Wall clock time and date at job start Sun Mar 29 2020 23:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46894 * 111.00447 * 2 1 4 4 C 1.50703 * 109.46982 * 66.04560 * 3 2 1 5 5 H 1.07998 * 119.99979 * 359.97438 * 4 3 2 6 6 C 1.37881 * 119.99875 * 180.02562 * 4 3 2 7 7 N 1.31517 * 119.99717 * 0.02562 * 6 4 3 8 8 Si 1.86794 * 120.00097 * 179.97438 * 6 4 3 9 9 H 1.48506 * 109.47010 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47145 * 119.99833 * 8 6 4 11 11 H 1.48501 * 109.47334 * 240.00049 * 8 6 4 12 12 C 1.46902 * 110.99829 * 236.04253 * 2 1 3 13 13 H 1.08997 * 109.69761 * 64.47408 * 12 2 1 14 14 C 1.53345 * 109.67409 * 303.95729 * 12 2 1 15 15 C 1.52927 * 108.80744 * 172.81654 * 14 12 2 16 16 N 1.45754 * 110.48549 * 50.67087 * 15 14 12 17 17 C 1.46498 * 117.94105 * 160.92462 * 16 15 14 18 18 C 1.52998 * 117.50228 * 10.00437 * 17 16 15 19 19 C 1.53003 * 117.50121 * 301.33814 * 17 16 15 20 20 C 1.33349 * 124.10726 * 340.94836 * 16 15 14 21 21 O 1.21285 * 118.24206 * 182.17712 * 20 16 15 22 22 C 1.50169 * 123.51093 * 2.20043 * 20 16 15 23 23 H 1.08994 * 109.47422 * 183.95551 * 1 2 3 24 24 H 1.09004 * 109.47131 * 303.96033 * 1 2 3 25 25 H 1.08999 * 109.46775 * 63.95160 * 1 2 3 26 26 H 1.08997 * 109.47407 * 186.04283 * 3 2 1 27 27 H 1.08997 * 109.47043 * 306.04385 * 3 2 1 28 28 H 0.97003 * 119.99177 * 180.02562 * 7 6 4 29 29 H 1.09003 * 109.60250 * 52.97981 * 14 12 2 30 30 H 1.09003 * 109.60514 * 292.65524 * 14 12 2 31 31 H 1.09000 * 109.29801 * 170.98254 * 15 14 12 32 32 H 1.08992 * 109.29832 * 290.36035 * 15 14 12 33 33 H 1.09003 * 115.54939 * 155.67268 * 17 16 15 34 34 H 1.08995 * 117.49837 * 359.97438 * 18 17 16 35 35 H 1.08997 * 117.50129 * 145.02134 * 18 17 16 36 36 H 1.08997 * 117.50155 * 214.97634 * 19 17 16 37 37 H 1.08996 * 117.49859 * 0.02562 * 19 17 16 38 38 H 1.09004 * 109.40281 * 102.54391 * 22 20 16 39 39 H 1.09001 * 109.40451 * 222.37452 * 22 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6370 2.0470 1.2985 5 1 1.0740 1.5115 2.0485 6 6 2.0270 3.3494 1.5285 7 7 2.7113 4.0021 0.6145 8 14 1.5820 4.1872 3.1376 9 1 0.8138 3.2449 3.9904 10 1 2.8234 4.5947 3.8433 11 1 0.7545 5.3882 2.8582 12 6 1.9954 -0.7661 -1.1376 13 1 1.7142 -0.2781 -2.0707 14 6 1.4274 -2.1901 -1.1081 15 6 1.8414 -2.9127 -2.3907 16 7 3.2770 -2.7848 -2.6076 17 6 3.9215 -3.7364 -3.5160 18 6 3.0138 -4.6430 -4.3496 19 6 3.8082 -5.2242 -3.1772 20 6 4.0406 -1.8563 -2.0306 21 8 5.2184 -1.8219 -2.3181 22 6 3.5204 -0.8512 -1.0435 23 1 -0.3634 -1.0251 0.0709 24 1 -0.3633 0.5741 0.8524 25 1 -0.3633 0.4513 -0.9233 26 1 3.0798 1.3443 -0.1082 27 1 1.5613 1.9272 -0.8309 28 1 2.9859 4.9182 0.7766 29 1 0.3399 -2.1489 -1.0463 30 1 1.8228 -2.7238 -0.2438 31 1 1.5819 -3.9682 -2.3094 32 1 1.3091 -2.4782 -3.2368 33 1 4.8491 -3.3940 -3.9748 34 1 1.9371 -4.5318 -4.2219 35 1 3.3443 -4.8974 -5.3567 36 1 4.6610 -5.8606 -3.4136 37 1 3.2538 -5.4950 -2.2787 38 1 3.8019 -1.1548 -0.0352 39 1 3.9511 0.1262 -1.2609 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172008802.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:28:22 Heat of formation + Delta-G solvation = 1.560939 kcal Electronic energy + Delta-G solvation = -19100.394772 eV Core-core repulsion = 16237.015061 eV Total energy + Delta-G solvation = -2863.379711 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.57858 -37.55005 -37.21856 -34.57796 -32.60109 -30.92245 -29.76727 -27.30739 -25.17210 -24.30305 -22.70192 -22.16853 -21.61943 -19.89746 -18.47695 -17.15762 -16.51815 -16.17097 -15.48407 -15.05675 -14.55230 -14.39638 -14.13213 -14.07352 -13.58230 -13.01872 -12.98033 -12.53077 -11.97503 -11.95033 -11.67881 -11.48447 -11.23499 -11.15647 -11.08179 -10.84473 -10.66192 -10.63860 -10.56207 -10.21883 -9.77389 -9.51012 -9.18986 -8.51337 -8.44920 -7.34584 -6.04431 -4.05928 2.77864 2.92580 3.30264 3.37969 3.42068 3.71353 4.37551 4.52246 4.60460 4.73217 4.76414 4.83354 4.86476 5.04960 5.29719 5.34229 5.38662 5.48351 5.56728 5.61827 5.69471 5.83290 5.86329 5.94720 6.01607 6.08620 6.23230 6.34878 6.43467 6.50709 6.69482 7.23615 7.28878 7.53342 7.76072 8.02483 8.12885 8.32029 8.49132 9.01576 9.58422 11.06482 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.041985 B = 0.004751 C = 0.004432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.741444 B = 5891.906206 C = 6316.658258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.534 5.534 3 C 0.187 3.813 4 C -0.508 4.508 5 H 0.064 0.936 6 C 0.055 3.945 7 N -0.897 5.897 8 Si 0.897 3.103 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.285 1.285 12 C 0.083 3.917 13 H 0.037 0.963 14 C -0.132 4.132 15 C 0.114 3.886 16 N -0.580 5.580 17 C 0.077 3.923 18 C -0.189 4.189 19 C -0.193 4.193 20 C 0.528 3.472 21 O -0.555 6.555 22 C -0.124 4.124 23 H 0.049 0.951 24 H 0.076 0.924 25 H 0.011 0.989 26 H 0.036 0.964 27 H -0.009 1.009 28 H 0.261 0.739 29 H 0.088 0.912 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.135 0.865 34 H 0.099 0.901 35 H 0.102 0.898 36 H 0.100 0.900 37 H 0.096 0.904 38 H 0.111 0.889 39 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.249 -16.158 -7.689 18.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.259 5.259 3 C 0.063 3.937 4 C -0.547 4.547 5 H 0.082 0.918 6 C -0.146 4.146 7 N -0.537 5.537 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.212 1.212 12 C -0.026 4.026 13 H 0.055 0.945 14 C -0.170 4.170 15 C -0.009 4.009 16 N -0.312 5.312 17 C -0.028 4.028 18 C -0.226 4.226 19 C -0.232 4.232 20 C 0.317 3.683 21 O -0.434 6.434 22 C -0.164 4.164 23 H 0.068 0.932 24 H 0.095 0.905 25 H 0.030 0.970 26 H 0.054 0.946 27 H 0.009 0.991 28 H 0.071 0.929 29 H 0.106 0.894 30 H 0.097 0.903 31 H 0.092 0.908 32 H 0.082 0.918 33 H 0.152 0.848 34 H 0.118 0.882 35 H 0.120 0.880 36 H 0.118 0.882 37 H 0.114 0.886 38 H 0.129 0.871 39 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -2.411 -16.129 -7.401 17.909 hybrid contribution -0.584 0.957 0.062 1.123 sum -2.995 -15.172 -7.339 17.118 Atomic orbital electron populations 1.22280 0.88714 0.99661 1.00768 1.62211 1.07011 1.17984 1.38675 1.19829 0.95841 0.81305 0.96771 1.21175 1.34911 0.96911 1.01665 0.91768 1.24992 0.95280 0.97374 0.96967 1.69970 1.38299 1.11434 1.33967 0.86450 0.78173 0.79305 0.83538 1.19667 1.20987 1.21154 1.21573 0.93379 0.93608 0.94086 0.94474 1.22058 1.02211 0.96012 0.96695 1.21437 0.79980 1.00885 0.98576 1.46863 1.08428 1.30946 1.44994 1.21671 0.99014 0.86080 0.96057 1.23372 0.98723 1.03884 0.96665 1.23368 1.03233 0.97079 0.99535 1.20410 0.86015 0.80796 0.81037 1.90675 1.16924 1.73134 1.62631 1.21751 0.96406 0.98881 0.99349 0.93221 0.90491 0.97013 0.94615 0.99108 0.92931 0.89408 0.90304 0.90819 0.91774 0.84782 0.88226 0.88001 0.88156 0.88581 0.87114 0.87519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 8.95 60.06 0.54 1.15 16 2 N -0.53 -10.79 4.63 -236.10 -1.09 -11.88 16 3 C 0.19 4.72 4.55 -4.98 -0.02 4.69 16 4 C -0.51 -13.94 8.46 -34.44 -0.29 -14.23 16 5 H 0.06 1.74 7.12 -52.49 -0.37 1.37 16 6 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 7 N -0.90 -26.48 13.29 55.43 0.74 -25.74 16 8 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 9 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 12 C 0.08 1.39 2.00 -67.52 -0.14 1.26 16 13 H 0.04 0.65 8.13 -51.93 -0.42 0.23 16 14 C -0.13 -1.67 5.16 -26.59 -0.14 -1.80 16 15 C 0.11 1.25 5.20 -4.48 -0.02 1.23 16 16 N -0.58 -7.90 3.15 -167.37 -0.53 -8.43 16 17 C 0.08 0.91 6.08 -67.93 -0.41 0.50 16 18 C -0.19 -1.61 9.70 -26.69 -0.26 -1.87 16 19 C -0.19 -1.80 10.04 -26.69 -0.27 -2.07 16 20 C 0.53 9.00 7.47 -11.88 -0.09 8.91 16 21 O -0.56 -11.21 16.29 5.55 0.09 -11.12 16 22 C -0.12 -2.19 4.79 -28.12 -0.13 -2.32 16 23 H 0.05 0.72 6.10 -51.93 -0.32 0.40 16 24 H 0.08 1.51 6.76 -51.93 -0.35 1.16 16 25 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 26 H 0.04 0.96 6.14 -51.93 -0.32 0.64 16 27 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 28 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 29 H 0.09 1.00 6.00 -51.93 -0.31 0.69 16 30 H 0.08 1.02 8.13 -51.93 -0.42 0.60 16 31 H 0.07 0.65 6.48 -51.93 -0.34 0.31 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.13 1.77 7.37 -51.93 -0.38 1.38 16 34 H 0.10 0.77 6.60 -51.93 -0.34 0.43 16 35 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.10 0.89 7.80 -51.93 -0.40 0.48 16 38 H 0.11 1.98 8.14 -51.93 -0.42 1.56 16 39 H 0.11 2.10 6.86 -51.93 -0.36 1.74 16 LS Contribution 306.69 15.07 4.62 4.62 Total: -1.00 -31.39 306.69 -8.53 -39.93 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: -6.01 Total: -0.66 kcal Atomic # 6 Polarization: -1.77 SS G_CDS: -1.33 Total: -3.11 kcal Atomic # 7 Polarization: -45.17 SS G_CDS: -0.88 Total: -46.05 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: 0.09 Total: -11.12 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.39 -8.53 -39.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172008802.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.487 kcal (2) G-P(sol) polarization free energy of solvation -31.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds