Wall clock time and date at job start Sun Mar 29 2020 23:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21284 * 120.00142 * 2 1 4 4 N 1.34776 * 120.00229 * 179.97438 * 2 1 3 5 5 C 1.46493 * 120.00062 * 180.02562 * 4 2 1 6 6 C 1.53004 * 109.46874 * 180.02562 * 5 4 2 7 7 H 1.08997 * 109.43723 * 300.04611 * 6 5 4 8 8 C 1.53146 * 109.43716 * 59.96093 * 6 5 4 9 9 C 1.53705 * 108.87593 * 66.17421 * 8 6 5 10 10 H 1.09005 * 112.09827 * 187.61466 * 9 8 6 11 11 C 1.54602 * 107.83242 * 312.22795 * 9 8 6 12 12 C 1.54821 * 104.65386 * 88.55207 * 11 9 8 13 13 C 1.54610 * 104.65345 * 0.02562 * 12 11 9 14 14 H 1.08997 * 112.69983 * 147.18814 * 13 12 11 15 15 C 1.53152 * 109.43478 * 180.18427 * 6 5 4 16 16 N 1.48293 * 107.27530 * 64.01093 * 9 8 6 17 17 C 1.36933 * 128.21290 * 107.39713 * 16 9 8 18 18 H 1.07995 * 120.00518 * 164.81230 * 17 16 9 19 19 C 1.38817 * 119.99939 * 344.80809 * 17 16 9 20 20 N 1.31627 * 119.99649 * 351.63272 * 19 17 16 21 21 Si 1.86797 * 120.00110 * 171.62701 * 19 17 16 22 22 H 1.48497 * 109.47182 * 180.02562 * 21 19 17 23 23 H 1.48498 * 109.46868 * 300.00157 * 21 19 17 24 24 H 1.48499 * 109.47144 * 60.00066 * 21 19 17 25 25 H 1.08997 * 109.47273 * 270.00554 * 1 2 3 26 26 H 1.09003 * 109.47043 * 30.00936 * 1 2 3 27 27 H 1.08998 * 109.46655 * 149.99833 * 1 2 3 28 28 H 0.97005 * 119.99563 * 0.02562 * 4 2 1 29 29 H 1.09000 * 109.47285 * 59.99992 * 5 4 2 30 30 H 1.08995 * 109.47385 * 300.00050 * 5 4 2 31 31 H 1.09001 * 109.56536 * 306.35724 * 8 6 5 32 32 H 1.08994 * 109.66835 * 186.05089 * 8 6 5 33 33 H 1.09003 * 110.38351 * 207.48734 * 11 9 8 34 34 H 1.09001 * 110.38567 * 329.84792 * 11 9 8 35 35 H 1.08995 * 110.33754 * 241.26351 * 12 11 9 36 36 H 1.09003 * 110.52611 * 118.83168 * 12 11 9 37 37 H 1.08999 * 109.56960 * 53.63928 * 15 6 5 38 38 H 1.08996 * 109.56956 * 174.00779 * 15 6 5 39 39 H 0.96999 * 119.99411 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6459 -1.1671 0.0011 6 6 4.1559 -2.6097 0.0010 7 1 3.7912 -3.1234 0.8904 8 6 3.6446 -3.3308 -1.2496 9 6 4.2879 -2.6912 -2.4904 10 1 3.8612 -3.0747 -3.4173 11 6 4.1473 -1.1572 -2.3590 12 6 5.4095 -0.7136 -1.5799 13 6 6.1881 -2.0234 -1.3182 14 1 7.2683 -1.8772 -1.3151 15 6 5.6874 -2.6087 0.0062 16 7 5.7484 -2.9331 -2.4034 17 6 6.5097 -3.7959 -3.1457 18 1 7.5853 -3.6992 -3.1511 19 6 5.8990 -4.7951 -3.8911 20 7 4.6088 -5.0197 -3.7584 21 14 6.9080 -5.8207 -5.0824 22 1 6.0274 -6.8119 -5.7511 23 1 7.5194 -4.9336 -6.1043 24 1 7.9793 -6.5316 -4.3392 25 1 -0.3634 0.0001 1.0276 26 1 -0.3633 0.8899 -0.5140 27 1 -0.3632 -0.8900 -0.5139 28 1 1.6959 -2.0072 0.0005 29 1 4.0089 -0.6531 0.8911 30 1 4.0096 -0.6535 -0.8888 31 1 2.5606 -3.2339 -1.3093 32 1 3.9148 -4.3856 -1.2010 33 1 4.1235 -0.6923 -3.3446 34 1 3.2476 -0.9051 -1.7976 35 1 5.1275 -0.2445 -0.6373 36 1 6.0089 -0.0297 -2.1809 37 1 6.0493 -2.0007 0.8353 38 1 6.0527 -3.6300 0.1133 39 1 4.1820 -5.7177 -4.2796 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048488904.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:03:10 Heat of formation + Delta-G solvation = 75.447940 kcal Electronic energy + Delta-G solvation = -20253.598746 eV Core-core repulsion = 17393.423016 eV Total energy + Delta-G solvation = -2860.175730 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.20192 -38.76941 -34.63877 -32.87945 -31.42079 -30.65395 -30.04898 -29.27405 -26.24256 -23.50163 -23.23858 -20.67547 -20.46843 -19.40840 -18.67007 -17.05296 -16.67425 -16.13148 -15.22861 -14.85771 -14.46447 -13.82990 -13.40379 -12.97353 -12.84667 -12.66129 -12.55990 -12.18553 -11.91262 -11.65524 -11.41746 -11.38151 -11.19931 -10.81358 -10.71668 -10.56161 -10.17775 -9.87510 -9.63214 -9.47944 -9.39281 -9.33412 -9.19744 -8.59439 -8.08280 -6.79164 -5.76139 -3.10681 2.86856 3.38962 3.44148 3.44736 3.57893 4.47406 4.99798 5.23369 5.26295 5.33550 5.38752 5.49031 5.52319 5.62451 5.76769 5.82980 5.85614 5.94571 6.09617 6.12059 6.19845 6.30461 6.45794 6.51583 6.60327 6.66917 6.73654 6.84621 6.86616 6.94930 7.08740 7.13403 7.56612 7.59220 7.77019 7.81034 8.25656 8.48159 9.14853 9.76787 10.56637 11.36010 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.036369 B = 0.006538 C = 0.006177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.698247 B = 4281.610099 C = 4531.580167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.502 3.498 3 O -0.557 6.557 4 N -0.720 5.720 5 C 0.002 3.998 6 C -0.087 4.087 7 H 0.049 0.951 8 C -0.110 4.110 9 C 0.182 3.818 10 H 0.110 0.890 11 C -0.175 4.175 12 C -0.160 4.160 13 C 0.148 3.852 14 H 0.066 0.934 15 C -0.121 4.121 16 N -0.584 5.584 17 C -0.221 4.221 18 H 0.074 0.926 19 C -0.006 4.006 20 N -0.914 5.914 21 Si 0.910 3.090 22 H -0.291 1.291 23 H -0.286 1.286 24 H -0.285 1.285 25 H 0.088 0.912 26 H 0.089 0.911 27 H 0.078 0.922 28 H 0.396 0.604 29 H 0.044 0.956 30 H 0.194 0.806 31 H 0.036 0.964 32 H 0.074 0.926 33 H 0.050 0.950 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.055 0.945 37 H 0.045 0.955 38 H 0.065 0.935 39 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.170 5.530 7.023 10.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.289 3.711 3 O -0.436 6.436 4 N -0.371 5.371 5 C -0.118 4.118 6 C -0.106 4.106 7 H 0.068 0.932 8 C -0.150 4.150 9 C 0.076 3.924 10 H 0.128 0.872 11 C -0.213 4.213 12 C -0.199 4.199 13 C 0.040 3.960 14 H 0.085 0.915 15 C -0.161 4.161 16 N -0.305 5.305 17 C -0.350 4.350 18 H 0.092 0.908 19 C -0.203 4.203 20 N -0.560 5.560 21 Si 0.740 3.260 22 H -0.217 1.217 23 H -0.213 1.213 24 H -0.212 1.212 25 H 0.106 0.894 26 H 0.108 0.892 27 H 0.097 0.903 28 H 0.230 0.770 29 H 0.062 0.938 30 H 0.209 0.791 31 H 0.055 0.945 32 H 0.093 0.907 33 H 0.069 0.931 34 H 0.111 0.889 35 H 0.108 0.892 36 H 0.074 0.926 37 H 0.064 0.936 38 H 0.083 0.917 39 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -5.714 6.029 6.845 10.764 hybrid contribution 0.157 -1.247 -0.284 1.289 sum -5.557 4.782 6.562 9.839 Atomic orbital electron populations 1.21887 0.92534 1.04695 1.04244 1.20711 0.90354 0.83810 0.76241 1.90691 1.70890 1.31492 1.50550 1.46426 1.08659 1.08195 1.73856 1.25178 0.78513 1.00237 1.07824 1.21272 0.96519 0.94036 0.98814 0.93245 1.22060 0.97009 1.01068 0.94834 1.21481 0.85149 0.88129 0.97689 0.87212 1.23655 0.97499 1.01023 0.99108 1.23460 0.97323 0.99008 1.00078 1.21453 0.96376 0.89759 0.88420 0.91544 1.22050 0.94294 1.01449 0.98349 1.45165 1.03897 1.44745 1.36673 1.18958 0.89962 1.05992 1.20061 0.90844 1.24823 0.96308 0.97786 1.01351 1.69844 1.08924 1.34030 1.43231 0.86238 0.78942 0.79751 0.81036 1.21683 1.21258 1.21207 0.89375 0.89202 0.90261 0.76996 0.93763 0.79111 0.94514 0.90732 0.93141 0.88930 0.89248 0.92642 0.93622 0.91664 0.93742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.67 10.30 36.01 0.37 -1.30 16 2 C 0.50 7.27 7.69 -10.99 -0.08 7.19 16 3 O -0.56 -10.40 17.10 5.55 0.09 -10.30 16 4 N -0.72 -10.15 4.38 -60.30 -0.26 -10.41 16 5 C 0.00 0.02 2.68 -4.04 -0.01 0.01 16 6 C -0.09 -1.51 2.76 -90.46 -0.25 -1.76 16 7 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 8 C -0.11 -2.19 5.20 -26.29 -0.14 -2.33 16 9 C 0.18 4.08 3.16 -65.73 -0.21 3.88 16 10 H 0.11 2.85 6.28 -51.93 -0.33 2.52 16 11 C -0.17 -3.38 5.74 -24.93 -0.14 -3.52 16 12 C -0.16 -2.93 5.74 -24.93 -0.14 -3.07 16 13 C 0.15 2.98 4.29 -66.00 -0.28 2.70 16 14 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 15 C -0.12 -2.21 5.35 -26.54 -0.14 -2.35 16 16 N -0.58 -14.11 2.82 -153.06 -0.43 -14.54 16 17 C -0.22 -5.94 10.38 -15.06 -0.16 -6.09 16 18 H 0.07 1.93 7.84 -52.49 -0.41 1.52 16 19 C -0.01 -0.16 5.43 -17.43 -0.09 -0.26 16 20 N -0.91 -25.31 10.59 55.49 0.59 -24.72 16 21 Si 0.91 21.54 29.56 -169.99 -5.03 16.51 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 25 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 27 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.40 4.80 7.31 -40.82 -0.30 4.50 16 29 H 0.04 0.73 8.00 -51.93 -0.42 0.32 16 30 H 0.19 3.35 1.12 -165.81 -0.19 3.16 16 31 H 0.04 0.65 6.71 -51.93 -0.35 0.30 16 32 H 0.07 1.75 8.03 -51.93 -0.42 1.33 16 33 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.09 1.67 3.94 -51.93 -0.20 1.47 16 35 H 0.09 1.52 4.83 -51.93 -0.25 1.27 16 36 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 39 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 290.17 15.07 4.37 4.37 Total: -1.00 -30.10 290.17 -7.75 -37.84 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: -5.80 Total: 8.15 kcal Atomic # 6 Polarization: -5.63 SS G_CDS: -1.28 Total: -6.91 kcal Atomic # 7 Polarization: -49.56 SS G_CDS: -0.11 Total: -49.67 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: 0.09 Total: -10.30 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.03 Total: 16.51 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -30.10 -7.75 -37.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048488904.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.290 kcal (2) G-P(sol) polarization free energy of solvation -30.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds