Wall clock time and date at job start Sun Mar 29 2020 23:26:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46492 * 120.00169 * 2 1 4 4 C 1.52994 * 109.47464 * 84.36828 * 3 2 1 5 5 H 1.09008 * 112.77982 * 316.24158 * 4 3 2 6 6 C 1.53761 * 113.55470 * 87.09245 * 4 3 2 7 7 C 1.53496 * 83.25566 * 140.98980 * 6 4 3 8 8 N 1.47060 * 87.98852 * 333.76575 * 7 6 4 9 9 C 1.36940 * 136.05590 * 207.08746 * 8 7 6 10 10 H 1.08000 * 119.99815 * 172.13379 * 9 8 7 11 11 C 1.38803 * 120.00019 * 351.85199 * 9 8 7 12 12 N 1.31623 * 120.00230 * 0.27599 * 11 9 8 13 13 Si 1.86808 * 120.00051 * 180.27904 * 11 9 8 14 14 H 1.48498 * 109.46919 * 59.99770 * 13 11 9 15 15 H 1.48502 * 109.47276 * 180.02562 * 13 11 9 16 16 H 1.48505 * 109.46884 * 299.99904 * 13 11 9 17 17 C 1.34777 * 119.99732 * 179.97438 * 2 1 3 18 18 O 1.21285 * 119.99835 * 180.02562 * 17 2 1 19 19 C 1.50702 * 120.00169 * 0.02562 * 17 2 1 20 20 C 1.53783 * 113.61374 * 279.13678 * 19 17 2 21 21 C 1.53949 * 87.02360 * 220.04822 * 20 19 17 22 22 C 1.53777 * 113.61472 * 181.53065 * 19 17 2 23 23 H 1.09003 * 109.46576 * 89.97791 * 1 2 3 24 24 H 1.08998 * 109.47217 * 209.97161 * 1 2 3 25 25 H 1.08998 * 109.47183 * 329.97974 * 1 2 3 26 26 H 1.09000 * 109.47591 * 324.36555 * 3 2 1 27 27 H 1.09007 * 109.47071 * 204.37059 * 3 2 1 28 28 H 1.08996 * 114.39068 * 27.43096 * 6 4 3 29 29 H 1.09000 * 114.26529 * 254.54591 * 6 4 3 30 30 H 1.09006 * 113.46464 * 218.98143 * 7 6 4 31 31 H 1.09002 * 113.52099 * 88.55926 * 7 6 4 32 32 H 0.97001 * 119.99775 * 180.02562 * 12 11 9 33 33 H 1.08994 * 112.85089 * 50.33009 * 19 17 2 34 34 H 1.09000 * 113.61611 * 334.56933 * 20 19 17 35 35 H 1.09000 * 113.61669 * 105.46564 * 20 19 17 36 36 H 1.09003 * 113.54059 * 270.81589 * 21 20 19 37 37 H 1.08990 * 113.67268 * 139.93080 * 21 20 19 38 38 H 1.08995 * 113.61297 * 254.52539 * 22 19 17 39 39 H 1.09002 * 113.61774 * 25.43482 * 22 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.3300 1.7811 1.4354 5 1 1.4047 1.6876 2.0041 6 6 3.5606 1.2293 2.1738 7 6 3.6358 2.6546 2.7385 8 7 2.9412 3.1156 1.5269 9 6 2.8841 4.2779 0.8050 10 1 2.3696 4.2992 -0.1443 11 6 3.4825 5.4300 1.2962 12 7 4.1094 5.4041 2.4532 13 14 3.3979 7.0175 0.3151 14 1 1.9774 7.4050 0.1223 15 1 4.1095 8.0930 1.0514 16 1 4.0401 6.8160 -1.0087 17 6 2.1389 -1.1672 0.0005 18 8 3.3517 -1.1673 0.0010 19 6 1.3853 -2.4723 0.0005 20 6 0.8830 -2.8936 1.3916 21 6 1.2807 -4.3314 1.0114 22 6 2.2971 -3.7101 0.0388 23 1 -0.3632 0.0004 -1.0277 24 1 -0.3633 -0.8902 0.5134 25 1 -0.3633 0.8898 0.5141 26 1 1.6560 2.0010 -0.5987 27 1 3.1899 1.1152 -0.4241 28 1 4.3933 0.9618 1.5234 29 1 3.3319 0.4656 2.9171 30 1 4.6541 3.0337 2.8259 31 1 3.0552 2.7924 3.6507 32 1 4.5272 6.2094 2.7965 33 1 0.6187 -2.5185 -0.7729 34 1 1.4704 -2.4805 2.2116 35 1 -0.1899 -2.7579 1.5280 36 1 0.4846 -4.8865 0.5151 37 1 1.7413 -4.8883 1.8273 38 1 2.3641 -4.2326 -0.9154 39 1 3.2719 -3.5207 0.4882 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085449123.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:26:17 Heat of formation + Delta-G solvation = 23.401798 kcal Electronic energy + Delta-G solvation = -19163.673247 eV Core-core repulsion = 16301.240626 eV Total energy + Delta-G solvation = -2862.432620 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.42731 -39.92398 -38.24333 -36.42247 -34.28579 -30.41664 -29.91920 -27.86583 -26.72444 -26.48616 -25.41101 -23.79869 -21.18328 -20.93081 -19.73320 -18.76864 -18.11164 -17.37241 -16.96271 -16.51638 -15.99293 -15.82944 -15.35469 -15.19371 -14.29198 -13.88178 -13.83343 -13.62177 -13.46865 -13.44468 -13.06024 -12.94598 -12.78511 -12.64931 -12.55647 -12.29379 -12.01435 -11.85596 -11.69275 -11.36861 -11.24305 -11.17812 -10.86445 -10.55211 -9.57395 -8.91605 -7.92140 -5.26064 1.44319 1.48735 1.54590 1.69743 2.06951 2.48622 3.28435 3.41510 3.58974 3.70660 3.78805 3.84315 3.97715 4.11911 4.27336 4.33591 4.37542 4.43682 4.63904 4.72676 4.80423 4.84038 4.85705 4.90089 4.96154 4.98223 5.06296 5.09879 5.14763 5.18640 5.24989 5.44616 5.50501 5.59817 5.71401 5.90533 6.52583 6.88132 7.28326 7.58735 8.60843 9.26943 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.042067 B = 0.004895 C = 0.004696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.438353 B = 5718.266606 C = 5961.329369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.610 5.610 3 C 0.128 3.872 4 C 0.139 3.861 5 H 0.053 0.947 6 C -0.133 4.133 7 C 0.155 3.845 8 N -0.629 5.629 9 C -0.228 4.228 10 H 0.089 0.911 11 C -0.069 4.069 12 N -0.957 5.957 13 Si 0.981 3.019 14 H -0.272 1.272 15 H -0.296 1.296 16 H -0.277 1.277 17 C 0.510 3.490 18 O -0.585 6.585 19 C -0.132 4.132 20 C -0.121 4.121 21 C -0.127 4.127 22 C -0.128 4.128 23 H 0.073 0.927 24 H 0.099 0.901 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.058 0.942 28 H 0.065 0.935 29 H 0.074 0.926 30 H 0.027 0.973 31 H 0.021 0.979 32 H 0.248 0.752 33 H 0.139 0.861 34 H 0.066 0.934 35 H 0.101 0.899 36 H 0.107 0.893 37 H 0.073 0.927 38 H 0.079 0.921 39 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.753 -18.649 -4.375 22.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.342 5.342 3 C 0.003 3.997 4 C 0.032 3.968 5 H 0.071 0.929 6 C -0.171 4.171 7 C 0.029 3.971 8 N -0.355 5.355 9 C -0.355 4.355 10 H 0.107 0.893 11 C -0.262 4.262 12 N -0.605 5.605 13 Si 0.809 3.191 14 H -0.198 1.198 15 H -0.222 1.222 16 H -0.202 1.202 17 C 0.300 3.700 18 O -0.464 6.464 19 C -0.153 4.153 20 C -0.159 4.159 21 C -0.164 4.164 22 C -0.166 4.166 23 H 0.092 0.908 24 H 0.117 0.883 25 H 0.088 0.912 26 H 0.090 0.910 27 H 0.076 0.924 28 H 0.084 0.916 29 H 0.093 0.907 30 H 0.046 0.954 31 H 0.039 0.961 32 H 0.057 0.943 33 H 0.157 0.843 34 H 0.084 0.916 35 H 0.119 0.881 36 H 0.125 0.875 37 H 0.092 0.908 38 H 0.098 0.902 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -11.085 -18.284 -4.463 21.842 hybrid contribution 0.460 1.569 -0.101 1.639 sum -10.625 -16.714 -4.564 20.324 Atomic orbital electron populations 1.22073 0.77123 1.04507 1.03233 1.47962 1.08472 1.05039 1.72766 1.21380 0.96825 0.84588 0.96885 1.22530 0.95061 0.84399 0.94837 0.92942 1.23415 0.98355 0.95798 0.99527 1.21896 0.95818 0.90016 0.89390 1.45971 1.51824 1.09452 1.28278 1.19285 1.30202 0.85939 1.00107 0.89323 1.25736 1.01261 1.01020 0.98165 1.70048 1.41060 1.28276 1.21122 0.85119 0.77933 0.78570 0.77518 1.19776 1.22182 1.20242 1.21384 0.87713 0.86300 0.74605 1.90667 1.16299 1.87905 1.51578 1.22938 1.00254 0.89880 1.02207 1.22878 1.02529 0.96841 0.93621 1.22842 0.98888 0.95619 0.99042 1.22811 0.97851 0.94781 1.01141 0.90849 0.88299 0.91202 0.91027 0.92392 0.91622 0.90748 0.95419 0.96143 0.94300 0.84312 0.91571 0.88062 0.87475 0.90830 0.90234 0.91688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.32 10.15 127.77 1.30 2.62 16 2 N -0.61 -17.37 2.87 -846.76 -2.43 -19.80 16 3 C 0.13 4.79 5.42 86.38 0.47 5.26 16 4 C 0.14 5.88 4.31 41.88 0.18 6.06 16 5 H 0.05 2.13 8.14 -2.38 -0.02 2.11 16 6 C -0.13 -5.72 8.03 31.02 0.25 -5.47 16 7 C 0.15 8.01 7.22 83.18 0.60 8.61 16 8 N -0.63 -33.72 3.64 -713.42 -2.59 -36.32 16 9 C -0.23 -13.00 10.55 84.03 0.89 -12.11 16 10 H 0.09 4.74 7.83 -2.91 -0.02 4.71 16 11 C -0.07 -4.03 5.50 84.86 0.47 -3.57 16 12 N -0.96 -60.00 11.73 21.65 0.25 -59.74 16 13 Si 0.98 46.49 29.55 68.60 2.03 48.52 16 14 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 15 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 16 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 17 C 0.51 15.08 7.20 87.66 0.63 15.71 16 18 O -0.58 -22.99 15.41 -3.05 -0.05 -23.04 16 19 C -0.13 -2.47 2.80 -11.01 -0.03 -2.51 16 20 C -0.12 -1.83 6.85 31.18 0.21 -1.61 16 21 C -0.13 -1.62 8.09 31.18 0.25 -1.37 16 22 C -0.13 -2.42 7.40 31.12 0.23 -2.19 16 23 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 24 H 0.10 1.24 5.65 -2.39 -0.01 1.22 16 25 H 0.07 1.36 8.07 -2.39 -0.02 1.34 16 26 H 0.07 2.64 8.11 -2.39 -0.02 2.62 16 27 H 0.06 2.52 7.00 -2.38 -0.02 2.50 16 28 H 0.07 3.04 7.95 -2.39 -0.02 3.02 16 29 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 30 H 0.03 1.59 7.50 -2.38 -0.02 1.57 16 31 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.25 15.12 8.31 -92.71 -0.77 14.35 16 33 H 0.14 1.78 7.91 -2.39 -0.02 1.76 16 34 H 0.07 1.30 8.09 -2.39 -0.02 1.28 16 35 H 0.10 0.99 7.60 -2.39 -0.02 0.97 16 36 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.07 0.93 8.14 -2.39 -0.02 0.92 16 38 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.06 1.64 7.45 -2.39 -0.02 1.62 16 Total: -1.00 -74.44 316.55 3.66 -70.78 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: 1.01 Total: 10.18 kcal Atomic # 6 Polarization: 3.98 SS G_CDS: 5.45 Total: 9.43 kcal Atomic # 7 Polarization: -111.09 SS G_CDS: -4.77 Total: -115.86 kcal Atomic # 8 Polarization: -22.99 SS G_CDS: -0.05 Total: -23.04 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.52 kcal Total: -74.44 3.66 -70.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085449123.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.178 kcal (2) G-P(sol) polarization free energy of solvation -74.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds