Wall clock time and date at job start Sun Mar 29 2020 23:51:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46500 * 109.46970 * 2 1 4 4 N 1.40508 * 127.07186 * 265.30306 * 3 2 1 5 5 H 0.96996 * 126.52232 * 0.03063 * 4 3 2 6 6 C 1.35968 * 106.96576 * 180.15150 * 4 3 2 7 7 N 1.30303 * 109.62124 * 359.58006 * 6 4 3 8 8 C 1.35732 * 110.02666 * 0.26832 * 7 6 4 9 9 N 1.30764 * 126.23547 * 180.02562 * 8 7 6 10 10 C 1.46502 * 119.99678 * 359.97438 * 9 8 7 11 11 C 1.53001 * 109.47042 * 120.00236 * 10 9 8 12 12 C 1.53001 * 109.46782 * 299.99509 * 11 10 9 13 13 C 1.52992 * 109.47096 * 59.99655 * 11 10 9 14 14 C 1.53004 * 109.46755 * 180.02562 * 11 10 9 15 15 C 1.50702 * 109.46718 * 179.97438 * 14 11 10 16 16 H 1.08006 * 120.00035 * 359.97438 * 15 14 11 17 17 C 1.37874 * 119.99902 * 179.97438 * 15 14 11 18 18 N 1.31515 * 120.00355 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00040 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47076 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47421 * 119.99597 * 19 17 15 22 22 H 1.48503 * 109.46847 * 239.99893 * 19 17 15 23 23 H 1.09000 * 109.47666 * 300.00179 * 1 2 3 24 24 H 1.08998 * 109.47353 * 60.00113 * 1 2 3 25 25 H 1.09007 * 109.46906 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47358 * 240.00531 * 2 1 3 27 27 H 1.08998 * 109.47353 * 119.99887 * 2 1 3 28 28 H 1.08002 * 125.19332 * 179.85146 * 6 4 3 29 29 H 1.08997 * 109.46924 * 239.99973 * 10 9 8 30 30 H 1.08996 * 109.47471 * 0.02562 * 10 9 8 31 31 H 1.09000 * 109.47407 * 60.00505 * 12 11 10 32 32 H 1.09008 * 109.46872 * 179.97438 * 12 11 10 33 33 H 1.08996 * 109.47505 * 299.99878 * 12 11 10 34 34 H 1.09001 * 109.46979 * 60.00551 * 13 11 10 35 35 H 1.09008 * 109.47129 * 180.02562 * 13 11 10 36 36 H 1.09000 * 109.47286 * 299.99613 * 13 11 10 37 37 H 1.09001 * 109.46883 * 299.99151 * 14 11 10 38 38 H 1.08994 * 109.47131 * 60.00058 * 14 11 10 39 39 H 0.96995 * 120.00684 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 7 2.3871 2.1492 -1.1173 5 1 2.3672 1.8657 -2.0447 6 6 2.7798 3.3646 -0.6512 7 7 2.6690 3.3921 0.6468 8 6 2.2054 2.1993 1.0991 9 7 1.9768 1.8817 2.3469 10 6 2.2241 2.8602 3.4088 11 6 0.9211 3.1355 4.1621 12 6 -0.1223 3.6904 3.1902 13 6 0.4034 1.8342 4.7780 14 6 1.1792 4.1579 5.2707 15 6 -0.1043 4.4295 6.0122 16 1 -1.0133 3.9238 5.7216 17 6 -0.1182 5.3236 7.0618 18 7 0.9888 5.9390 7.4161 19 14 -1.7090 5.6597 7.9814 20 1 -2.8028 4.8464 7.3920 21 1 -1.5394 5.2995 9.4120 22 1 -2.0496 7.1009 7.8708 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5137 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.1262 4.1839 -1.2637 29 1 2.9674 2.4650 4.1011 30 1 2.5925 3.7874 2.9700 31 1 -0.3063 2.9624 2.4001 32 1 -1.0508 3.8861 3.7268 33 1 0.2465 4.6174 2.7515 34 1 1.1467 1.4390 5.4703 35 1 -0.5252 2.0303 5.3142 36 1 0.2194 1.1063 3.9878 37 1 1.9227 3.7630 5.9632 38 1 1.5478 5.0848 4.8315 39 1 0.9792 6.5676 8.1547 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001120848619.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:51:56 Heat of formation + Delta-G solvation = 79.850288 kcal Electronic energy + Delta-G solvation = -18991.485987 eV Core-core repulsion = 16163.793908 eV Total energy + Delta-G solvation = -2827.692079 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.36459 -38.72511 -35.69827 -35.39690 -34.16021 -31.94674 -30.40595 -28.89126 -27.90314 -26.95422 -24.99896 -24.43949 -23.14456 -20.95780 -19.49175 -18.93554 -18.30647 -16.83386 -16.73586 -16.36320 -16.06736 -15.48436 -15.31932 -15.05047 -14.72647 -14.32092 -13.90855 -13.77417 -13.57356 -12.97201 -12.86986 -12.67455 -12.59416 -12.44464 -12.28822 -12.16870 -11.99633 -11.64807 -11.42086 -11.34147 -10.97188 -10.94359 -10.72175 -10.49620 -9.87581 -8.19663 -8.08127 -6.19558 0.71311 0.79247 1.40375 1.41289 1.54569 2.44891 2.54091 3.03016 3.20951 3.75357 3.98635 4.01544 4.23014 4.28947 4.37179 4.43345 4.46406 4.64020 4.79047 4.88359 4.95384 4.98627 5.10066 5.12277 5.17156 5.20665 5.29365 5.43993 5.47306 5.51423 5.55264 5.64092 5.86389 5.90732 5.94066 6.37029 6.77439 6.94036 7.19718 7.47023 7.56517 9.01495 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.034797 B = 0.004860 C = 0.004592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.484426 B = 5759.986147 C = 6095.707978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.158 3.842 3 N -0.450 5.450 4 N -0.497 5.497 5 H 0.464 0.536 6 C 0.382 3.618 7 N -0.636 5.636 8 C 0.516 3.484 9 N -0.621 5.621 10 C 0.109 3.891 11 C -0.048 4.048 12 C -0.094 4.094 13 C -0.100 4.100 14 C 0.043 3.957 15 C -0.514 4.514 16 H 0.063 0.937 17 C -0.005 4.005 18 N -0.938 5.938 19 Si 0.961 3.039 20 H -0.262 1.262 21 H -0.279 1.279 22 H -0.279 1.279 23 H 0.032 0.968 24 H 0.060 0.940 25 H 0.093 0.907 26 H 0.117 0.883 27 H 0.083 0.917 28 H 0.282 0.718 29 H 0.038 0.962 30 H 0.028 0.972 31 H 0.040 0.960 32 H 0.043 0.957 33 H 0.025 0.975 34 H 0.030 0.970 35 H 0.040 0.960 36 H 0.056 0.944 37 H -0.017 1.017 38 H -0.019 1.019 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.786 -11.027 -24.520 26.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.038 3.962 3 N -0.262 5.262 4 N -0.228 5.228 5 H 0.315 0.685 6 C 0.086 3.914 7 N -0.374 5.374 8 C 0.150 3.850 9 N -0.361 5.361 10 C -0.022 4.022 11 C -0.049 4.049 12 C -0.151 4.151 13 C -0.157 4.157 14 C 0.005 3.995 15 C -0.552 4.552 16 H 0.081 0.919 17 C -0.202 4.202 18 N -0.580 5.580 19 Si 0.786 3.214 20 H -0.186 1.186 21 H -0.205 1.205 22 H -0.205 1.205 23 H 0.051 0.949 24 H 0.079 0.921 25 H 0.111 0.889 26 H 0.135 0.865 27 H 0.102 0.898 28 H 0.297 0.703 29 H 0.056 0.944 30 H 0.046 0.954 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.044 0.956 34 H 0.049 0.951 35 H 0.059 0.941 36 H 0.075 0.925 37 H 0.002 0.998 38 H -0.001 1.001 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.616 -11.311 -23.258 25.913 hybrid contribution -0.306 0.623 -0.055 0.697 sum 1.309 -10.688 -23.313 25.679 Atomic orbital electron populations 1.22182 0.95356 1.03405 1.01516 1.21628 0.94356 0.75438 1.04767 1.47655 1.69323 1.11761 0.97500 1.45253 1.63849 1.10286 1.03462 0.68535 1.26744 0.86067 0.87298 0.91261 1.71773 1.30669 1.22888 1.12046 1.20990 0.91372 0.83451 0.89211 1.72271 1.35538 1.32576 0.95696 1.21343 0.95748 0.93000 0.92107 1.20476 0.94296 0.95579 0.94573 1.21367 0.98328 0.98109 0.97309 1.21418 0.99429 0.96002 0.98841 1.18988 0.95576 0.92448 0.92482 1.21599 0.95813 1.23215 1.14553 0.91886 1.25970 0.99715 0.96035 0.98438 1.70136 1.28940 1.29408 1.29468 0.85450 0.79687 0.77971 0.78268 1.18601 1.20475 1.20495 0.94874 0.92071 0.88858 0.86467 0.89833 0.70295 0.94404 0.95394 0.94063 0.93792 0.95623 0.95066 0.94120 0.92491 0.99826 1.00093 0.93069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.76 10.24 71.98 0.74 -2.02 16 2 C 0.16 2.56 7.22 86.38 0.62 3.18 16 3 N -0.45 -9.76 3.76 -349.88 -1.32 -11.07 16 4 N -0.50 -5.70 7.39 -59.84 -0.44 -6.14 16 5 H 0.46 0.58 8.96 -213.06 -1.91 -1.33 16 6 C 0.38 5.58 13.06 180.02 2.35 7.93 16 7 N -0.64 -19.28 10.12 -200.31 -2.03 -21.31 16 8 C 0.52 17.14 8.50 260.80 2.22 19.36 16 9 N -0.62 -24.96 9.04 -349.85 -3.16 -28.12 16 10 C 0.11 5.10 5.28 86.38 0.46 5.55 16 11 C -0.05 -2.38 0.60 -52.18 -0.03 -2.42 16 12 C -0.09 -4.37 8.06 71.98 0.58 -3.79 16 13 C -0.10 -4.59 8.06 71.98 0.58 -4.01 16 14 C 0.04 2.52 4.04 29.85 0.12 2.65 16 15 C -0.51 -31.13 7.65 25.60 0.20 -30.94 16 16 H 0.06 3.69 5.68 -2.91 -0.02 3.68 16 17 C -0.01 -0.31 5.46 84.65 0.46 0.15 16 18 N -0.94 -60.68 13.29 21.45 0.28 -60.40 16 19 Si 0.96 46.99 29.54 68.60 2.03 49.02 16 20 H -0.26 -12.21 7.11 99.48 0.71 -11.51 16 21 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 22 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 23 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 24 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 25 H 0.09 1.12 8.14 -2.38 -0.02 1.10 16 26 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.28 0.34 8.06 -2.91 -0.02 0.32 16 29 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.03 1.36 7.02 -2.39 -0.02 1.35 16 31 H 0.04 1.77 7.60 -2.39 -0.02 1.76 16 32 H 0.04 2.09 6.62 -2.38 -0.02 2.08 16 33 H 0.02 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.04 1.91 6.62 -2.38 -0.02 1.90 16 36 H 0.06 2.40 7.60 -2.39 -0.02 2.39 16 37 H -0.02 -1.07 8.14 -2.39 -0.02 -1.09 16 38 H -0.02 -1.25 8.14 -2.39 -0.02 -1.27 16 39 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 Total: -1.00 -87.32 320.51 2.78 -84.54 By element: Atomic # 1 Polarization: -1.28 SS G_CDS: -0.88 Total: -2.16 kcal Atomic # 6 Polarization: -12.66 SS G_CDS: 8.29 Total: -4.36 kcal Atomic # 7 Polarization: -120.37 SS G_CDS: -6.66 Total: -127.04 kcal Atomic # 14 Polarization: 46.99 SS G_CDS: 2.03 Total: 49.02 kcal Total: -87.32 2.78 -84.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120848619.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.388 kcal (2) G-P(sol) polarization free energy of solvation -87.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds