Wall clock time and date at job start Sun Mar 29 2020 23:26:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46497 * 120.00358 * 2 1 4 4 C 1.52998 * 109.47367 * 95.13968 * 3 2 1 5 5 H 1.09002 * 112.77590 * 44.42797 * 4 3 2 6 6 C 1.53241 * 113.38403 * 273.72909 * 4 3 2 7 7 C 1.53495 * 83.42637 * 219.28711 * 6 4 3 8 8 N 1.47056 * 113.47159 * 175.21441 * 4 3 2 9 9 C 1.36942 * 136.05869 * 321.93363 * 8 4 3 10 10 H 1.08000 * 119.99574 * 354.78596 * 9 8 4 11 11 C 1.38812 * 120.00367 * 175.05436 * 9 8 4 12 12 N 1.31621 * 119.99714 * 359.72955 * 11 9 8 13 13 Si 1.86796 * 119.99982 * 179.72739 * 11 9 8 14 14 H 1.48503 * 109.47241 * 90.00215 * 13 11 9 15 15 H 1.48504 * 109.46952 * 210.00128 * 13 11 9 16 16 H 1.48502 * 109.47322 * 330.00132 * 13 11 9 17 17 C 1.34782 * 119.99632 * 180.02562 * 2 1 3 18 18 O 1.21280 * 119.99982 * 174.95685 * 17 2 1 19 19 C 1.50700 * 120.00195 * 354.95432 * 17 2 1 20 20 C 1.53781 * 113.61250 * 277.50102 * 19 17 2 21 21 C 1.53781 * 87.08077 * 220.01527 * 20 19 17 22 22 C 1.53779 * 113.61548 * 180.02562 * 19 17 2 23 23 H 1.08998 * 109.47052 * 89.99469 * 1 2 3 24 24 H 1.08995 * 109.47287 * 210.00308 * 1 2 3 25 25 H 1.09007 * 109.46810 * 330.00127 * 1 2 3 26 26 H 1.08995 * 109.46898 * 335.13779 * 3 2 1 27 27 H 1.09006 * 109.46963 * 215.13804 * 3 2 1 28 28 H 1.08997 * 114.32836 * 105.65458 * 6 4 3 29 29 H 1.08998 * 114.19464 * 332.91147 * 6 4 3 30 30 H 1.09000 * 113.47095 * 271.11005 * 7 6 4 31 31 H 1.09006 * 113.51641 * 140.68184 * 7 6 4 32 32 H 0.96995 * 119.99813 * 180.02562 * 12 11 9 33 33 H 1.09002 * 112.84639 * 48.80444 * 19 17 2 34 34 H 1.08997 * 113.62040 * 334.56286 * 20 19 17 35 35 H 1.08997 * 113.61485 * 105.47084 * 20 19 17 36 36 H 1.09002 * 113.61517 * 270.88613 * 21 20 19 37 37 H 1.08996 * 113.61793 * 139.98052 * 21 20 19 38 38 H 1.08999 * 113.61113 * 254.52766 * 22 19 17 39 39 H 1.08996 * 113.61408 * 25.42928 * 22 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.5645 1.6457 1.4367 5 1 2.9527 0.8027 2.0082 6 6 1.4590 2.4186 2.1639 7 6 2.6375 3.2218 2.7314 8 7 3.4010 2.8516 1.5303 9 6 4.4329 3.3941 0.8117 10 1 4.8603 2.8477 -0.0161 11 6 4.9332 4.6437 1.1508 12 7 4.4123 5.3095 2.1596 13 14 6.3458 5.3803 0.1754 14 1 5.8045 6.1784 -0.9539 15 1 7.1532 6.2584 1.0599 16 1 7.2027 4.2897 -0.3553 17 6 2.1388 -1.1673 -0.0005 18 8 3.3481 -1.1694 -0.0929 19 6 1.3897 -2.4699 0.1137 20 6 1.0309 -2.8494 1.5601 21 6 1.3870 -4.2976 1.1852 22 6 2.3013 -3.7082 0.0987 23 1 -0.3633 0.0001 -1.0276 24 1 -0.3633 -0.8899 0.5138 25 1 -0.3633 0.8901 0.5139 26 1 1.5718 2.0495 -0.4321 27 1 3.1071 1.1630 -0.5915 28 1 0.9171 1.8342 2.9074 29 1 0.8053 2.9896 1.5046 30 1 3.0454 2.8030 3.6513 31 1 2.4389 4.2910 2.8070 32 1 4.7616 6.1829 2.3963 33 1 0.5499 -2.5372 -0.5780 34 1 1.6981 -2.4143 2.3041 35 1 -0.0227 -2.7071 1.8003 36 1 0.5457 -4.8652 0.7876 37 1 1.9268 -4.8311 1.9676 38 1 2.2736 -4.2594 -0.8412 39 1 3.3158 -3.5077 0.4432 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085449124.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:26:20 Heat of formation + Delta-G solvation = 22.431361 kcal Electronic energy + Delta-G solvation = -19165.419078 eV Core-core repulsion = 16302.944376 eV Total energy + Delta-G solvation = -2862.474702 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.46066 -39.96028 -38.30003 -36.43986 -34.30104 -30.43386 -29.93378 -27.89426 -26.63956 -26.52113 -25.44773 -23.82200 -21.19168 -20.95192 -19.74390 -18.77365 -18.19688 -17.37466 -16.98058 -16.43905 -16.12479 -15.90474 -15.30419 -15.06517 -14.44283 -13.99470 -13.75791 -13.61132 -13.52290 -13.41923 -13.07856 -12.94232 -12.91398 -12.65549 -12.46394 -12.25123 -12.07729 -11.81985 -11.65428 -11.39842 -11.30862 -11.23625 -10.87970 -10.59759 -9.56835 -8.93403 -7.92908 -5.27678 1.41033 1.43501 1.52332 1.64406 2.06510 2.46098 3.26671 3.45778 3.54259 3.66073 3.73854 3.84250 3.94762 4.11098 4.24373 4.31848 4.41944 4.52175 4.68282 4.71665 4.82171 4.83262 4.88595 4.91230 4.95389 4.99395 5.06647 5.08555 5.12005 5.21337 5.22729 5.46219 5.52741 5.57855 5.74863 5.93911 6.50685 6.89548 7.25154 7.57217 8.58678 9.23440 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.031878 B = 0.005265 C = 0.004918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.124172 B = 5317.320923 C = 5691.811130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.608 5.608 3 C 0.130 3.870 4 C 0.137 3.863 5 H 0.021 0.979 6 C -0.124 4.124 7 C 0.138 3.862 8 N -0.632 5.632 9 C -0.228 4.228 10 H 0.070 0.930 11 C -0.062 4.062 12 N -0.950 5.950 13 Si 0.977 3.023 14 H -0.278 1.278 15 H -0.290 1.290 16 H -0.278 1.278 17 C 0.505 3.495 18 O -0.598 6.598 19 C -0.130 4.130 20 C -0.119 4.119 21 C -0.125 4.125 22 C -0.132 4.132 23 H 0.072 0.928 24 H 0.098 0.902 25 H 0.082 0.918 26 H 0.091 0.909 27 H 0.036 0.964 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.009 0.991 31 H 0.049 0.951 32 H 0.250 0.750 33 H 0.145 0.855 34 H 0.059 0.941 35 H 0.106 0.894 36 H 0.112 0.888 37 H 0.071 0.929 38 H 0.081 0.919 39 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.345 -16.690 -2.930 22.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.340 5.340 3 C 0.005 3.995 4 C 0.029 3.971 5 H 0.038 0.962 6 C -0.162 4.162 7 C 0.012 3.988 8 N -0.358 5.358 9 C -0.356 4.356 10 H 0.088 0.912 11 C -0.255 4.255 12 N -0.598 5.598 13 Si 0.804 3.196 14 H -0.204 1.204 15 H -0.216 1.216 16 H -0.203 1.203 17 C 0.295 3.705 18 O -0.479 6.479 19 C -0.151 4.151 20 C -0.157 4.157 21 C -0.162 4.162 22 C -0.170 4.170 23 H 0.091 0.909 24 H 0.117 0.883 25 H 0.101 0.899 26 H 0.109 0.891 27 H 0.055 0.945 28 H 0.111 0.889 29 H 0.111 0.889 30 H 0.027 0.973 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.163 0.837 34 H 0.078 0.922 35 H 0.125 0.875 36 H 0.130 0.870 37 H 0.090 0.910 38 H 0.100 0.900 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -14.490 -16.431 -3.074 22.122 hybrid contribution 1.655 0.908 -0.218 1.900 sum -12.835 -15.523 -3.292 20.409 Atomic orbital electron populations 1.22159 0.76417 1.05150 1.03341 1.47995 1.08821 1.04761 1.72422 1.21410 0.96095 0.85186 0.96772 1.22391 0.90297 0.89537 0.94853 0.96178 1.23425 0.95043 0.97964 0.99780 1.22147 0.89212 0.98848 0.88570 1.46027 1.38804 1.22437 1.28531 1.19168 1.08486 0.98858 1.09083 0.91199 1.25577 1.02674 0.97410 0.99820 1.70002 1.44978 1.14036 1.30804 0.85115 0.78724 0.77983 0.77730 1.20438 1.21581 1.20304 1.21525 0.87531 0.86753 0.74659 1.90683 1.17283 1.88119 1.51828 1.22958 1.00588 0.89643 1.01906 1.22819 1.03175 0.96901 0.92766 1.22813 0.99848 0.95644 0.97941 1.22822 0.97992 0.95189 1.00955 0.90946 0.88311 0.89928 0.89084 0.94534 0.88894 0.88876 0.97346 0.93256 0.94129 0.83705 0.92195 0.87549 0.86994 0.91014 0.90021 0.92333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.17 10.12 127.77 1.29 2.46 16 2 N -0.61 -17.61 2.88 -846.76 -2.44 -20.05 16 3 C 0.13 4.97 5.34 86.38 0.46 5.44 16 4 C 0.14 5.94 4.28 41.70 0.18 6.11 16 5 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 6 C -0.12 -4.51 7.98 30.84 0.25 -4.27 16 7 C 0.14 6.83 7.52 83.17 0.63 7.45 16 8 N -0.63 -34.63 3.65 -714.50 -2.61 -37.23 16 9 C -0.23 -13.72 10.55 84.03 0.89 -12.84 16 10 H 0.07 4.21 7.83 -2.91 -0.02 4.19 16 11 C -0.06 -3.69 5.50 84.86 0.47 -3.22 16 12 N -0.95 -59.18 11.43 21.65 0.25 -58.93 16 13 Si 0.98 48.15 29.55 68.60 2.03 50.17 16 14 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 15 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 16 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 17 C 0.51 16.11 7.16 87.66 0.63 16.74 16 18 O -0.60 -26.34 15.53 -3.03 -0.05 -26.39 16 19 C -0.13 -2.60 2.76 -11.01 -0.03 -2.63 16 20 C -0.12 -1.93 7.09 31.12 0.22 -1.71 16 21 C -0.13 -1.74 8.08 31.11 0.25 -1.48 16 22 C -0.13 -2.73 7.40 31.11 0.23 -2.50 16 23 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 24 H 0.10 1.07 5.92 -2.39 -0.01 1.06 16 25 H 0.08 1.28 8.05 -2.38 -0.02 1.26 16 26 H 0.09 3.20 7.76 -2.39 -0.02 3.18 16 27 H 0.04 1.70 7.51 -2.38 -0.02 1.68 16 28 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 29 H 0.09 3.11 7.93 -2.39 -0.02 3.09 16 30 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.05 2.69 6.93 -2.38 -0.02 2.68 16 32 H 0.25 15.01 8.31 -92.71 -0.77 14.23 16 33 H 0.15 1.86 7.67 -2.39 -0.02 1.84 16 34 H 0.06 1.31 8.09 -2.39 -0.02 1.29 16 35 H 0.11 1.06 7.84 -2.39 -0.02 1.05 16 36 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.06 1.65 7.43 -2.39 -0.02 1.63 16 Total: -1.00 -79.60 316.40 3.65 -75.96 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: 1.01 Total: 6.91 kcal Atomic # 6 Polarization: 4.10 SS G_CDS: 5.46 Total: 9.56 kcal Atomic # 7 Polarization: -111.41 SS G_CDS: -4.80 Total: -116.21 kcal Atomic # 8 Polarization: -26.34 SS G_CDS: -0.05 Total: -26.39 kcal Atomic # 14 Polarization: 48.15 SS G_CDS: 2.03 Total: 50.17 kcal Total: -79.60 3.65 -75.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085449124.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.389 kcal (2) G-P(sol) polarization free energy of solvation -79.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds