Wall clock time and date at job start Sun Mar 29 2020 23:26:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46497 * 120.00358 * 2 1 4 4 C 1.52998 * 109.47367 * 95.13968 * 3 2 1 5 5 H 1.09002 * 112.77590 * 44.42797 * 4 3 2 6 6 C 1.53241 * 113.38403 * 273.72909 * 4 3 2 7 7 C 1.53495 * 83.42637 * 219.28711 * 6 4 3 8 8 N 1.47056 * 113.47159 * 175.21441 * 4 3 2 9 9 C 1.36942 * 136.05869 * 321.93363 * 8 4 3 10 10 H 1.08000 * 119.99574 * 354.78596 * 9 8 4 11 11 C 1.38812 * 120.00367 * 175.05436 * 9 8 4 12 12 N 1.31621 * 119.99714 * 359.72955 * 11 9 8 13 13 Si 1.86796 * 119.99982 * 179.72739 * 11 9 8 14 14 H 1.48503 * 109.47241 * 90.00215 * 13 11 9 15 15 H 1.48504 * 109.46952 * 210.00128 * 13 11 9 16 16 H 1.48502 * 109.47322 * 330.00132 * 13 11 9 17 17 C 1.34782 * 119.99632 * 180.02562 * 2 1 3 18 18 O 1.21280 * 119.99982 * 174.95685 * 17 2 1 19 19 C 1.50700 * 120.00195 * 354.95432 * 17 2 1 20 20 C 1.53781 * 113.61250 * 277.50102 * 19 17 2 21 21 C 1.53781 * 87.08077 * 220.01527 * 20 19 17 22 22 C 1.53779 * 113.61548 * 180.02562 * 19 17 2 23 23 H 1.08998 * 109.47052 * 89.99469 * 1 2 3 24 24 H 1.08995 * 109.47287 * 210.00308 * 1 2 3 25 25 H 1.09007 * 109.46810 * 330.00127 * 1 2 3 26 26 H 1.08995 * 109.46898 * 335.13779 * 3 2 1 27 27 H 1.09006 * 109.46963 * 215.13804 * 3 2 1 28 28 H 1.08997 * 114.32836 * 105.65458 * 6 4 3 29 29 H 1.08998 * 114.19464 * 332.91147 * 6 4 3 30 30 H 1.09000 * 113.47095 * 271.11005 * 7 6 4 31 31 H 1.09006 * 113.51641 * 140.68184 * 7 6 4 32 32 H 0.96995 * 119.99813 * 180.02562 * 12 11 9 33 33 H 1.09002 * 112.84639 * 48.80444 * 19 17 2 34 34 H 1.08997 * 113.62040 * 334.56286 * 20 19 17 35 35 H 1.08997 * 113.61485 * 105.47084 * 20 19 17 36 36 H 1.09002 * 113.61517 * 270.88613 * 21 20 19 37 37 H 1.08996 * 113.61793 * 139.98052 * 21 20 19 38 38 H 1.08999 * 113.61113 * 254.52766 * 22 19 17 39 39 H 1.08996 * 113.61408 * 25.42928 * 22 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.5645 1.6457 1.4367 5 1 2.9527 0.8027 2.0082 6 6 1.4590 2.4186 2.1639 7 6 2.6375 3.2218 2.7314 8 7 3.4010 2.8516 1.5303 9 6 4.4329 3.3941 0.8117 10 1 4.8603 2.8477 -0.0161 11 6 4.9332 4.6437 1.1508 12 7 4.4123 5.3095 2.1596 13 14 6.3458 5.3803 0.1754 14 1 5.8045 6.1784 -0.9539 15 1 7.1532 6.2584 1.0599 16 1 7.2027 4.2897 -0.3553 17 6 2.1388 -1.1673 -0.0005 18 8 3.3481 -1.1694 -0.0929 19 6 1.3897 -2.4699 0.1137 20 6 1.0309 -2.8494 1.5601 21 6 1.3870 -4.2976 1.1852 22 6 2.3013 -3.7082 0.0987 23 1 -0.3633 0.0001 -1.0276 24 1 -0.3633 -0.8899 0.5138 25 1 -0.3633 0.8901 0.5139 26 1 1.5718 2.0495 -0.4321 27 1 3.1071 1.1630 -0.5915 28 1 0.9171 1.8342 2.9074 29 1 0.8053 2.9896 1.5046 30 1 3.0454 2.8030 3.6513 31 1 2.4389 4.2910 2.8070 32 1 4.7616 6.1829 2.3963 33 1 0.5499 -2.5372 -0.5780 34 1 1.6981 -2.4143 2.3041 35 1 -0.0227 -2.7071 1.8003 36 1 0.5457 -4.8652 0.7876 37 1 1.9268 -4.8311 1.9676 38 1 2.2736 -4.2594 -0.8412 39 1 3.3158 -3.5077 0.4432 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085449124.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:26:21 Heat of formation + Delta-G solvation = 44.662938 kcal Electronic energy + Delta-G solvation = -19164.455044 eV Core-core repulsion = 16302.944376 eV Total energy + Delta-G solvation = -2861.510668 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.29499 -38.33019 -37.15179 -35.10305 -32.13106 -29.01780 -27.86938 -26.93087 -25.72867 -25.49158 -23.40022 -22.24884 -20.07918 -19.20532 -18.66246 -17.18879 -16.66924 -16.02441 -15.44137 -15.21513 -14.66560 -14.25292 -13.74022 -13.55962 -12.98997 -12.69349 -12.66515 -12.62609 -12.25956 -12.02277 -11.76431 -11.49343 -11.21232 -11.04285 -10.79569 -10.72397 -10.63923 -10.49577 -10.37756 -9.79345 -9.75274 -9.57706 -9.27447 -8.72886 -8.19869 -6.80774 -5.69735 -3.02968 2.85923 3.27182 3.43905 3.49077 3.51800 4.43102 4.50115 4.52172 4.60361 4.70944 4.98398 5.19054 5.29061 5.41214 5.42489 5.53483 5.54572 5.59540 5.67817 5.73455 5.75710 5.84781 5.87940 6.00420 6.05195 6.22273 6.32345 6.36247 6.51445 6.62583 6.74598 6.93597 7.29464 7.49343 7.64539 7.68470 8.06117 8.47861 9.11172 9.77437 10.71389 11.47038 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.031878 B = 0.005265 C = 0.004918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.124172 B = 5317.320923 C = 5691.811130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.611 5.611 3 C 0.115 3.885 4 C 0.136 3.864 5 H 0.042 0.958 6 C -0.166 4.166 7 C 0.148 3.852 8 N -0.600 5.600 9 C -0.213 4.213 10 H 0.080 0.920 11 C -0.008 4.008 12 N -0.921 5.921 13 Si 0.911 3.089 14 H -0.288 1.288 15 H -0.290 1.290 16 H -0.281 1.281 17 C 0.516 3.484 18 O -0.535 6.535 19 C -0.137 4.137 20 C -0.122 4.122 21 C -0.142 4.142 22 C -0.119 4.119 23 H 0.051 0.949 24 H 0.068 0.932 25 H 0.074 0.926 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.052 0.948 29 H 0.075 0.925 30 H 0.020 0.980 31 H 0.076 0.924 32 H 0.252 0.748 33 H 0.108 0.892 34 H 0.086 0.914 35 H 0.073 0.927 36 H 0.081 0.919 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.381 -15.236 -2.363 19.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.344 5.344 3 C -0.008 4.008 4 C 0.028 3.972 5 H 0.059 0.941 6 C -0.205 4.205 7 C 0.023 3.977 8 N -0.326 5.326 9 C -0.341 4.341 10 H 0.097 0.903 11 C -0.204 4.204 12 N -0.569 5.569 13 Si 0.741 3.259 14 H -0.215 1.215 15 H -0.217 1.217 16 H -0.206 1.206 17 C 0.304 3.696 18 O -0.412 6.412 19 C -0.159 4.159 20 C -0.160 4.160 21 C -0.179 4.179 22 C -0.157 4.157 23 H 0.069 0.931 24 H 0.087 0.913 25 H 0.093 0.907 26 H 0.096 0.904 27 H 0.097 0.903 28 H 0.071 0.929 29 H 0.094 0.906 30 H 0.038 0.962 31 H 0.094 0.906 32 H 0.062 0.938 33 H 0.126 0.874 34 H 0.105 0.895 35 H 0.092 0.908 36 H 0.099 0.901 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -11.458 -14.948 -2.503 18.999 hybrid contribution 0.726 0.512 -0.414 0.980 sum -10.732 -14.436 -2.917 18.223 Atomic orbital electron populations 1.21787 0.80095 1.03231 1.01295 1.47901 1.06733 1.06528 1.73245 1.21864 0.96872 0.82733 0.99312 1.22339 0.90335 0.91371 0.93145 0.94086 1.23671 0.96864 0.99880 1.00041 1.22088 0.86755 0.99693 0.89207 1.45619 1.38726 1.20469 1.27819 1.18939 1.07615 0.98514 1.08987 0.90269 1.24770 1.00072 0.96981 0.98603 1.69829 1.43705 1.13928 1.29389 0.86129 0.81801 0.78951 0.78991 1.21527 1.21674 1.20633 1.20490 0.87903 0.85038 0.76181 1.90710 1.14253 1.87150 1.49048 1.22781 1.00203 0.93091 0.99807 1.22816 1.01892 0.96489 0.94761 1.22825 0.99829 0.96114 0.99178 1.22797 0.99237 0.94360 0.99284 0.93058 0.91309 0.90712 0.90412 0.90309 0.92948 0.90623 0.96200 0.90559 0.93774 0.87389 0.89520 0.90824 0.90081 0.91081 0.91285 0.88670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.83 10.12 59.85 0.61 1.43 16 2 N -0.61 -9.30 2.88 -181.57 -0.52 -9.82 16 3 C 0.12 2.20 5.34 -4.04 -0.02 2.18 16 4 C 0.14 2.94 4.28 -72.55 -0.31 2.63 16 5 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 6 C -0.17 -3.18 7.98 -26.35 -0.21 -3.39 16 7 C 0.15 3.61 7.52 -8.52 -0.06 3.55 16 8 N -0.60 -16.00 3.65 -177.19 -0.65 -16.65 16 9 C -0.21 -6.21 10.55 -15.06 -0.16 -6.37 16 10 H 0.08 2.28 7.83 -52.49 -0.41 1.86 16 11 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 12 N -0.92 -28.00 11.43 55.49 0.63 -27.36 16 13 Si 0.91 22.90 29.55 -169.99 -5.02 17.88 16 14 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 15 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 16 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 17 C 0.52 8.32 7.16 -10.98 -0.08 8.25 16 18 O -0.54 -11.18 15.53 5.56 0.09 -11.10 16 19 C -0.14 -1.55 2.76 -90.96 -0.25 -1.80 16 20 C -0.12 -1.18 7.09 -25.92 -0.18 -1.37 16 21 C -0.14 -1.21 8.08 -25.94 -0.21 -1.42 16 22 C -0.12 -1.30 7.40 -25.94 -0.19 -1.50 16 23 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.07 0.57 5.92 -51.93 -0.31 0.26 16 25 H 0.07 0.76 8.05 -51.93 -0.42 0.34 16 26 H 0.08 1.41 7.76 -51.93 -0.40 1.00 16 27 H 0.08 1.74 7.51 -51.93 -0.39 1.35 16 28 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.08 1.38 7.93 -51.93 -0.41 0.97 16 30 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.08 2.04 6.93 -51.93 -0.36 1.68 16 32 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 33 H 0.11 0.97 7.67 -51.93 -0.40 0.57 16 34 H 0.09 1.00 8.09 -51.93 -0.42 0.58 16 35 H 0.07 0.57 7.84 -51.93 -0.41 0.16 16 36 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.09 1.27 7.43 -51.93 -0.39 0.88 16 LS Contribution 316.40 15.07 4.77 4.77 Total: -1.00 -34.00 316.40 -8.28 -42.28 By element: Atomic # 1 Polarization: 4.55 SS G_CDS: -6.41 Total: -1.86 kcal Atomic # 6 Polarization: 3.03 SS G_CDS: -1.17 Total: 1.86 kcal Atomic # 7 Polarization: -53.30 SS G_CDS: -0.54 Total: -53.83 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: 0.09 Total: -11.10 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -5.02 Total: 17.88 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -34.00 -8.28 -42.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085449124.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.942 kcal (2) G-P(sol) polarization free energy of solvation -33.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds