0.99476 1.00560 1.20979 0.95827 0.91555 0.97309 1.22124 0.79702 0.97281 1.01707 1.21931 1.00235 0.99581 0.94089 1.20949 0.91781 0.91383 0.93908 1.44035 1.19992 1.59784 1.07534 1.19205 1.02985 1.20780 0.95259 0.91731 1.25013 0.99326 0.97592 0.97607 1.70029 1.35807 1.40981 1.07896 0.86311 0.85040 0.77847 0.77696 1.21457 1.21797 1.20456 1.20786 1.01182 0.86532 0.86782 1.22119 0.96057 1.01836 0.96626 0.89567 0.89229 0.89578 0.91267 0.90944 0.90790 0.88859 0.91669 0.91748 0.93149 0.92099 0.92850 0.96248 0.93660 0.89463 0.96205 0.92421 0.93103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.50 9.33 36.01 0.34 -1.17 16 2 C 0.52 7.30 7.96 -10.98 -0.09 7.22 16 3 O -0.56 -10.18 17.41 5.56 0.10 -10.08 16 4 N -0.62 -8.40 3.33 -170.68 -0.57 -8.97 16 5 C 0.10 1.11 6.37 -2.44 -0.02 1.09 16 6 C -0.12 -1.70 4.92 -24.86 -0.12 -1.82 16 7 C -0.06 -0.88 0.55 -154.09 -0.09 -0.96 16 8 C 0.11 1.74 6.05 -3.32 -0.02 1.72 16 9 C -0.12 -1.95 4.74 -26.94 -0.13 -2.08 16 10 C 0.15 2.87 6.19 -3.65 -0.02 2.84 16 11 N -0.59 -14.12 2.98 -172.17 -0.51 -14.64 16 12 C -0.25 -6.76 9.57 -15.06 -0.14 -6.91 16 13 H 0.06 1.71 7.89 -52.48 -0.41 1.30 16 14 C 0.00 0.09 4.90 -17.43 -0.09 0.00 16 15 N -0.90 -25.59 11.20 55.49 0.62 -24.97 16 16 Si 0.90 21.41 29.59 -169.99 -5.03 16.38 16 17 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 18 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 20 C 0.17 3.91 5.03 -3.64 -0.02 3.89 16 21 C -0.13 -2.31 4.72 -26.94 -0.13 -2.44 16 22 H 0.09 0.62 7.85 -51.93 -0.41 0.21 16 23 H 0.09 0.76 8.12 -51.93 -0.42 0.34 16 24 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.07 0.72 7.74 -51.93 -0.40 0.31 16 26 H 0.07 0.64 7.48 -51.93 -0.39 0.25 16 27 H 0.07 1.02 8.01 -51.93 -0.42 0.60 16 28 H 0.09 1.36 6.08 -51.93 -0.32 1.05 16 29 H 0.06 1.04 7.78 -51.93 -0.40 0.64 16 30 H 0.06 1.02 7.83 -51.93 -0.41 0.61 16 31 H 0.05 0.73 7.47 -51.92 -0.39 0.34 16 32 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.05 1.05 7.93 -51.93 -0.41 0.64 16 34 H 0.02 0.38 6.47 -51.93 -0.34 0.04 16 35 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 36 H 0.09 2.26 6.02 -51.93 -0.31 1.95 16 37 H 0.02 0.46 7.56 -51.93 -0.39 0.07 16 38 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.05 0.85 8.11 -51.93 -0.42 0.43 16 LS Contribution 301.25 15.07 4.54 4.54 Total: -1.00 -30.95 301.25 -7.61 -38.57 By element: Atomic # 1 Polarization: 4.02 SS G_CDS: -6.24 Total: -2.22 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: -0.52 Total: 1.38 kcal Atomic # 7 Polarization: -48.11 SS G_CDS: -0.46 Total: -48.57 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.10 Total: -10.08 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.03 Total: 16.38 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -30.95 -7.61 -38.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040560934.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.252 kcal (2) G-P(sol) polarization free energy of solvation -30.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds