Wall clock time and date at job start Sun Mar 29 2020 23:48:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.47019 * 2 1 4 4 C 1.52998 * 109.46894 * 240.00047 * 2 1 3 5 5 C 1.53004 * 109.46799 * 175.00317 * 4 2 1 6 6 C 1.50700 * 109.46864 * 180.02562 * 5 4 2 7 7 H 1.08003 * 119.99999 * 359.97438 * 6 5 4 8 8 C 1.37877 * 119.99839 * 179.97438 * 6 5 4 9 9 N 1.31515 * 119.99985 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 120.00132 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47454 * 59.99421 * 10 8 6 12 12 H 1.48494 * 109.47488 * 180.02562 * 10 8 6 13 13 H 1.48507 * 109.46862 * 299.99885 * 10 8 6 14 14 N 1.46906 * 109.46885 * 120.00326 * 2 1 3 15 15 C 1.46905 * 110.99511 * 274.99656 * 14 2 1 16 16 C 1.53001 * 109.46714 * 180.02562 * 15 14 2 17 17 C 1.52999 * 109.46942 * 180.02562 * 16 15 14 18 18 N 1.46500 * 109.47084 * 179.97438 * 17 16 15 19 19 C 1.34429 * 126.81895 * 124.99739 * 18 17 16 20 20 N 1.30837 * 108.07952 * 180.02562 * 19 18 17 21 21 C 1.33246 * 109.82318 * 359.97438 * 20 19 18 22 22 N 1.30712 * 108.94935 * 0.27015 * 21 20 19 23 23 H 1.09003 * 109.47431 * 60.00086 * 1 2 3 24 24 H 1.09006 * 109.47294 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47224 * 299.99938 * 1 2 3 26 26 H 1.09005 * 109.47432 * 295.00025 * 4 2 1 27 27 H 1.08996 * 109.47260 * 55.00298 * 4 2 1 28 28 H 1.08997 * 109.46934 * 299.99388 * 5 4 2 29 29 H 1.08996 * 109.47230 * 59.99962 * 5 4 2 30 30 H 0.96999 * 119.99845 * 180.02562 * 9 8 6 31 31 H 1.00894 * 110.99797 * 151.05113 * 14 2 1 32 32 H 1.09007 * 109.46876 * 60.00835 * 15 14 2 33 33 H 1.08996 * 109.47148 * 300.00020 * 15 14 2 34 34 H 1.09002 * 109.47043 * 60.00030 * 16 15 14 35 35 H 1.08996 * 109.47276 * 299.99876 * 16 15 14 36 36 H 1.09002 * 109.47279 * 60.00111 * 17 16 15 37 37 H 1.08995 * 109.47424 * 300.00289 * 17 16 15 38 38 H 1.08000 * 125.96340 * 359.97438 * 19 18 17 39 39 H 1.08002 * 125.52127 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5648 -0.6133 -1.3136 6 6 4.0671 -1.3232 -2.5444 7 1 3.3686 -1.8036 -3.2136 8 6 5.4183 -1.3593 -2.8163 9 7 6.2688 -0.7738 -2.0017 10 14 6.0409 -2.2386 -4.3423 11 1 5.4483 -1.6119 -5.5512 12 1 7.5208 -2.1340 -4.4048 13 1 5.6483 -3.6696 -4.2837 14 7 2.0197 -0.6926 1.1995 15 6 2.0825 0.2226 2.3469 16 6 2.5962 -0.5330 3.5742 17 6 2.6610 0.4200 4.7694 18 7 3.1523 -0.3036 5.9447 19 6 4.2050 0.0272 6.7125 20 7 4.3152 -0.8696 7.6587 21 6 3.3548 -1.7841 7.5287 22 7 2.6205 -1.4836 6.4899 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.7516 -1.7716 -1.2056 27 1 1.6054 -0.2617 -2.1369 28 1 3.8532 0.4369 -1.3573 29 1 3.9994 -1.0729 -0.4259 30 1 7.2194 -0.7989 -2.1932 31 1 2.9173 -1.1205 1.0288 32 1 1.0870 0.6162 2.5526 33 1 2.7589 1.0461 2.1182 34 1 3.5916 -0.9264 3.3682 35 1 1.9201 -1.3567 3.8030 36 1 1.6653 0.8130 4.9752 37 1 3.3368 1.2440 4.5409 38 1 4.8482 0.8834 6.5723 39 1 3.2099 -2.6380 8.1739 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172487936.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:48:36 Heat of formation + Delta-G solvation = 48.020754 kcal Electronic energy + Delta-G solvation = -17861.148716 eV Core-core repulsion = 15032.076405 eV Total energy + Delta-G solvation = -2829.072311 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.95503 -38.87460 -36.52331 -35.16339 -33.52322 -32.15933 -31.42417 -30.04362 -27.14997 -26.09907 -23.49044 -23.00498 -22.77896 -22.02984 -20.96276 -18.54267 -18.23624 -17.03446 -16.75902 -16.55271 -16.39285 -15.80004 -15.41320 -14.99176 -14.73573 -14.40470 -14.24955 -13.76434 -13.57453 -13.29773 -13.12291 -12.88897 -12.82454 -12.57074 -12.43190 -12.31795 -11.91987 -11.82133 -11.52997 -11.32441 -10.99415 -10.95470 -10.78522 -10.60505 -10.55296 -9.32133 -8.21864 -6.32052 0.71860 1.38881 1.41157 1.44223 1.49055 2.02556 2.39641 3.10850 3.16661 3.54260 3.64072 3.87231 4.04616 4.10327 4.18433 4.25136 4.36636 4.46144 4.50366 4.54522 4.67278 4.78055 4.95234 5.02016 5.05666 5.08437 5.20297 5.23377 5.31188 5.45046 5.49808 5.52979 5.69991 5.83005 5.93496 6.23221 6.26417 6.41653 6.84076 7.13449 7.37065 8.89155 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.020809 B = 0.003799 C = 0.003347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.248376 B = 7368.244236 C = 8362.843253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.087 3.913 3 H 0.035 0.965 4 C -0.103 4.103 5 C 0.028 3.972 6 C -0.546 4.546 7 H 0.057 0.943 8 C 0.003 3.997 9 N -0.930 5.930 10 Si 0.961 3.039 11 H -0.267 1.267 12 H -0.283 1.283 13 H -0.269 1.269 14 N -0.696 5.696 15 C 0.066 3.934 16 C -0.117 4.117 17 C 0.132 3.868 18 N -0.382 5.382 19 C 0.257 3.743 20 N -0.581 5.581 21 C 0.188 3.812 22 N -0.353 5.353 23 H 0.062 0.938 24 H 0.053 0.947 25 H 0.063 0.937 26 H 0.051 0.949 27 H 0.057 0.943 28 H -0.013 1.013 29 H -0.002 1.002 30 H 0.263 0.737 31 H 0.337 0.663 32 H 0.089 0.911 33 H 0.034 0.966 34 H 0.048 0.952 35 H 0.065 0.935 36 H 0.105 0.895 37 H 0.134 0.866 38 H 0.258 0.742 39 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.050 5.058 14.704 17.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.022 4.022 3 H 0.053 0.947 4 C -0.141 4.141 5 C -0.009 4.009 6 C -0.584 4.584 7 H 0.075 0.925 8 C -0.195 4.195 9 N -0.570 5.570 10 Si 0.785 3.215 11 H -0.192 1.192 12 H -0.208 1.208 13 H -0.194 1.194 14 N -0.328 5.328 15 C -0.064 4.064 16 C -0.155 4.155 17 C 0.011 3.989 18 N -0.172 5.172 19 C -0.039 4.039 20 N -0.309 5.309 21 C -0.115 4.115 22 N -0.181 5.181 23 H 0.081 0.919 24 H 0.072 0.928 25 H 0.082 0.918 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.005 0.995 29 H 0.016 0.984 30 H 0.072 0.928 31 H 0.156 0.844 32 H 0.107 0.893 33 H 0.052 0.948 34 H 0.067 0.933 35 H 0.084 0.916 36 H 0.123 0.877 37 H 0.152 0.848 38 H 0.274 0.726 39 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -8.904 4.476 14.825 17.863 hybrid contribution 1.588 0.110 -1.147 1.962 sum -7.316 4.586 13.678 16.175 Atomic orbital electron populations 1.21719 0.93199 1.01989 1.01712 1.21537 0.96376 0.95138 0.89163 0.94741 1.21660 0.96203 0.99725 0.96545 1.18990 0.92078 0.94550 0.95274 1.21680 0.92556 1.34715 1.09414 0.92524 1.25916 0.97338 0.96290 0.99975 1.70065 1.02743 1.45281 1.38958 0.85566 0.77058 0.79233 0.79602 1.19214 1.20788 1.19404 1.60661 1.33737 1.33361 1.05084 1.21902 1.01357 0.93593 0.89571 1.21640 1.01353 0.98973 0.93581 1.22013 1.03316 0.93525 0.80062 1.50729 1.23291 1.19033 1.24153 1.26913 0.90008 0.99819 0.87193 1.70552 1.26829 1.06577 1.26989 1.26551 0.89943 0.99862 0.95122 1.77993 1.24810 1.01164 1.14128 0.91903 0.92770 0.91838 0.93037 0.92421 0.99483 0.98375 0.92820 0.84408 0.89315 0.94770 0.93327 0.91593 0.87691 0.84772 0.72603 0.74568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.35 9.41 71.98 0.68 -2.67 16 2 C 0.09 2.84 2.65 44.91 0.12 2.96 16 3 H 0.03 1.15 7.80 -2.39 -0.02 1.13 16 4 C -0.10 -4.18 4.74 30.59 0.15 -4.04 16 5 C 0.03 1.45 4.80 29.85 0.14 1.59 16 6 C -0.55 -30.94 9.11 25.60 0.23 -30.71 16 7 H 0.06 3.11 7.74 -2.91 -0.02 3.08 16 8 C 0.00 0.16 5.46 84.65 0.46 0.62 16 9 N -0.93 -55.81 13.29 21.45 0.28 -55.53 16 10 Si 0.96 44.15 29.54 68.60 2.03 46.18 16 11 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 12 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 13 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 14 N -0.70 -22.02 6.31 -491.55 -3.10 -25.12 16 15 C 0.07 1.55 5.48 86.30 0.47 2.02 16 16 C -0.12 -2.60 5.68 30.59 0.17 -2.43 16 17 C 0.13 2.03 6.55 86.38 0.57 2.59 16 18 N -0.38 -7.78 3.69 -352.06 -1.30 -9.08 16 19 C 0.26 4.59 12.63 180.36 2.28 6.86 16 20 N -0.58 -13.38 11.19 -203.99 -2.28 -15.67 16 21 C 0.19 4.21 13.03 180.76 2.36 6.57 16 22 N -0.35 -8.93 12.56 -61.24 -0.77 -9.70 16 23 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 24 H 0.05 1.46 8.14 -2.38 -0.02 1.44 16 25 H 0.06 1.41 7.45 -2.39 -0.02 1.39 16 26 H 0.05 2.12 8.14 -2.38 -0.02 2.11 16 27 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 28 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 29 H 0.00 -0.11 6.43 -2.39 -0.02 -0.12 16 30 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 31 H 0.34 12.50 6.47 -89.70 -0.58 11.92 16 32 H 0.09 1.77 7.44 -2.38 -0.02 1.76 16 33 H 0.03 0.80 8.05 -2.39 -0.02 0.78 16 34 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.13 1.21 8.09 -2.39 -0.02 1.19 16 38 H 0.26 1.97 8.06 -2.91 -0.02 1.94 16 39 H 0.24 3.59 8.06 -2.91 -0.02 3.57 16 Total: -1.00 -71.19 326.48 2.92 -68.27 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: 0.44 Total: 17.27 kcal Atomic # 6 Polarization: -24.25 SS G_CDS: 7.63 Total: -16.62 kcal Atomic # 7 Polarization: -107.92 SS G_CDS: -7.17 Total: -115.09 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -71.19 2.92 -68.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172487936.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.287 kcal (2) G-P(sol) polarization free energy of solvation -71.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds