Wall clock time and date at job start Sun Mar 29 2020 23:26:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46492 * 120.00169 * 2 1 4 4 C 1.52994 * 109.47464 * 84.36828 * 3 2 1 5 5 H 1.09008 * 112.77982 * 316.24158 * 4 3 2 6 6 C 1.53761 * 113.55470 * 87.09245 * 4 3 2 7 7 C 1.53496 * 83.25566 * 140.98980 * 6 4 3 8 8 N 1.47060 * 87.98852 * 333.76575 * 7 6 4 9 9 C 1.36940 * 136.05590 * 207.08746 * 8 7 6 10 10 H 1.08000 * 119.99815 * 172.13379 * 9 8 7 11 11 C 1.38803 * 120.00019 * 351.85199 * 9 8 7 12 12 N 1.31623 * 120.00230 * 0.27599 * 11 9 8 13 13 Si 1.86808 * 120.00051 * 180.27904 * 11 9 8 14 14 H 1.48498 * 109.46919 * 59.99770 * 13 11 9 15 15 H 1.48502 * 109.47276 * 180.02562 * 13 11 9 16 16 H 1.48505 * 109.46884 * 299.99904 * 13 11 9 17 17 C 1.34777 * 119.99732 * 179.97438 * 2 1 3 18 18 O 1.21285 * 119.99835 * 180.02562 * 17 2 1 19 19 C 1.50702 * 120.00169 * 0.02562 * 17 2 1 20 20 C 1.53783 * 113.61374 * 279.13678 * 19 17 2 21 21 C 1.53949 * 87.02360 * 220.04822 * 20 19 17 22 22 C 1.53777 * 113.61472 * 181.53065 * 19 17 2 23 23 H 1.09003 * 109.46576 * 89.97791 * 1 2 3 24 24 H 1.08998 * 109.47217 * 209.97161 * 1 2 3 25 25 H 1.08998 * 109.47183 * 329.97974 * 1 2 3 26 26 H 1.09000 * 109.47591 * 324.36555 * 3 2 1 27 27 H 1.09007 * 109.47071 * 204.37059 * 3 2 1 28 28 H 1.08996 * 114.39068 * 27.43096 * 6 4 3 29 29 H 1.09000 * 114.26529 * 254.54591 * 6 4 3 30 30 H 1.09006 * 113.46464 * 218.98143 * 7 6 4 31 31 H 1.09002 * 113.52099 * 88.55926 * 7 6 4 32 32 H 0.97001 * 119.99775 * 180.02562 * 12 11 9 33 33 H 1.08994 * 112.85089 * 50.33009 * 19 17 2 34 34 H 1.09000 * 113.61611 * 334.56933 * 20 19 17 35 35 H 1.09000 * 113.61669 * 105.46564 * 20 19 17 36 36 H 1.09003 * 113.54059 * 270.81589 * 21 20 19 37 37 H 1.08990 * 113.67268 * 139.93080 * 21 20 19 38 38 H 1.08995 * 113.61297 * 254.52539 * 22 19 17 39 39 H 1.09002 * 113.61774 * 25.43482 * 22 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.3300 1.7811 1.4354 5 1 1.4047 1.6876 2.0041 6 6 3.5606 1.2293 2.1738 7 6 3.6358 2.6546 2.7385 8 7 2.9412 3.1156 1.5269 9 6 2.8841 4.2779 0.8050 10 1 2.3696 4.2992 -0.1443 11 6 3.4825 5.4300 1.2962 12 7 4.1094 5.4041 2.4532 13 14 3.3979 7.0175 0.3151 14 1 1.9774 7.4050 0.1223 15 1 4.1095 8.0930 1.0514 16 1 4.0401 6.8160 -1.0087 17 6 2.1389 -1.1672 0.0005 18 8 3.3517 -1.1673 0.0010 19 6 1.3853 -2.4723 0.0005 20 6 0.8830 -2.8936 1.3916 21 6 1.2807 -4.3314 1.0114 22 6 2.2971 -3.7101 0.0388 23 1 -0.3632 0.0004 -1.0277 24 1 -0.3633 -0.8902 0.5134 25 1 -0.3633 0.8898 0.5141 26 1 1.6560 2.0010 -0.5987 27 1 3.1899 1.1152 -0.4241 28 1 4.3933 0.9618 1.5234 29 1 3.3319 0.4656 2.9171 30 1 4.6541 3.0337 2.8259 31 1 3.0552 2.7924 3.6507 32 1 4.5272 6.2094 2.7965 33 1 0.6187 -2.5185 -0.7729 34 1 1.4704 -2.4805 2.2116 35 1 -0.1899 -2.7579 1.5280 36 1 0.4846 -4.8865 0.5151 37 1 1.7413 -4.8883 1.8273 38 1 2.3641 -4.2326 -0.9154 39 1 3.2719 -3.5207 0.4882 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085449123.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:26:18 Heat of formation + Delta-G solvation = 44.112745 kcal Electronic energy + Delta-G solvation = -19162.775153 eV Core-core repulsion = 16301.240626 eV Total energy + Delta-G solvation = -2861.534526 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.30038 -38.27323 -37.11502 -35.12686 -32.15434 -28.99159 -27.83106 -26.91816 -25.73685 -25.57744 -23.34202 -22.19313 -20.08687 -19.12943 -18.72590 -17.23423 -16.55823 -16.04528 -15.57146 -15.14998 -14.65657 -14.12671 -13.89871 -13.57258 -12.97852 -12.76402 -12.66124 -12.51527 -12.17618 -12.01909 -11.81683 -11.41676 -11.26992 -11.02566 -10.79820 -10.72055 -10.63274 -10.51255 -10.37989 -9.81698 -9.75972 -9.49898 -9.25721 -8.74608 -8.19638 -6.81128 -5.73500 -3.05502 2.85765 3.26596 3.41480 3.45507 3.46926 4.41197 4.47971 4.50238 4.58625 4.69450 4.97558 5.20321 5.30652 5.39792 5.44853 5.52344 5.53172 5.65502 5.67388 5.71946 5.75547 5.85361 5.96554 5.98776 6.07778 6.15316 6.31466 6.46509 6.58955 6.74335 6.82121 6.90508 7.30809 7.51930 7.62384 7.69166 8.02260 8.46951 9.07234 9.74311 10.71328 11.44878 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.042067 B = 0.004895 C = 0.004696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.438353 B = 5718.266606 C = 5961.329369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.610 5.610 3 C 0.113 3.887 4 C 0.131 3.869 5 H 0.039 0.961 6 C -0.157 4.157 7 C 0.158 3.842 8 N -0.601 5.601 9 C -0.219 4.219 10 H 0.079 0.921 11 C -0.006 4.006 12 N -0.918 5.918 13 Si 0.910 3.090 14 H -0.285 1.285 15 H -0.290 1.290 16 H -0.284 1.284 17 C 0.519 3.481 18 O -0.535 6.535 19 C -0.137 4.137 20 C -0.123 4.123 21 C -0.142 4.142 22 C -0.118 4.118 23 H 0.051 0.949 24 H 0.069 0.931 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.087 0.913 28 H 0.080 0.920 29 H 0.048 0.952 30 H 0.061 0.939 31 H 0.025 0.975 32 H 0.254 0.746 33 H 0.108 0.892 34 H 0.087 0.913 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.984 -17.082 -3.332 19.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.343 5.343 3 C -0.010 4.010 4 C 0.023 3.977 5 H 0.056 0.944 6 C -0.195 4.195 7 C 0.032 3.968 8 N -0.327 5.327 9 C -0.347 4.347 10 H 0.096 0.904 11 C -0.203 4.203 12 N -0.565 5.565 13 Si 0.740 3.260 14 H -0.212 1.212 15 H -0.216 1.216 16 H -0.210 1.210 17 C 0.306 3.694 18 O -0.411 6.411 19 C -0.159 4.159 20 C -0.161 4.161 21 C -0.180 4.180 22 C -0.156 4.156 23 H 0.070 0.930 24 H 0.088 0.912 25 H 0.092 0.908 26 H 0.088 0.912 27 H 0.106 0.894 28 H 0.099 0.901 29 H 0.066 0.934 30 H 0.080 0.920 31 H 0.042 0.958 32 H 0.064 0.936 33 H 0.126 0.874 34 H 0.105 0.895 35 H 0.092 0.908 36 H 0.099 0.901 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -8.257 -16.675 -3.402 18.916 hybrid contribution -0.406 1.159 -0.427 1.301 sum -8.663 -15.516 -3.830 18.178 Atomic orbital electron populations 1.21782 0.80166 1.03220 1.01370 1.47882 1.06720 1.06592 1.73136 1.21869 0.97528 0.82551 0.99016 1.22467 0.95047 0.87145 0.93082 0.94390 1.23682 0.98714 0.97407 0.99742 1.21937 0.97788 0.87763 0.89323 1.45658 1.50652 1.08279 1.28095 1.18832 1.31135 0.85177 0.99533 0.90355 1.24835 1.01058 0.97508 0.96879 1.69847 1.39583 1.27854 1.19171 0.86236 0.77529 0.83172 0.79041 1.21193 1.21559 1.21045 1.20448 0.87960 0.84964 0.76029 1.90685 1.13856 1.87146 1.49445 1.22774 0.99969 0.93019 1.00098 1.22867 1.01268 0.96429 0.95545 1.22861 0.99280 0.96103 0.99711 1.22791 0.98593 0.94191 0.99994 0.93010 0.91229 0.90813 0.91192 0.89426 0.90099 0.93377 0.92027 0.95756 0.93615 0.87423 0.89476 0.90844 0.90125 0.91073 0.91299 0.88643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.86 10.15 59.85 0.61 1.46 16 2 N -0.61 -9.23 2.87 -181.57 -0.52 -9.75 16 3 C 0.11 2.15 5.42 -4.05 -0.02 2.12 16 4 C 0.13 2.79 4.31 -72.27 -0.31 2.48 16 5 H 0.04 0.81 8.14 -51.92 -0.42 0.38 16 6 C -0.16 -3.35 8.03 -26.08 -0.21 -3.56 16 7 C 0.16 3.95 7.22 -8.51 -0.06 3.89 16 8 N -0.60 -15.86 3.64 -176.85 -0.64 -16.50 16 9 C -0.22 -6.21 10.55 -15.06 -0.16 -6.37 16 10 H 0.08 2.11 7.83 -52.49 -0.41 1.69 16 11 C -0.01 -0.17 5.50 -17.43 -0.10 -0.26 16 12 N -0.92 -27.96 11.73 55.49 0.65 -27.31 16 13 Si 0.91 22.38 29.55 -169.99 -5.02 17.35 16 14 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 15 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 16 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 17 C 0.52 7.98 7.20 -10.98 -0.08 7.90 16 18 O -0.53 -10.35 15.41 5.55 0.09 -10.26 16 19 C -0.14 -1.49 2.80 -90.96 -0.25 -1.75 16 20 C -0.12 -1.15 6.85 -25.83 -0.18 -1.32 16 21 C -0.14 -1.16 8.09 -25.83 -0.21 -1.37 16 22 C -0.12 -1.23 7.40 -25.92 -0.19 -1.42 16 23 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 24 H 0.07 0.60 5.65 -51.93 -0.29 0.31 16 25 H 0.07 0.84 8.07 -51.93 -0.42 0.42 16 26 H 0.07 1.32 8.11 -51.93 -0.42 0.90 16 27 H 0.09 1.86 7.00 -51.93 -0.36 1.50 16 28 H 0.08 1.81 7.95 -51.93 -0.41 1.40 16 29 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.06 1.69 7.50 -51.93 -0.39 1.30 16 31 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 33 H 0.11 0.96 7.91 -51.93 -0.41 0.54 16 34 H 0.09 0.95 8.09 -51.93 -0.42 0.53 16 35 H 0.07 0.55 7.60 -51.93 -0.39 0.16 16 36 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.10 1.19 7.45 -51.93 -0.39 0.80 16 LS Contribution 316.55 15.07 4.77 4.77 Total: -1.00 -33.02 316.55 -8.26 -41.29 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: -6.42 Total: -1.40 kcal Atomic # 6 Polarization: 2.98 SS G_CDS: -1.16 Total: 1.81 kcal Atomic # 7 Polarization: -53.05 SS G_CDS: -0.51 Total: -53.56 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: 0.09 Total: -10.26 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -33.02 -8.26 -41.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085449123.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.398 kcal (2) G-P(sol) polarization free energy of solvation -33.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds