Wall clock time and date at job start Sun Mar 29 2020 23:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21279 * 120.00267 * 2 1 4 4 N 1.34781 * 119.99929 * 180.02562 * 2 1 3 5 5 C 1.48115 * 127.84120 * 359.96873 * 4 2 1 6 6 C 1.54327 * 104.69259 * 219.77333 * 5 4 2 7 7 H 1.08997 * 111.85036 * 214.55037 * 6 5 4 8 8 C 1.54154 * 108.86718 * 89.54194 * 6 5 4 9 9 C 1.54837 * 104.33720 * 271.20306 * 8 6 5 10 10 C 1.57142 * 102.91154 * 321.71185 * 9 8 6 11 11 C 1.54164 * 103.23439 * 38.19464 * 10 9 8 12 12 C 1.52996 * 111.81979 * 213.14911 * 11 10 9 13 13 N 1.46498 * 109.47059 * 298.61215 * 12 11 10 14 14 C 1.36943 * 119.99752 * 179.72430 * 13 12 11 15 15 H 1.08002 * 119.99793 * 0.27665 * 14 13 12 16 16 C 1.38811 * 120.00012 * 180.27737 * 14 13 12 17 17 N 1.31624 * 119.99698 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00072 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47213 * 60.00246 * 18 16 14 20 20 H 1.48502 * 109.47317 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47081 * 299.99875 * 18 16 14 22 22 C 1.48113 * 127.84280 * 180.02562 * 4 2 1 23 23 H 1.08998 * 109.47538 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.47264 * 299.99750 * 1 2 3 25 25 H 1.09000 * 109.47221 * 59.99291 * 1 2 3 26 26 H 1.09001 * 110.39613 * 338.57770 * 5 4 2 27 27 H 1.08995 * 110.39289 * 100.85012 * 5 4 2 28 28 H 1.08998 * 110.46369 * 29.92122 * 8 6 5 29 29 H 1.09003 * 110.45961 * 152.49485 * 8 6 5 30 30 H 1.09000 * 110.75414 * 80.14217 * 9 8 6 31 31 H 1.08996 * 110.76168 * 203.32826 * 9 8 6 32 32 H 1.09000 * 111.52047 * 279.58599 * 10 9 8 33 33 H 1.09007 * 110.44597 * 156.28507 * 10 9 8 34 34 H 1.09004 * 109.47066 * 178.61483 * 12 11 10 35 35 H 1.08994 * 109.46974 * 58.61630 * 12 11 10 36 36 H 0.97001 * 120.00384 * 0.02562 * 13 12 11 37 37 H 0.96999 * 119.99739 * 180.02562 * 17 16 14 38 38 H 1.09007 * 110.39223 * 21.44418 * 22 4 2 39 39 H 1.09001 * 110.39375 * 259.05572 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.6222 -2.5390 -0.0005 6 6 2.5376 -3.3344 0.9540 7 1 2.6635 -4.3671 0.6286 8 6 1.9759 -3.2300 2.3857 9 6 2.6377 -1.9558 2.9652 10 6 4.0952 -2.0205 2.3812 11 6 3.8796 -2.5602 0.9533 12 6 5.0456 -3.4385 0.4953 13 7 6.2768 -2.6448 0.4764 14 6 7.4595 -3.2247 0.1018 15 1 7.4837 -4.2659 -0.1839 16 6 8.6271 -2.4741 0.0894 17 7 8.5976 -1.2053 0.4382 18 14 10.2403 -3.2648 -0.4222 19 1 10.1243 -3.7707 -1.8135 20 1 11.3297 -2.2583 -0.3502 21 1 10.5495 -4.3943 0.4911 22 6 3.6481 -1.3694 -0.0001 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 0.5982 -2.5321 0.3731 27 1 1.6566 -2.9631 -1.0040 28 1 0.8918 -3.1195 2.3627 29 1 2.2582 -4.1055 2.9706 30 1 2.1215 -1.0606 2.6184 31 1 2.6565 -1.9914 4.0544 32 1 4.7258 -2.7001 2.9544 33 1 4.5372 -1.0245 2.3493 34 1 4.8428 -3.8185 -0.5060 35 1 5.1629 -4.2749 1.1844 36 1 6.2550 -1.7097 0.7334 37 1 9.4134 -0.6807 0.4291 38 1 4.1540 -0.4793 0.3743 39 1 3.9983 -1.6127 -1.0032 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112227545.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:01:11 Heat of formation + Delta-G solvation = -27.372382 kcal Electronic energy + Delta-G solvation = -19588.134346 eV Core-core repulsion = 16723.499992 eV Total energy + Delta-G solvation = -2864.634354 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.60530 -38.33410 -34.74754 -34.00938 -31.77042 -30.35320 -29.86711 -28.57950 -25.36798 -25.19550 -23.62456 -22.08846 -20.17102 -19.27752 -18.58420 -17.10176 -16.71060 -16.21000 -15.21877 -14.83455 -14.43746 -14.30927 -13.55888 -13.41591 -13.20331 -13.13577 -12.95150 -12.67035 -12.52544 -12.09127 -11.98732 -11.45324 -11.15536 -10.82892 -10.74668 -10.71151 -10.57231 -10.52365 -10.33355 -10.22141 -9.93834 -9.69810 -9.61832 -8.85025 -8.47591 -6.89530 -5.73051 -3.02204 2.75777 3.12565 3.46008 3.50242 3.51682 4.39878 4.55151 4.63055 4.69958 4.85979 5.06226 5.27194 5.29858 5.34018 5.36792 5.43220 5.58373 5.61824 5.65147 5.72672 5.79021 5.82028 5.93525 5.98742 6.08042 6.18758 6.24428 6.29467 6.38029 6.54727 6.56437 6.66517 6.77893 6.81930 7.71606 7.73651 8.29821 8.45345 9.56568 10.14231 10.48849 11.49544 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.029092 B = 0.005811 C = 0.005365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.248620 B = 4817.168442 C = 5218.062911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.527 3.473 3 O -0.549 6.549 4 N -0.618 5.618 5 C 0.105 3.895 6 C -0.099 4.099 7 H 0.095 0.905 8 C -0.113 4.113 9 C -0.123 4.123 10 C -0.103 4.103 11 C -0.075 4.075 12 C 0.173 3.827 13 N -0.730 5.730 14 C -0.242 4.242 15 H 0.069 0.931 16 C -0.012 4.012 17 N -0.932 5.932 18 Si 0.907 3.093 19 H -0.286 1.286 20 H -0.291 1.291 21 H -0.286 1.286 22 C 0.119 3.881 23 H 0.075 0.925 24 H 0.091 0.909 25 H 0.091 0.909 26 H 0.078 0.922 27 H 0.071 0.929 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.020 0.980 35 H 0.023 0.977 36 H 0.385 0.615 37 H 0.256 0.744 38 H 0.085 0.915 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.673 -4.054 1.947 19.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.316 3.684 3 O -0.427 6.427 4 N -0.352 5.352 5 C -0.018 4.018 6 C -0.118 4.118 7 H 0.113 0.887 8 C -0.150 4.150 9 C -0.161 4.161 10 C -0.141 4.141 11 C -0.077 4.077 12 C 0.045 3.955 13 N -0.375 5.375 14 C -0.373 4.373 15 H 0.087 0.913 16 C -0.208 4.208 17 N -0.580 5.580 18 Si 0.738 3.262 19 H -0.213 1.213 20 H -0.217 1.217 21 H -0.213 1.213 22 C -0.003 4.003 23 H 0.094 0.906 24 H 0.110 0.890 25 H 0.110 0.890 26 H 0.096 0.904 27 H 0.089 0.911 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.092 0.908 33 H 0.086 0.914 34 H 0.037 0.963 35 H 0.041 0.959 36 H 0.219 0.781 37 H 0.066 0.934 38 H 0.103 0.897 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -18.289 -3.478 1.878 18.711 hybrid contribution 0.963 -0.185 -0.259 1.014 sum -17.326 -3.663 1.619 17.783 Atomic orbital electron populations 1.21870 0.92050 1.04029 1.04934 1.20344 0.89997 0.82075 0.75989 1.90744 1.70636 1.30587 1.50756 1.49088 1.08521 1.05290 1.72336 1.22540 0.97533 0.82001 0.99756 1.22703 0.94420 0.99342 0.95368 0.88718 1.22350 0.98987 0.98468 0.95214 1.22850 0.96520 0.97397 0.99319 1.22743 0.95522 1.01491 0.94335 1.22265 0.94570 0.94878 0.95964 1.20601 0.85122 0.92710 0.97088 1.42334 1.02722 1.10994 1.81404 1.19162 0.85824 0.94845 1.37445 0.91289 1.24734 0.97836 0.95883 1.02370 1.69654 1.27453 1.06578 1.54329 0.86280 0.83652 0.77973 0.78330 1.21316 1.21723 1.21324 1.22457 0.79319 0.98600 0.99929 0.90634 0.89020 0.88997 0.90372 0.91105 0.92042 0.91458 0.92092 0.92157 0.90810 0.91377 0.96255 0.95900 0.78108 0.93434 0.89702 0.90753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.59 10.24 36.00 0.37 -1.22 16 2 C 0.53 7.82 7.98 -10.99 -0.09 7.73 16 3 O -0.55 -10.87 17.36 5.56 0.10 -10.78 16 4 N -0.62 -8.73 2.53 -169.45 -0.43 -9.16 16 5 C 0.10 1.11 6.23 -2.46 -0.02 1.09 16 6 C -0.10 -1.16 3.62 -88.30 -0.32 -1.48 16 7 H 0.09 1.02 7.88 -51.93 -0.41 0.61 16 8 C -0.11 -1.20 6.28 -25.16 -0.16 -1.36 16 9 C -0.12 -1.59 6.57 -23.51 -0.15 -1.74 16 10 C -0.10 -1.67 5.50 -23.87 -0.13 -1.80 16 11 C -0.08 -1.19 0.67 -152.21 -0.10 -1.29 16 12 C 0.17 3.35 5.10 -4.04 -0.02 3.33 16 13 N -0.73 -18.19 5.23 -59.91 -0.31 -18.50 16 14 C -0.24 -6.73 9.99 -15.06 -0.15 -6.88 16 15 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 16 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 17 N -0.93 -28.50 13.06 55.49 0.72 -27.77 16 18 Si 0.91 22.53 29.55 -169.99 -5.02 17.51 16 19 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 20 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 C 0.12 2.04 5.51 -2.48 -0.01 2.03 16 23 H 0.07 0.53 5.99 -51.93 -0.31 0.22 16 24 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 25 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 26 H 0.08 0.62 5.73 -51.93 -0.30 0.32 16 27 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.06 0.54 7.45 -51.93 -0.39 0.15 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.84 7.66 -51.93 -0.40 0.44 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.07 1.26 7.96 -51.93 -0.41 0.85 16 33 H 0.07 1.24 7.42 -51.93 -0.39 0.86 16 34 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.38 10.22 7.06 -40.82 -0.29 9.93 16 37 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 38 H 0.08 1.70 7.15 -51.93 -0.37 1.33 16 39 H 0.07 1.36 7.95 -51.93 -0.41 0.95 16 LS Contribution 307.62 15.07 4.64 4.64 Total: -1.00 -32.93 307.62 -7.37 -40.30 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -6.18 Total: 5.80 kcal Atomic # 6 Polarization: -1.16 SS G_CDS: -0.88 Total: -2.04 kcal Atomic # 7 Polarization: -55.41 SS G_CDS: -0.02 Total: -55.43 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: 0.10 Total: -10.78 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -32.93 -7.37 -40.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112227545.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.924 kcal (2) G-P(sol) polarization free energy of solvation -32.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds