Wall clock time and date at job start Sun Mar 29 2020 23:51:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46500 * 109.46970 * 2 1 4 4 N 1.40508 * 127.07186 * 265.30306 * 3 2 1 5 5 H 0.96996 * 126.52232 * 0.03063 * 4 3 2 6 6 C 1.35968 * 106.96576 * 180.15150 * 4 3 2 7 7 N 1.30303 * 109.62124 * 359.58006 * 6 4 3 8 8 C 1.35732 * 110.02666 * 0.26832 * 7 6 4 9 9 N 1.30764 * 126.23547 * 180.02562 * 8 7 6 10 10 C 1.46502 * 119.99678 * 359.97438 * 9 8 7 11 11 C 1.53001 * 109.47042 * 120.00236 * 10 9 8 12 12 C 1.53001 * 109.46782 * 299.99509 * 11 10 9 13 13 C 1.52992 * 109.47096 * 59.99655 * 11 10 9 14 14 C 1.53004 * 109.46755 * 180.02562 * 11 10 9 15 15 C 1.50702 * 109.46718 * 179.97438 * 14 11 10 16 16 H 1.08006 * 120.00035 * 359.97438 * 15 14 11 17 17 C 1.37874 * 119.99902 * 179.97438 * 15 14 11 18 18 N 1.31515 * 120.00355 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00040 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47076 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47421 * 119.99597 * 19 17 15 22 22 H 1.48503 * 109.46847 * 239.99893 * 19 17 15 23 23 H 1.09000 * 109.47666 * 300.00179 * 1 2 3 24 24 H 1.08998 * 109.47353 * 60.00113 * 1 2 3 25 25 H 1.09007 * 109.46906 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47358 * 240.00531 * 2 1 3 27 27 H 1.08998 * 109.47353 * 119.99887 * 2 1 3 28 28 H 1.08002 * 125.19332 * 179.85146 * 6 4 3 29 29 H 1.08997 * 109.46924 * 239.99973 * 10 9 8 30 30 H 1.08996 * 109.47471 * 0.02562 * 10 9 8 31 31 H 1.09000 * 109.47407 * 60.00505 * 12 11 10 32 32 H 1.09008 * 109.46872 * 179.97438 * 12 11 10 33 33 H 1.08996 * 109.47505 * 299.99878 * 12 11 10 34 34 H 1.09001 * 109.46979 * 60.00551 * 13 11 10 35 35 H 1.09008 * 109.47129 * 180.02562 * 13 11 10 36 36 H 1.09000 * 109.47286 * 299.99613 * 13 11 10 37 37 H 1.09001 * 109.46883 * 299.99151 * 14 11 10 38 38 H 1.08994 * 109.47131 * 60.00058 * 14 11 10 39 39 H 0.96995 * 120.00684 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 7 2.3871 2.1492 -1.1173 5 1 2.3672 1.8657 -2.0447 6 6 2.7798 3.3646 -0.6512 7 7 2.6690 3.3921 0.6468 8 6 2.2054 2.1993 1.0991 9 7 1.9768 1.8817 2.3469 10 6 2.2241 2.8602 3.4088 11 6 0.9211 3.1355 4.1621 12 6 -0.1223 3.6904 3.1902 13 6 0.4034 1.8342 4.7780 14 6 1.1792 4.1579 5.2707 15 6 -0.1043 4.4295 6.0122 16 1 -1.0133 3.9238 5.7216 17 6 -0.1182 5.3236 7.0618 18 7 0.9888 5.9390 7.4161 19 14 -1.7090 5.6597 7.9814 20 1 -2.8028 4.8464 7.3920 21 1 -1.5394 5.2995 9.4120 22 1 -2.0496 7.1009 7.8708 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5137 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.1262 4.1839 -1.2637 29 1 2.9674 2.4650 4.1011 30 1 2.5925 3.7874 2.9700 31 1 -0.3063 2.9624 2.4001 32 1 -1.0508 3.8861 3.7268 33 1 0.2465 4.6174 2.7515 34 1 1.1467 1.4390 5.4703 35 1 -0.5252 2.0303 5.3142 36 1 0.2194 1.1063 3.9878 37 1 1.9227 3.7630 5.9632 38 1 1.5478 5.0848 4.8315 39 1 0.9792 6.5676 8.1547 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001120848619.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:51:56 Heat of formation + Delta-G solvation = 103.480080 kcal Electronic energy + Delta-G solvation = -18990.461323 eV Core-core repulsion = 16163.793908 eV Total energy + Delta-G solvation = -2826.667414 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.37733 -36.90864 -34.83178 -33.90496 -32.12151 -30.87911 -29.30001 -26.73445 -26.04360 -25.33883 -23.88748 -22.65493 -22.20646 -19.77665 -18.34126 -17.38039 -16.02190 -15.84961 -15.53991 -15.06824 -14.58329 -14.12651 -14.05216 -13.41521 -13.08631 -12.96124 -12.40741 -12.20219 -11.83417 -11.72675 -11.42213 -11.00624 -10.81812 -10.62773 -10.61975 -10.42610 -10.27275 -10.14552 -9.99104 -9.86776 -9.44499 -8.94411 -8.67592 -8.41543 -8.16768 -6.97327 -5.81220 -3.80319 1.56779 1.67953 3.41714 3.48732 3.53246 3.68101 3.85094 4.49365 4.61036 4.67713 4.98418 5.07445 5.17701 5.44081 5.54150 5.59803 5.69733 6.07487 6.16147 6.22597 6.28614 6.33793 6.71598 6.76768 6.81913 6.88688 6.97493 7.05968 7.12968 7.44170 7.48242 7.52010 7.64886 7.91202 8.08737 8.15782 8.21353 8.65025 8.81309 9.25545 9.81215 11.30539 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.034797 B = 0.004860 C = 0.004592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.484426 B = 5759.986147 C = 6095.707978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.165 3.835 3 N -0.450 5.450 4 N -0.528 5.528 5 H 0.438 0.562 6 C 0.357 3.643 7 N -0.564 5.564 8 C 0.514 3.486 9 N -0.575 5.575 10 C 0.088 3.912 11 C -0.051 4.051 12 C -0.114 4.114 13 C -0.114 4.114 14 C 0.033 3.967 15 C -0.500 4.500 16 H 0.058 0.942 17 C 0.053 3.947 18 N -0.898 5.898 19 Si 0.885 3.115 20 H -0.274 1.274 21 H -0.286 1.286 22 H -0.286 1.286 23 H 0.072 0.928 24 H 0.051 0.949 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.099 0.901 28 H 0.224 0.776 29 H 0.060 0.940 30 H 0.049 0.951 31 H 0.026 0.974 32 H 0.054 0.946 33 H 0.037 0.963 34 H 0.037 0.963 35 H 0.051 0.949 36 H 0.038 0.962 37 H 0.014 0.986 38 H 0.014 0.986 39 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.853 -10.081 -21.492 23.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.044 3.956 3 N -0.266 5.266 4 N -0.258 5.258 5 H 0.283 0.717 6 C 0.058 3.942 7 N -0.298 5.298 8 C 0.148 3.852 9 N -0.310 5.310 10 C -0.042 4.042 11 C -0.051 4.051 12 C -0.172 4.172 13 C -0.171 4.171 14 C -0.005 4.005 15 C -0.539 4.539 16 H 0.076 0.924 17 C -0.147 4.147 18 N -0.539 5.539 19 Si 0.714 3.286 20 H -0.199 1.199 21 H -0.212 1.212 22 H -0.213 1.213 23 H 0.091 0.909 24 H 0.070 0.930 25 H 0.088 0.912 26 H 0.091 0.909 27 H 0.117 0.883 28 H 0.240 0.760 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.045 0.955 32 H 0.073 0.927 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.070 0.930 36 H 0.058 0.942 37 H 0.032 0.968 38 H 0.032 0.968 39 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 2.688 -10.309 -20.080 22.731 hybrid contribution -0.742 0.350 -0.694 1.075 sum 1.946 -9.959 -20.774 23.120 Atomic orbital electron populations 1.22264 0.95523 1.02358 1.03133 1.21359 0.94318 0.76686 1.03282 1.47345 1.70916 1.11125 0.97167 1.45071 1.66276 1.11158 1.03302 0.71665 1.25586 0.89605 0.86384 0.92607 1.71785 1.26703 1.22634 1.08692 1.20737 0.93357 0.82330 0.88792 1.72358 1.30072 1.33647 0.94951 1.21841 0.97771 0.93228 0.91362 1.20595 0.92623 0.96409 0.95519 1.21600 0.99554 0.98472 0.97529 1.21577 1.00479 0.96295 0.98754 1.19141 0.96771 0.92761 0.91784 1.21312 0.95378 1.23025 1.14169 0.92391 1.25012 0.95815 0.96400 0.97453 1.69987 1.26367 1.28760 1.28771 0.86636 0.84338 0.77851 0.79778 1.19861 1.21232 1.21268 0.90907 0.93014 0.91151 0.90905 0.88316 0.76031 0.92185 0.93288 0.95478 0.92665 0.94411 0.94384 0.93040 0.94246 0.96761 0.96791 0.93370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.65 10.24 37.15 0.38 -1.27 16 2 C 0.17 1.56 7.22 -4.05 -0.03 1.53 16 3 N -0.45 -5.44 3.76 -61.94 -0.23 -5.67 16 4 N -0.53 -4.15 7.39 29.73 0.22 -3.93 16 5 H 0.44 1.49 8.96 -182.29 -1.63 -0.14 16 6 C 0.36 3.25 13.06 -89.69 -1.17 2.07 16 7 N -0.56 -8.80 10.12 -14.66 -0.15 -8.95 16 8 C 0.51 8.63 8.50 -320.86 -2.73 5.91 16 9 N -0.58 -11.23 9.04 -61.93 -0.56 -11.79 16 10 C 0.09 1.93 5.28 -4.04 -0.02 1.91 16 11 C -0.05 -1.19 0.60 -154.51 -0.09 -1.28 16 12 C -0.11 -2.59 8.06 37.16 0.30 -2.29 16 13 C -0.11 -2.54 8.06 37.15 0.30 -2.24 16 14 C 0.03 0.92 4.04 -27.88 -0.11 0.81 16 15 C -0.50 -14.70 7.65 -34.44 -0.26 -14.97 16 16 H 0.06 1.67 5.68 -52.48 -0.30 1.37 16 17 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 18 N -0.90 -28.19 13.29 55.43 0.74 -27.46 16 19 Si 0.89 22.63 29.54 -169.99 -5.02 17.61 16 20 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 22 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 23 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 24 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.07 0.52 8.14 -51.92 -0.42 0.10 16 26 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.22 0.74 8.06 -52.49 -0.42 0.32 16 29 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 30 H 0.05 1.12 7.02 -51.93 -0.36 0.75 16 31 H 0.03 0.57 7.60 -51.93 -0.39 0.17 16 32 H 0.05 1.30 6.62 -51.92 -0.34 0.95 16 33 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.05 1.19 6.62 -51.92 -0.34 0.85 16 36 H 0.04 0.81 7.60 -51.93 -0.39 0.42 16 37 H 0.01 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 320.51 15.07 4.83 4.83 Total: -1.00 -37.52 320.51 -11.27 -48.79 By element: Atomic # 1 Polarization: 2.46 SS G_CDS: -7.56 Total: -5.10 kcal Atomic # 6 Polarization: -4.80 SS G_CDS: -3.54 Total: -8.34 kcal Atomic # 7 Polarization: -57.81 SS G_CDS: 0.02 Total: -57.79 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.61 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -37.52 -11.27 -48.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120848619.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.269 kcal (2) G-P(sol) polarization free energy of solvation -37.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds