Wall clock time and date at job start Sun Mar 29 2020 23:49:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.46574 * 2 1 4 4 N 1.46897 * 109.46937 * 119.99709 * 2 1 3 5 5 C 1.46910 * 111.00178 * 275.00105 * 4 2 1 6 6 C 1.52992 * 109.47127 * 180.02562 * 5 4 2 7 7 H 1.09002 * 109.47103 * 304.99844 * 6 5 4 8 8 C 1.52997 * 109.47482 * 65.00091 * 6 5 4 9 9 C 1.52999 * 109.46961 * 185.00452 * 6 5 4 10 10 C 1.50704 * 109.47137 * 175.00116 * 9 6 5 11 11 H 1.07991 * 120.00119 * 359.97438 * 10 9 6 12 12 C 1.37875 * 119.99876 * 179.97438 * 10 9 6 13 13 N 1.31514 * 120.00009 * 179.97438 * 12 10 9 14 14 Si 1.86805 * 120.00139 * 359.97438 * 12 10 9 15 15 H 1.48499 * 109.46942 * 90.00357 * 14 12 10 16 16 H 1.48500 * 109.47201 * 210.00165 * 14 12 10 17 17 H 1.48497 * 109.47273 * 330.00530 * 14 12 10 18 18 C 1.50698 * 109.47163 * 240.00006 * 2 1 3 19 19 N 1.30518 * 126.34297 * 285.02078 * 18 2 1 20 20 N 1.28599 * 109.66967 * 179.97438 * 19 18 2 21 21 C 1.30515 * 109.67404 * 359.97438 * 20 19 18 22 22 N 1.35493 * 126.34695 * 104.71416 * 18 2 1 23 23 C 1.46495 * 126.98088 * 0.03329 * 22 18 2 24 24 H 1.08998 * 109.46952 * 60.00131 * 1 2 3 25 25 H 1.09003 * 109.47049 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47568 * 300.00422 * 1 2 3 27 27 H 1.00896 * 111.00466 * 38.95453 * 4 2 1 28 28 H 1.08996 * 109.46545 * 59.99934 * 5 4 2 29 29 H 1.09001 * 109.46699 * 300.00610 * 5 4 2 30 30 H 1.09002 * 109.47153 * 59.99783 * 8 6 5 31 31 H 1.09001 * 109.46832 * 299.99974 * 8 6 5 32 32 H 1.09004 * 109.47261 * 179.97438 * 8 6 5 33 33 H 1.09006 * 109.47194 * 294.99813 * 9 6 5 34 34 H 1.08997 * 109.47756 * 54.99294 * 9 6 5 35 35 H 0.97002 * 119.99910 * 180.02562 * 13 12 10 36 36 H 1.08004 * 126.34688 * 180.02562 * 21 20 19 37 37 H 1.09006 * 109.47411 * 89.99869 * 23 22 18 38 38 H 1.08998 * 109.47383 * 210.00044 * 23 22 18 39 39 H 1.09006 * 109.47127 * 330.00336 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 2.0824 0.2227 2.3470 6 6 2.5961 -0.5327 3.5742 7 1 1.9708 -1.4080 3.7501 8 6 4.0398 -0.9776 3.3320 9 6 2.5437 0.3854 4.7970 10 6 2.9327 -0.3935 6.0271 11 1 3.1910 -1.4388 5.9450 12 6 2.9588 0.2285 7.2573 13 7 3.2977 -0.4513 8.3308 14 14 2.5126 2.0369 7.3992 15 1 1.0534 2.1693 7.6407 16 1 3.2587 2.6435 8.5309 17 1 2.8711 2.7356 6.1389 18 6 2.0323 -0.7104 -1.2304 19 7 2.0333 -1.9998 -1.4329 20 7 2.5336 -2.2559 -2.5896 21 6 2.8740 -1.1416 -3.1777 22 7 2.5614 -0.1286 -2.3339 23 6 2.7579 1.3044 -2.5662 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.4496 -1.4978 1.4101 28 1 1.0870 0.6164 2.5525 29 1 2.7587 1.0464 2.1182 30 1 4.6651 -0.1022 3.1561 31 1 4.0770 -1.6317 2.4608 32 1 4.4059 -1.5154 4.2065 33 1 3.2367 1.2153 4.6583 34 1 1.5321 0.7732 4.9172 35 1 3.3157 -0.0138 9.1964 36 1 3.3189 -1.0446 -4.1570 37 1 3.7439 1.5989 -2.2066 38 1 2.6832 1.5131 -3.6334 39 1 1.9930 1.8675 -2.0313 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119300187.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:49:34 Heat of formation + Delta-G solvation = 67.484224 kcal Electronic energy + Delta-G solvation = -18504.141865 eV Core-core repulsion = 15675.913553 eV Total energy + Delta-G solvation = -2828.228312 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.16929 -37.64667 -35.31472 -34.81083 -32.32337 -30.66344 -29.14636 -27.88517 -27.26833 -25.37162 -23.75483 -22.52195 -21.86216 -20.45474 -19.12536 -17.36288 -16.74404 -16.49921 -15.59331 -15.27108 -14.86821 -14.61190 -14.12632 -13.77890 -13.63075 -13.28454 -13.08338 -12.86067 -12.30364 -12.21911 -11.74036 -11.68334 -11.67042 -11.43102 -10.94505 -10.72855 -10.39861 -10.36220 -10.32744 -9.92720 -9.65645 -9.50451 -9.22600 -9.05173 -8.50530 -8.28687 -6.00438 -3.97387 1.70236 2.28585 2.87629 3.30823 3.38475 3.41215 4.04770 4.19690 4.35797 4.47180 4.48834 4.65160 4.71461 4.90166 4.96392 5.27023 5.32487 5.35423 5.47657 5.57989 5.71435 5.73415 5.89714 6.01680 6.10328 6.27334 6.40973 6.60253 6.68624 6.84880 7.04819 7.12709 7.20430 7.29993 7.46931 7.54392 7.83892 8.59361 8.71920 9.06058 9.62125 11.13099 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.038097 B = 0.004085 C = 0.003947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.782018 B = 6852.514724 C = 7092.166241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.171 3.829 3 H 0.090 0.910 4 N -0.672 5.672 5 C 0.063 3.937 6 C -0.074 4.074 7 H 0.062 0.938 8 C -0.125 4.125 9 C -0.008 4.008 10 C -0.512 4.512 11 H 0.074 0.926 12 C 0.064 3.936 13 N -0.905 5.905 14 Si 0.878 3.122 15 H -0.278 1.278 16 H -0.289 1.289 17 H -0.267 1.267 18 C 0.198 3.802 19 N -0.279 5.279 20 N -0.299 5.299 21 C 0.139 3.861 22 N -0.479 5.479 23 C 0.072 3.928 24 H 0.057 0.943 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.353 0.647 28 H 0.029 0.971 29 H 0.066 0.934 30 H 0.037 0.963 31 H 0.045 0.955 32 H 0.059 0.941 33 H 0.015 0.985 34 H 0.008 0.992 35 H 0.262 0.738 36 H 0.215 0.785 37 H 0.084 0.916 38 H 0.091 0.909 39 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.425 6.898 -23.336 24.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.058 3.942 3 H 0.108 0.892 4 N -0.304 5.304 5 C -0.065 4.065 6 C -0.092 4.092 7 H 0.081 0.919 8 C -0.182 4.182 9 C -0.046 4.046 10 C -0.550 4.550 11 H 0.092 0.908 12 C -0.136 4.136 13 N -0.544 5.544 14 Si 0.706 3.294 15 H -0.204 1.204 16 H -0.215 1.215 17 H -0.191 1.191 18 C -0.071 4.071 19 N -0.119 5.119 20 N -0.138 5.138 21 C -0.148 4.148 22 N -0.171 5.171 23 C -0.072 4.072 24 H 0.076 0.924 25 H 0.089 0.911 26 H 0.090 0.910 27 H 0.173 0.827 28 H 0.047 0.953 29 H 0.084 0.916 30 H 0.056 0.944 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.033 0.967 34 H 0.026 0.974 35 H 0.072 0.928 36 H 0.232 0.768 37 H 0.102 0.898 38 H 0.110 0.890 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.923 5.521 -23.077 23.907 hybrid contribution -0.811 2.572 0.048 2.697 sum -3.734 8.093 -23.029 24.694 Atomic orbital electron populations 1.22481 0.95003 1.03631 1.02569 1.19690 0.92999 0.95808 0.85722 0.89168 1.60299 1.57336 1.09981 1.02786 1.22254 0.99024 0.95145 0.90109 1.21005 0.97042 0.98527 0.92670 0.91926 1.21600 0.95707 1.00213 1.00704 1.19611 0.95946 0.95445 0.93609 1.21140 1.45362 0.98427 0.90120 0.90765 1.25033 0.94928 0.97775 0.95873 1.69918 1.49178 1.36468 0.98853 0.86806 0.78610 0.86240 0.77743 1.20443 1.21502 1.19142 1.24862 1.00342 0.91017 0.90852 1.74241 1.17603 1.10838 1.09226 1.74269 1.14191 1.23041 1.02316 1.26368 1.05142 0.83745 0.99564 1.46177 1.46795 1.09224 1.14860 1.22103 1.04064 0.76982 1.04012 0.92386 0.91082 0.90978 0.82682 0.95320 0.91591 0.94392 0.93571 0.92163 0.96673 0.97358 0.92842 0.76821 0.89791 0.89003 0.89176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.73 9.14 37.16 0.34 -1.39 16 2 C 0.17 1.93 2.89 -68.87 -0.20 1.73 16 3 H 0.09 0.87 6.90 -51.93 -0.36 0.51 16 4 N -0.67 -9.42 5.68 -107.95 -0.61 -10.03 16 5 C 0.06 0.96 4.87 -3.82 -0.02 0.94 16 6 C -0.07 -1.43 2.48 -90.63 -0.22 -1.65 16 7 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 8 C -0.12 -2.44 8.89 37.16 0.33 -2.11 16 9 C -0.01 -0.19 3.52 -27.88 -0.10 -0.29 16 10 C -0.51 -14.46 8.96 -34.44 -0.31 -14.77 16 11 H 0.07 2.26 7.30 -52.49 -0.38 1.88 16 12 C 0.06 1.88 5.47 -17.82 -0.10 1.78 16 13 N -0.90 -28.01 13.96 55.43 0.77 -27.24 16 14 Si 0.88 21.62 27.47 -169.99 -4.67 16.95 16 15 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 16 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 17 H -0.27 -6.27 6.54 56.52 0.37 -5.90 16 18 C 0.20 2.50 6.87 -154.99 -1.07 1.44 16 19 N -0.28 -4.43 12.21 32.79 0.40 -4.03 16 20 N -0.30 -4.44 12.21 29.69 0.36 -4.08 16 21 C 0.14 1.42 12.74 -89.95 -1.15 0.27 16 22 N -0.48 -4.57 3.15 -122.69 -0.39 -4.96 16 23 C 0.07 0.33 10.84 59.84 0.65 0.98 16 24 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.07 0.77 8.13 -51.93 -0.42 0.35 16 26 H 0.07 0.68 7.45 -51.93 -0.39 0.29 16 27 H 0.35 5.07 8.47 -39.29 -0.33 4.74 16 28 H 0.03 0.42 7.44 -51.93 -0.39 0.03 16 29 H 0.07 0.99 8.06 -51.93 -0.42 0.57 16 30 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.05 0.84 7.75 -51.93 -0.40 0.44 16 32 H 0.06 1.31 6.95 -51.93 -0.36 0.95 16 33 H 0.01 0.35 7.20 -51.93 -0.37 -0.02 16 34 H 0.01 0.19 7.57 -51.93 -0.39 -0.20 16 35 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 36 H 0.22 1.14 8.06 -52.48 -0.42 0.72 16 37 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 38 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 39 H 0.09 0.33 7.47 -51.93 -0.39 -0.06 16 LS Contribution 319.87 15.07 4.82 4.82 Total: -1.00 -34.74 319.87 -7.46 -42.20 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -6.31 Total: -0.58 kcal Atomic # 6 Polarization: -11.22 SS G_CDS: -1.84 Total: -13.06 kcal Atomic # 7 Polarization: -50.87 SS G_CDS: 0.54 Total: -50.33 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.67 Total: 16.95 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -34.74 -7.46 -42.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119300187.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.683 kcal (2) G-P(sol) polarization free energy of solvation -34.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds