Wall clock time and date at job start Sun Mar 29 2020 23:01:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21279 * 120.00267 * 2 1 4 4 N 1.34781 * 119.99929 * 180.02562 * 2 1 3 5 5 C 1.48115 * 127.84120 * 359.96873 * 4 2 1 6 6 C 1.54327 * 104.69259 * 219.77333 * 5 4 2 7 7 H 1.08997 * 111.85036 * 214.55037 * 6 5 4 8 8 C 1.54154 * 108.86718 * 89.54194 * 6 5 4 9 9 C 1.54837 * 104.33720 * 271.20306 * 8 6 5 10 10 C 1.57142 * 102.91154 * 321.71185 * 9 8 6 11 11 C 1.54164 * 103.23439 * 38.19464 * 10 9 8 12 12 C 1.52996 * 111.81979 * 213.14911 * 11 10 9 13 13 N 1.46498 * 109.47059 * 298.61215 * 12 11 10 14 14 C 1.36943 * 119.99752 * 179.72430 * 13 12 11 15 15 H 1.08002 * 119.99793 * 0.27665 * 14 13 12 16 16 C 1.38811 * 120.00012 * 180.27737 * 14 13 12 17 17 N 1.31624 * 119.99698 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00072 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47213 * 60.00246 * 18 16 14 20 20 H 1.48502 * 109.47317 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47081 * 299.99875 * 18 16 14 22 22 C 1.48113 * 127.84280 * 180.02562 * 4 2 1 23 23 H 1.08998 * 109.47538 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.47264 * 299.99750 * 1 2 3 25 25 H 1.09000 * 109.47221 * 59.99291 * 1 2 3 26 26 H 1.09001 * 110.39613 * 338.57770 * 5 4 2 27 27 H 1.08995 * 110.39289 * 100.85012 * 5 4 2 28 28 H 1.08998 * 110.46369 * 29.92122 * 8 6 5 29 29 H 1.09003 * 110.45961 * 152.49485 * 8 6 5 30 30 H 1.09000 * 110.75414 * 80.14217 * 9 8 6 31 31 H 1.08996 * 110.76168 * 203.32826 * 9 8 6 32 32 H 1.09000 * 111.52047 * 279.58599 * 10 9 8 33 33 H 1.09007 * 110.44597 * 156.28507 * 10 9 8 34 34 H 1.09004 * 109.47066 * 178.61483 * 12 11 10 35 35 H 1.08994 * 109.46974 * 58.61630 * 12 11 10 36 36 H 0.97001 * 120.00384 * 0.02562 * 13 12 11 37 37 H 0.96999 * 119.99739 * 180.02562 * 17 16 14 38 38 H 1.09007 * 110.39223 * 21.44418 * 22 4 2 39 39 H 1.09001 * 110.39375 * 259.05572 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.6222 -2.5390 -0.0005 6 6 2.5376 -3.3344 0.9540 7 1 2.6635 -4.3671 0.6286 8 6 1.9759 -3.2300 2.3857 9 6 2.6377 -1.9558 2.9652 10 6 4.0952 -2.0205 2.3812 11 6 3.8796 -2.5602 0.9533 12 6 5.0456 -3.4385 0.4953 13 7 6.2768 -2.6448 0.4764 14 6 7.4595 -3.2247 0.1018 15 1 7.4837 -4.2659 -0.1839 16 6 8.6271 -2.4741 0.0894 17 7 8.5976 -1.2053 0.4382 18 14 10.2403 -3.2648 -0.4222 19 1 10.1243 -3.7707 -1.8135 20 1 11.3297 -2.2583 -0.3502 21 1 10.5495 -4.3943 0.4911 22 6 3.6481 -1.3694 -0.0001 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 0.5982 -2.5321 0.3731 27 1 1.6566 -2.9631 -1.0040 28 1 0.8918 -3.1195 2.3627 29 1 2.2582 -4.1055 2.9706 30 1 2.1215 -1.0606 2.6184 31 1 2.6565 -1.9914 4.0544 32 1 4.7258 -2.7001 2.9544 33 1 4.5372 -1.0245 2.3493 34 1 4.8428 -3.8185 -0.5060 35 1 5.1629 -4.2749 1.1844 36 1 6.2550 -1.7097 0.7334 37 1 9.4134 -0.6807 0.4291 38 1 4.1540 -0.4793 0.3743 39 1 3.9983 -1.6127 -1.0032 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112227545.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:01:10 Heat of formation + Delta-G solvation = -49.667767 kcal Electronic energy + Delta-G solvation = -19589.101147 eV Core-core repulsion = 16723.499992 eV Total energy + Delta-G solvation = -2865.601155 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.77176 -39.57849 -36.49676 -35.29445 -33.52667 -31.63111 -31.01890 -29.89252 -26.84453 -26.43952 -25.19163 -23.64728 -21.23604 -20.42675 -19.94715 -18.94687 -17.88955 -17.47283 -16.53741 -16.36582 -15.88498 -15.53487 -15.15077 -14.99047 -14.74664 -14.30785 -14.15236 -13.86191 -13.45056 -13.30554 -13.05380 -13.00006 -12.80417 -12.63293 -12.24244 -12.04577 -11.82866 -11.75995 -11.67607 -11.53541 -11.48658 -11.39017 -10.93220 -10.89057 -9.67010 -8.99150 -7.94370 -5.23533 1.45955 1.49640 1.55779 1.62677 2.03012 2.55907 3.30661 3.38913 3.52857 3.60647 3.87202 4.17463 4.20177 4.21429 4.28714 4.38947 4.43973 4.57304 4.59571 4.65334 4.69467 4.72994 4.76010 4.91794 4.97285 5.00570 5.05578 5.11830 5.15950 5.22977 5.33696 5.36848 5.47029 5.47483 5.50424 6.26847 6.65373 7.16152 7.32996 8.10350 8.32237 9.29353 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.029092 B = 0.005811 C = 0.005365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.248620 B = 4817.168442 C = 5218.062911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.515 3.485 3 O -0.614 6.614 4 N -0.615 5.615 5 C 0.103 3.897 6 C -0.091 4.091 7 H 0.116 0.884 8 C -0.103 4.103 9 C -0.115 4.115 10 C -0.107 4.107 11 C -0.070 4.070 12 C 0.171 3.829 13 N -0.744 5.744 14 C -0.243 4.243 15 H 0.080 0.920 16 C -0.079 4.079 17 N -0.974 5.974 18 Si 0.975 3.025 19 H -0.277 1.277 20 H -0.299 1.299 21 H -0.275 1.275 22 C 0.123 3.877 23 H 0.110 0.890 24 H 0.104 0.896 25 H 0.103 0.897 26 H 0.122 0.878 27 H 0.086 0.914 28 H 0.097 0.903 29 H 0.078 0.922 30 H 0.052 0.948 31 H 0.071 0.929 32 H 0.059 0.941 33 H 0.027 0.973 34 H 0.026 0.974 35 H 0.030 0.970 36 H 0.371 0.629 37 H 0.250 0.750 38 H 0.037 0.963 39 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.771 -6.785 1.914 22.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.307 3.693 3 O -0.497 6.497 4 N -0.348 5.348 5 C -0.018 4.018 6 C -0.110 4.110 7 H 0.134 0.866 8 C -0.140 4.140 9 C -0.153 4.153 10 C -0.145 4.145 11 C -0.072 4.072 12 C 0.045 3.955 13 N -0.387 5.387 14 C -0.375 4.375 15 H 0.098 0.902 16 C -0.271 4.271 17 N -0.625 5.625 18 Si 0.804 3.196 19 H -0.203 1.203 20 H -0.225 1.225 21 H -0.201 1.201 22 C 0.000 4.000 23 H 0.129 0.871 24 H 0.123 0.877 25 H 0.122 0.878 26 H 0.140 0.860 27 H 0.104 0.896 28 H 0.116 0.884 29 H 0.096 0.904 30 H 0.070 0.930 31 H 0.089 0.911 32 H 0.078 0.922 33 H 0.046 0.954 34 H 0.044 0.956 35 H 0.048 0.952 36 H 0.203 0.797 37 H 0.058 0.942 38 H 0.056 0.944 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -21.447 -6.294 1.840 22.427 hybrid contribution 1.919 0.656 -0.251 2.043 sum -19.528 -5.638 1.589 20.388 Atomic orbital electron populations 1.21899 0.86772 1.06716 1.06081 1.21551 0.92325 0.81070 0.74367 1.90716 1.72380 1.32976 1.53613 1.49202 1.06901 1.07146 1.71552 1.22872 0.99130 0.79107 1.00677 1.22763 0.91444 0.99870 0.96963 0.86614 1.22370 1.00775 0.97038 0.93806 1.22796 0.93731 0.98768 0.99985 1.22680 0.97843 0.98845 0.95117 1.22150 0.95862 0.94369 0.94774 1.20791 0.84350 0.92882 0.97514 1.42582 1.04065 1.10860 1.81154 1.19648 0.86881 0.95249 1.35724 0.90232 1.25607 1.01509 0.96434 1.03503 1.69847 1.27836 1.08238 1.56584 0.85182 0.79057 0.76969 0.78373 1.20271 1.22529 1.20124 1.22109 0.81782 0.97283 0.98862 0.87102 0.87750 0.87839 0.85975 0.89576 0.88410 0.90370 0.92959 0.91050 0.92198 0.95361 0.95578 0.95207 0.79742 0.94174 0.94411 0.92654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.34 10.24 71.23 0.73 -1.61 16 2 C 0.51 14.90 7.98 87.66 0.70 15.60 16 3 O -0.61 -25.46 17.36 -3.03 -0.05 -25.52 16 4 N -0.62 -16.71 2.53 -808.42 -2.04 -18.76 16 5 C 0.10 1.73 6.23 86.52 0.54 2.26 16 6 C -0.09 -1.80 3.62 -9.29 -0.03 -1.84 16 7 H 0.12 1.91 7.88 -2.39 -0.02 1.90 16 8 C -0.10 -1.71 6.28 31.61 0.20 -1.51 16 9 C -0.12 -2.78 6.57 32.68 0.21 -2.57 16 10 C -0.11 -3.59 5.50 32.44 0.18 -3.42 16 11 C -0.07 -2.22 0.67 -50.69 -0.03 -2.25 16 12 C 0.17 6.66 5.10 86.38 0.44 7.10 16 13 N -0.74 -38.54 5.23 -343.46 -1.80 -40.34 16 14 C -0.24 -13.78 9.99 84.03 0.84 -12.94 16 15 H 0.08 4.25 7.83 -2.91 -0.02 4.22 16 16 C -0.08 -4.64 5.50 84.86 0.47 -4.18 16 17 N -0.97 -62.24 13.06 21.65 0.28 -61.96 16 18 Si 0.98 47.15 29.55 68.60 2.03 49.18 16 19 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 20 H -0.30 -14.69 7.11 99.48 0.71 -13.98 16 21 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 22 C 0.12 4.45 5.51 86.51 0.48 4.92 16 23 H 0.11 0.86 5.99 -2.39 -0.01 0.85 16 24 H 0.10 1.38 8.14 -2.38 -0.02 1.36 16 25 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.12 1.05 5.73 -2.39 -0.01 1.04 16 27 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.10 1.03 7.45 -2.39 -0.02 1.02 16 29 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.05 1.36 7.66 -2.39 -0.02 1.34 16 31 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.06 2.13 7.96 -2.39 -0.02 2.11 16 33 H 0.03 1.13 7.42 -2.38 -0.02 1.12 16 34 H 0.03 1.00 8.14 -2.38 -0.02 0.98 16 35 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.37 21.11 7.06 -92.71 -0.65 20.46 16 37 H 0.25 15.53 8.31 -92.71 -0.77 14.76 16 38 H 0.04 1.69 7.15 -2.38 -0.02 1.67 16 39 H 0.06 2.15 7.95 -2.39 -0.02 2.14 16 Total: -1.00 -77.96 307.62 3.52 -74.44 By element: Atomic # 1 Polarization: 23.00 SS G_CDS: 0.38 Total: 23.38 kcal Atomic # 6 Polarization: -5.14 SS G_CDS: 4.72 Total: -0.43 kcal Atomic # 7 Polarization: -117.50 SS G_CDS: -3.56 Total: -121.06 kcal Atomic # 8 Polarization: -25.46 SS G_CDS: -0.05 Total: -25.52 kcal Atomic # 14 Polarization: 47.15 SS G_CDS: 2.03 Total: 49.18 kcal Total: -77.96 3.52 -74.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112227545.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.776 kcal (2) G-P(sol) polarization free energy of solvation -77.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds