Wall clock time and date at job start Sun Mar 29 2020 23:02:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21278 * 119.99826 * 2 1 4 4 N 1.34770 * 120.00142 * 179.97438 * 2 1 3 5 5 C 1.46504 * 120.00385 * 179.97438 * 4 2 1 6 6 C 1.52997 * 109.47195 * 179.97438 * 5 4 2 7 7 C 1.53348 * 111.23252 * 297.63417 * 6 5 4 8 8 C 1.55543 * 105.83596 * 241.97236 * 7 6 5 9 9 C 1.54678 * 104.35054 * 334.35919 * 8 7 6 10 10 C 1.54576 * 111.31545 * 177.45538 * 6 5 4 11 11 H 1.08999 * 111.92374 * 18.71070 * 10 6 5 12 12 N 1.46900 * 107.36861 * 255.62424 * 10 6 5 13 13 C 1.36938 * 125.24987 * 181.68100 * 12 10 6 14 14 H 1.07999 * 119.99728 * 359.97438 * 13 12 10 15 15 C 1.38814 * 119.99791 * 180.02562 * 13 12 10 16 16 N 1.31621 * 119.99907 * 359.97438 * 15 13 12 17 17 Si 1.86793 * 119.99840 * 180.02562 * 15 13 12 18 18 H 1.48493 * 109.47208 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47391 * 120.00092 * 17 15 13 20 20 H 1.48509 * 109.46837 * 239.99503 * 17 15 13 21 21 C 1.46740 * 109.49784 * 1.65650 * 12 10 6 22 22 C 1.53865 * 111.25505 * 61.02093 * 6 5 4 23 23 H 1.09002 * 109.47152 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46980 * 59.99928 * 1 2 3 25 25 H 1.09004 * 109.47113 * 299.99909 * 1 2 3 26 26 H 0.97005 * 120.00296 * 0.02562 * 4 2 1 27 27 H 1.08999 * 109.46908 * 300.00273 * 5 4 2 28 28 H 1.08998 * 109.46775 * 60.00310 * 5 4 2 29 29 H 1.09005 * 110.05418 * 1.97237 * 7 6 5 30 30 H 1.08993 * 110.06169 * 123.47575 * 7 6 5 31 31 H 1.09001 * 110.53906 * 215.54325 * 8 7 6 32 32 H 1.09003 * 110.23468 * 93.01652 * 8 7 6 33 33 H 1.09001 * 110.60944 * 278.64861 * 9 8 7 34 34 H 1.08999 * 110.61235 * 155.66993 * 9 8 7 35 35 H 0.97002 * 119.99998 * 180.02562 * 16 15 13 36 36 H 1.08998 * 110.04128 * 221.97371 * 21 12 10 37 37 H 1.08997 * 110.04350 * 100.50909 * 21 12 10 38 38 H 1.09008 * 110.57286 * 212.51043 * 22 6 5 39 39 H 1.08998 * 110.57596 * 335.23644 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.6459 -1.1672 0.0000 6 6 4.1559 -2.6097 0.0014 7 6 3.7164 -3.3528 1.2687 8 6 5.0280 -3.7466 2.0062 9 6 6.0907 -3.8215 0.8848 10 6 5.6995 -2.6600 -0.0631 11 1 6.1501 -1.7110 0.2274 12 7 6.0689 -3.0438 -1.4321 13 6 7.3487 -3.2287 -1.8830 14 1 8.1830 -3.0912 -1.2111 15 6 7.5735 -3.5917 -3.2038 16 7 6.5566 -3.7587 -4.0226 17 14 9.3191 -3.8446 -3.8187 18 1 10.2752 -3.5977 -2.7096 19 1 9.4752 -5.2386 -4.3062 20 1 9.5947 -2.8980 -4.9293 21 6 4.8550 -3.1990 -2.2418 22 6 3.6863 -3.3685 -1.2520 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 1.6959 -2.0073 0.0005 27 1 4.0089 -0.6539 -0.8905 28 1 4.0096 -0.6528 0.8895 29 1 3.1000 -2.7020 1.8889 30 1 3.1606 -4.2515 1.0014 31 1 4.9171 -4.7158 2.4925 32 1 5.2952 -2.9812 2.7348 33 1 6.0328 -4.7776 0.3645 34 1 7.0897 -3.6649 1.2917 35 1 6.7137 -4.0128 -4.9455 36 1 4.9390 -4.0818 -2.8754 37 1 4.6991 -2.3116 -2.8552 38 1 3.5271 -4.4226 -1.0244 39 1 2.7755 -2.9222 -1.6513 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094340228.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:02:25 Heat of formation + Delta-G solvation = -24.154979 kcal Electronic energy + Delta-G solvation = -19594.003967 eV Core-core repulsion = 16729.509130 eV Total energy + Delta-G solvation = -2864.494837 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.98428 -38.76374 -34.70722 -33.92998 -31.77806 -30.71087 -29.62777 -27.40565 -26.68082 -24.17825 -23.82061 -20.82987 -20.05921 -19.75704 -18.24992 -17.09363 -16.58726 -15.68288 -15.39906 -14.87818 -14.69592 -14.22505 -13.56325 -13.40847 -13.18829 -12.97249 -12.68149 -12.56361 -12.09812 -11.82864 -11.45041 -11.26727 -11.12380 -10.81139 -10.73495 -10.65570 -10.25644 -10.12233 -10.03681 -9.84077 -9.69126 -9.58328 -9.44843 -8.84305 -8.58741 -6.80236 -5.64819 -3.03524 2.75948 3.39675 3.40964 3.46960 3.48980 4.50667 4.83239 4.95910 5.00190 5.03817 5.13251 5.32971 5.52272 5.55632 5.57832 5.71709 5.76955 5.84529 5.89284 6.04385 6.09321 6.10447 6.20941 6.31298 6.40447 6.45031 6.48935 6.65098 6.70611 6.78204 6.87356 7.13063 7.56927 7.65400 7.69888 7.88049 8.35098 8.36784 9.26028 9.87106 10.50482 11.41008 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.026334 B = 0.006279 C = 0.005577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.016170 B = 4458.439766 C = 5019.413795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.505 3.495 3 O -0.553 6.553 4 N -0.722 5.722 5 C 0.138 3.862 6 C -0.082 4.082 7 C -0.111 4.111 8 C -0.122 4.122 9 C -0.130 4.130 10 C 0.172 3.828 11 H 0.047 0.953 12 N -0.596 5.596 13 C -0.219 4.219 14 H 0.077 0.923 15 C -0.011 4.011 16 N -0.923 5.923 17 Si 0.911 3.089 18 H -0.280 1.280 19 H -0.291 1.291 20 H -0.291 1.291 21 C 0.163 3.837 22 C -0.133 4.133 23 H 0.074 0.926 24 H 0.092 0.908 25 H 0.091 0.909 26 H 0.399 0.601 27 H 0.071 0.929 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.072 0.928 34 H 0.054 0.946 35 H 0.250 0.750 36 H 0.093 0.907 37 H 0.012 0.988 38 H 0.060 0.940 39 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.219 0.366 9.839 14.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.292 3.708 3 O -0.431 6.431 4 N -0.374 5.374 5 C 0.015 3.985 6 C -0.083 4.083 7 C -0.148 4.148 8 C -0.161 4.161 9 C -0.170 4.170 10 C 0.064 3.936 11 H 0.065 0.935 12 N -0.320 5.320 13 C -0.347 4.347 14 H 0.095 0.905 15 C -0.207 4.207 16 N -0.571 5.571 17 Si 0.742 3.258 18 H -0.205 1.205 19 H -0.218 1.218 20 H -0.218 1.218 21 C 0.038 3.962 22 C -0.172 4.172 23 H 0.093 0.907 24 H 0.111 0.889 25 H 0.109 0.891 26 H 0.234 0.766 27 H 0.090 0.910 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.090 0.910 34 H 0.073 0.927 35 H 0.061 0.939 36 H 0.110 0.890 37 H 0.030 0.970 38 H 0.079 0.921 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.661 1.072 9.615 14.396 hybrid contribution 0.669 -0.532 -0.429 0.956 sum -9.991 0.540 9.186 13.583 Atomic orbital electron populations 1.21839 0.92183 1.03980 1.04987 1.20760 0.90443 0.83688 0.75956 1.90721 1.70811 1.31508 1.50102 1.46207 1.08066 1.08438 1.74718 1.21342 0.78501 0.96477 1.02161 1.21872 0.97304 0.93220 0.95905 1.22375 0.97514 0.99270 0.95685 1.22526 0.95496 1.00128 0.97905 1.22989 0.97058 1.01085 0.95869 1.21531 0.89820 0.94987 0.87259 0.93546 1.44345 1.02669 1.80103 1.04864 1.19092 0.82545 1.38987 0.94099 0.90474 1.24775 0.97461 1.02225 0.96197 1.69898 1.27876 1.54323 1.05034 0.86042 0.83805 0.77363 0.78574 1.20547 1.21843 1.21844 1.21432 0.82021 1.01521 0.91239 1.22795 0.99733 0.98647 0.95977 0.90725 0.88935 0.89069 0.76591 0.91031 0.91822 0.92247 0.91818 0.92524 0.92422 0.90971 0.92741 0.93906 0.88955 0.96998 0.92119 0.92546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.47 10.39 36.01 0.37 -1.10 16 2 C 0.50 6.98 7.94 -10.99 -0.09 6.89 16 3 O -0.55 -10.35 17.10 5.56 0.10 -10.26 16 4 N -0.72 -9.44 4.65 -60.30 -0.28 -9.72 16 5 C 0.14 2.23 4.43 -4.04 -0.02 2.22 16 6 C -0.08 -1.34 0.53 -153.05 -0.08 -1.42 16 7 C -0.11 -1.48 5.75 -25.20 -0.14 -1.63 16 8 C -0.12 -1.72 6.88 -24.50 -0.17 -1.89 16 9 C -0.13 -2.33 6.23 -24.82 -0.15 -2.49 16 10 C 0.17 3.45 3.60 -65.86 -0.24 3.21 16 11 H 0.05 0.97 7.93 -51.93 -0.41 0.56 16 12 N -0.60 -14.73 2.99 -162.42 -0.49 -15.21 16 13 C -0.22 -5.99 9.96 -15.06 -0.15 -6.14 16 14 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 15 C -0.01 -0.31 5.48 -17.43 -0.10 -0.41 16 16 N -0.92 -26.85 10.14 55.49 0.56 -26.29 16 17 Si 0.91 22.13 29.55 -169.99 -5.02 17.11 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 20 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 21 C 0.16 3.87 5.65 -3.35 -0.02 3.85 16 22 C -0.13 -2.36 5.77 -25.72 -0.15 -2.51 16 23 H 0.07 0.46 7.91 -51.93 -0.41 0.05 16 24 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.40 4.17 7.39 -40.82 -0.30 3.86 16 27 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 28 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.06 0.71 7.51 -51.93 -0.39 0.32 16 30 H 0.06 0.80 7.28 -51.93 -0.38 0.43 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.07 1.44 8.06 -51.93 -0.42 1.02 16 34 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 36 H 0.09 2.48 6.16 -51.93 -0.32 2.16 16 37 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 38 H 0.06 1.04 7.42 -51.92 -0.39 0.66 16 39 H 0.06 0.89 7.02 -51.93 -0.36 0.53 16 LS Contribution 306.31 15.07 4.62 4.62 Total: -1.00 -31.85 306.31 -7.75 -39.60 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -6.31 Total: 1.55 kcal Atomic # 6 Polarization: -0.47 SS G_CDS: -0.93 Total: -1.40 kcal Atomic # 7 Polarization: -51.02 SS G_CDS: -0.20 Total: -51.22 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: 0.10 Total: -10.26 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.85 -7.75 -39.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094340228.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.450 kcal (2) G-P(sol) polarization free energy of solvation -31.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds