Wall clock time and date at job start Sun Mar 29 2020 23:49:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.46574 * 2 1 4 4 N 1.46897 * 109.46937 * 119.99709 * 2 1 3 5 5 C 1.46910 * 111.00178 * 275.00105 * 4 2 1 6 6 C 1.52992 * 109.47127 * 180.02562 * 5 4 2 7 7 H 1.09002 * 109.47103 * 304.99844 * 6 5 4 8 8 C 1.52997 * 109.47482 * 65.00091 * 6 5 4 9 9 C 1.52999 * 109.46961 * 185.00452 * 6 5 4 10 10 C 1.50704 * 109.47137 * 175.00116 * 9 6 5 11 11 H 1.07991 * 120.00119 * 359.97438 * 10 9 6 12 12 C 1.37875 * 119.99876 * 179.97438 * 10 9 6 13 13 N 1.31514 * 120.00009 * 179.97438 * 12 10 9 14 14 Si 1.86805 * 120.00139 * 359.97438 * 12 10 9 15 15 H 1.48499 * 109.46942 * 90.00357 * 14 12 10 16 16 H 1.48500 * 109.47201 * 210.00165 * 14 12 10 17 17 H 1.48497 * 109.47273 * 330.00530 * 14 12 10 18 18 C 1.50698 * 109.47163 * 240.00006 * 2 1 3 19 19 N 1.30518 * 126.34297 * 285.02078 * 18 2 1 20 20 N 1.28599 * 109.66967 * 179.97438 * 19 18 2 21 21 C 1.30515 * 109.67404 * 359.97438 * 20 19 18 22 22 N 1.35493 * 126.34695 * 104.71416 * 18 2 1 23 23 C 1.46495 * 126.98088 * 0.03329 * 22 18 2 24 24 H 1.08998 * 109.46952 * 60.00131 * 1 2 3 25 25 H 1.09003 * 109.47049 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47568 * 300.00422 * 1 2 3 27 27 H 1.00896 * 111.00466 * 38.95453 * 4 2 1 28 28 H 1.08996 * 109.46545 * 59.99934 * 5 4 2 29 29 H 1.09001 * 109.46699 * 300.00610 * 5 4 2 30 30 H 1.09002 * 109.47153 * 59.99783 * 8 6 5 31 31 H 1.09001 * 109.46832 * 299.99974 * 8 6 5 32 32 H 1.09004 * 109.47261 * 179.97438 * 8 6 5 33 33 H 1.09006 * 109.47194 * 294.99813 * 9 6 5 34 34 H 1.08997 * 109.47756 * 54.99294 * 9 6 5 35 35 H 0.97002 * 119.99910 * 180.02562 * 13 12 10 36 36 H 1.08004 * 126.34688 * 180.02562 * 21 20 19 37 37 H 1.09006 * 109.47411 * 89.99869 * 23 22 18 38 38 H 1.08998 * 109.47383 * 210.00044 * 23 22 18 39 39 H 1.09006 * 109.47127 * 330.00336 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 2.0824 0.2227 2.3470 6 6 2.5961 -0.5327 3.5742 7 1 1.9708 -1.4080 3.7501 8 6 4.0398 -0.9776 3.3320 9 6 2.5437 0.3854 4.7970 10 6 2.9327 -0.3935 6.0271 11 1 3.1910 -1.4388 5.9450 12 6 2.9588 0.2285 7.2573 13 7 3.2977 -0.4513 8.3308 14 14 2.5126 2.0369 7.3992 15 1 1.0534 2.1693 7.6407 16 1 3.2587 2.6435 8.5309 17 1 2.8711 2.7356 6.1389 18 6 2.0323 -0.7104 -1.2304 19 7 2.0333 -1.9998 -1.4329 20 7 2.5336 -2.2559 -2.5896 21 6 2.8740 -1.1416 -3.1777 22 7 2.5614 -0.1286 -2.3339 23 6 2.7579 1.3044 -2.5662 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.4496 -1.4978 1.4101 28 1 1.0870 0.6164 2.5525 29 1 2.7587 1.0464 2.1182 30 1 4.6651 -0.1022 3.1561 31 1 4.0770 -1.6317 2.4608 32 1 4.4059 -1.5154 4.2065 33 1 3.2367 1.2153 4.6583 34 1 1.5321 0.7732 4.9172 35 1 3.3157 -0.0138 9.1964 36 1 3.3189 -1.0446 -4.1570 37 1 3.7439 1.5989 -2.2066 38 1 2.6832 1.5131 -3.6334 39 1 1.9930 1.8675 -2.0313 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119300187.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:49:34 Heat of formation + Delta-G solvation = 44.161805 kcal Electronic energy + Delta-G solvation = -18505.153201 eV Core-core repulsion = 15675.913553 eV Total energy + Delta-G solvation = -2829.239648 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.99755 -38.82176 -36.51231 -35.80095 -34.31607 -31.86202 -30.18007 -29.04126 -28.37656 -26.70603 -24.87108 -23.80917 -23.00431 -21.39074 -20.62315 -18.93159 -18.02258 -17.25044 -16.61400 -16.27171 -16.18870 -15.99397 -15.42061 -14.95175 -14.77656 -14.29375 -14.14133 -13.86014 -13.66643 -13.49325 -13.10201 -12.98214 -12.81226 -12.54770 -12.40832 -12.27155 -12.10743 -11.78529 -11.44870 -11.22254 -11.21402 -11.04788 -11.00884 -10.71073 -10.19193 -9.34300 -8.23377 -6.26343 0.92984 1.38233 1.40706 1.52366 1.65072 1.97647 2.40470 3.11924 3.16781 3.40098 3.78400 3.93710 3.97514 4.08075 4.16010 4.33351 4.42193 4.47062 4.52812 4.65145 4.70810 4.75460 4.87418 4.95409 4.95804 5.00521 5.11517 5.16201 5.28904 5.40727 5.41109 5.56911 5.71430 5.75122 5.98779 6.12582 6.35893 6.40395 6.82060 7.37136 7.85001 8.93809 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.038097 B = 0.004085 C = 0.003947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.782018 B = 6852.514724 C = 7092.166241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.174 3.826 3 H 0.115 0.885 4 N -0.684 5.684 5 C 0.079 3.921 6 C -0.071 4.071 7 H 0.046 0.954 8 C -0.115 4.115 9 C -0.004 4.004 10 C -0.521 4.521 11 H 0.029 0.971 12 C -0.002 4.002 13 N -0.957 5.957 14 Si 0.952 3.048 15 H -0.267 1.267 16 H -0.289 1.289 17 H -0.241 1.241 18 C 0.189 3.811 19 N -0.331 5.331 20 N -0.356 5.356 21 C 0.156 3.844 22 N -0.474 5.474 23 C 0.061 3.939 24 H 0.075 0.925 25 H 0.052 0.948 26 H 0.078 0.922 27 H 0.348 0.652 28 H 0.043 0.957 29 H 0.079 0.921 30 H 0.046 0.954 31 H 0.055 0.945 32 H 0.024 0.976 33 H 0.022 0.978 34 H 0.020 0.980 35 H 0.264 0.736 36 H 0.260 0.740 37 H 0.091 0.909 38 H 0.122 0.878 39 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.011 10.413 -25.803 28.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.062 3.938 3 H 0.132 0.868 4 N -0.316 5.316 5 C -0.050 4.050 6 C -0.090 4.090 7 H 0.065 0.935 8 C -0.172 4.172 9 C -0.042 4.042 10 C -0.559 4.559 11 H 0.047 0.953 12 C -0.198 4.198 13 N -0.599 5.599 14 Si 0.776 3.224 15 H -0.192 1.192 16 H -0.215 1.215 17 H -0.164 1.164 18 C -0.081 4.081 19 N -0.170 5.170 20 N -0.195 5.195 21 C -0.132 4.132 22 N -0.165 5.165 23 C -0.080 4.080 24 H 0.094 0.906 25 H 0.072 0.928 26 H 0.097 0.903 27 H 0.167 0.833 28 H 0.061 0.939 29 H 0.097 0.903 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.043 0.957 33 H 0.040 0.960 34 H 0.038 0.962 35 H 0.073 0.927 36 H 0.275 0.725 37 H 0.110 0.890 38 H 0.141 0.859 39 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -3.511 9.051 -25.581 27.361 hybrid contribution -0.566 1.395 0.748 1.682 sum -4.077 10.447 -24.833 27.248 Atomic orbital electron populations 1.22398 0.93902 1.02874 1.03744 1.19802 0.93826 0.96301 0.83908 0.86764 1.60198 1.58129 1.09966 1.03305 1.21972 0.99787 0.94660 0.88542 1.20886 0.96744 0.97813 0.93562 0.93528 1.21480 0.96088 1.00280 0.99375 1.19550 0.96291 0.95534 0.92837 1.21489 1.44745 0.97110 0.92557 0.95274 1.26073 0.94904 1.03525 0.95300 1.70096 1.51107 1.39012 0.99658 0.85629 0.78726 0.79398 0.78683 1.19215 1.21478 1.16436 1.25013 1.00496 0.90609 0.92004 1.74116 1.19454 1.13067 1.10373 1.74147 1.16656 1.25740 1.02937 1.27185 1.02774 0.82832 1.00448 1.46430 1.45474 1.11001 1.13570 1.22524 1.04938 0.74032 1.06456 0.90598 0.92848 0.90287 0.83324 0.93853 0.90310 0.93501 0.92621 0.95725 0.95974 0.96160 0.92747 0.72462 0.89025 0.85941 0.87888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.92 9.14 71.98 0.66 -2.26 16 2 C 0.17 3.49 2.89 44.17 0.13 3.62 16 3 H 0.11 1.72 6.90 -2.38 -0.02 1.71 16 4 N -0.68 -18.10 5.68 -495.45 -2.82 -20.91 16 5 C 0.08 2.20 4.87 86.30 0.42 2.62 16 6 C -0.07 -2.72 2.48 -10.80 -0.03 -2.74 16 7 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 8 C -0.11 -4.51 8.89 71.98 0.64 -3.87 16 9 C 0.00 -0.19 3.52 29.85 0.10 -0.09 16 10 C -0.52 -30.10 8.96 25.60 0.23 -29.87 16 11 H 0.03 1.88 7.30 -2.92 -0.02 1.86 16 12 C 0.00 -0.14 5.47 84.65 0.46 0.32 16 13 N -0.96 -61.07 13.96 21.45 0.30 -60.78 16 14 Si 0.95 43.87 27.47 68.60 1.88 45.76 16 15 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 16 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 17 H -0.24 -10.04 6.54 99.48 0.65 -9.39 16 18 C 0.19 4.47 6.87 137.98 0.95 5.41 16 19 N -0.33 -10.47 12.21 -50.16 -0.61 -11.08 16 20 N -0.36 -10.45 12.21 -59.99 -0.73 -11.18 16 21 C 0.16 2.82 12.74 180.11 2.30 5.12 16 22 N -0.47 -7.66 3.15 -542.08 -1.71 -9.37 16 23 C 0.06 0.30 10.84 127.77 1.38 1.68 16 24 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 25 H 0.05 1.11 8.13 -2.39 -0.02 1.09 16 26 H 0.08 1.25 7.45 -2.39 -0.02 1.23 16 27 H 0.35 9.88 8.47 -89.70 -0.76 9.12 16 28 H 0.04 1.10 7.44 -2.39 -0.02 1.08 16 29 H 0.08 2.04 8.06 -2.39 -0.02 2.02 16 30 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.05 2.05 7.75 -2.39 -0.02 2.03 16 32 H 0.02 1.10 6.95 -2.38 -0.02 1.08 16 33 H 0.02 0.98 7.20 -2.38 -0.02 0.96 16 34 H 0.02 0.87 7.57 -2.39 -0.02 0.86 16 35 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 36 H 0.26 1.78 8.06 -2.91 -0.02 1.76 16 37 H 0.09 0.37 8.14 -2.38 -0.02 0.35 16 38 H 0.12 -0.13 8.14 -2.39 -0.02 -0.15 16 39 H 0.10 0.27 7.47 -2.38 -0.02 0.26 16 Total: -1.00 -79.54 319.87 3.78 -75.77 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: 0.21 Total: 11.84 kcal Atomic # 6 Polarization: -27.29 SS G_CDS: 7.25 Total: -20.05 kcal Atomic # 7 Polarization: -107.75 SS G_CDS: -5.57 Total: -113.32 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 1.88 Total: 45.76 kcal Total: -79.54 3.78 -75.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119300187.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.928 kcal (2) G-P(sol) polarization free energy of solvation -79.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds