Wall clock time and date at job start Sun Mar 29 2020 23:48:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09003 * 109.47475 * 2 1 4 4 C 1.53007 * 109.47124 * 120.00036 * 2 1 3 5 5 C 1.52998 * 109.47089 * 185.00055 * 4 2 1 6 6 C 1.50699 * 109.46969 * 179.97438 * 5 4 2 7 7 H 1.07999 * 119.99969 * 359.97438 * 6 5 4 8 8 C 1.37880 * 120.00338 * 179.97438 * 6 5 4 9 9 N 1.31517 * 119.99447 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 120.00230 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.46930 * 60.00109 * 10 8 6 12 12 H 1.48501 * 109.47183 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47310 * 300.00274 * 10 8 6 14 14 N 1.46906 * 109.47443 * 239.99532 * 2 1 3 15 15 C 1.46905 * 110.99511 * 85.00018 * 14 2 1 16 16 C 1.53001 * 109.46714 * 180.02562 * 15 14 2 17 17 C 1.52999 * 109.46942 * 180.02562 * 16 15 14 18 18 N 1.46500 * 109.47084 * 179.97438 * 17 16 15 19 19 C 1.34429 * 126.81895 * 124.99739 * 18 17 16 20 20 N 1.30837 * 108.07952 * 180.02562 * 19 18 17 21 21 C 1.33246 * 109.82318 * 359.97438 * 20 19 18 22 22 N 1.30712 * 108.94935 * 0.27015 * 21 20 19 23 23 H 1.09006 * 109.47171 * 60.00330 * 1 2 3 24 24 H 1.09003 * 109.47475 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47207 * 300.00386 * 1 2 3 26 26 H 1.08998 * 109.46461 * 304.99548 * 4 2 1 27 27 H 1.08991 * 109.46959 * 64.99980 * 4 2 1 28 28 H 1.08999 * 109.47331 * 299.99601 * 5 4 2 29 29 H 1.09000 * 109.47404 * 59.99933 * 5 4 2 30 30 H 0.97002 * 119.99661 * 179.97438 * 9 8 6 31 31 H 1.00898 * 111.00134 * 208.95655 * 14 2 1 32 32 H 1.09007 * 109.46876 * 60.00835 * 15 14 2 33 33 H 1.08996 * 109.47148 * 300.00020 * 15 14 2 34 34 H 1.09002 * 109.47043 * 60.00030 * 16 15 14 35 35 H 1.08996 * 109.47276 * 299.99876 * 16 15 14 36 36 H 1.09002 * 109.47279 * 60.00111 * 17 16 15 37 37 H 1.08995 * 109.47424 * 300.00289 * 17 16 15 38 38 H 1.08000 * 125.96340 * 359.97438 * 19 18 17 39 39 H 1.08002 * 125.52127 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5648 -0.6133 1.3137 6 6 4.0670 -1.3232 2.5445 7 1 3.3685 -1.8030 3.2140 8 6 5.4183 -1.3602 2.8159 9 7 6.2689 -0.7755 2.0009 10 14 6.0408 -2.2395 4.3419 11 1 5.6472 -3.6702 4.2839 12 1 7.5208 -2.1349 4.4045 13 1 5.4491 -1.6120 5.5508 14 7 2.0197 -0.6926 -1.1994 15 6 2.0825 0.2225 -2.3469 16 6 2.5951 -0.5333 -3.5744 17 6 2.6611 0.4199 -4.7694 18 7 3.1526 -0.3037 -5.9446 19 6 2.5499 -0.3986 -7.1425 20 7 3.3062 -1.1293 -7.9208 21 6 4.3954 -1.5167 -7.2583 22 7 4.3442 -1.0405 -6.0420 23 1 -0.3634 0.5138 -0.8901 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 1.6053 -0.2617 2.1369 27 1 1.7516 -1.7715 1.2056 28 1 3.9994 -1.0729 0.4261 29 1 3.8532 0.4369 1.3574 30 1 7.2195 -0.8012 2.1920 31 1 2.9173 -1.1206 -1.0286 32 1 2.7590 1.0461 -2.1182 33 1 1.0871 0.6162 -2.5525 34 1 1.9184 -1.3567 -3.8029 35 1 3.5904 -0.9273 -3.3690 36 1 3.3381 1.2430 -4.5406 37 1 1.6661 0.8143 -4.9749 38 1 1.6056 0.0495 -7.4147 39 1 5.1893 -2.1292 -7.6595 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172487939.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:48:40 Heat of formation + Delta-G solvation = 67.745139 kcal Electronic energy + Delta-G solvation = -17864.099491 eV Core-core repulsion = 15035.882493 eV Total energy + Delta-G solvation = -2828.216998 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.15894 -37.59293 -35.47684 -33.33050 -32.17538 -31.32793 -29.83699 -28.86875 -25.62495 -24.78630 -22.32990 -22.08608 -21.35096 -21.11690 -19.49593 -17.46653 -16.53113 -16.10923 -15.43717 -15.38364 -14.77971 -14.54917 -14.41161 -14.17110 -13.54337 -12.85365 -12.76445 -12.53027 -12.33874 -11.97658 -11.87317 -11.49052 -11.36377 -11.15507 -10.94505 -10.87280 -10.51088 -10.30203 -10.13017 -9.92991 -9.82180 -9.76036 -9.30504 -9.06561 -8.37675 -8.06584 -6.02320 -4.04715 1.50736 2.16412 2.83521 3.32410 3.36886 3.39376 4.14446 4.15402 4.43948 4.44512 4.73153 4.93744 4.99626 5.05528 5.24486 5.33696 5.37118 5.47569 5.64692 5.73356 5.86751 5.99774 6.07475 6.11277 6.18490 6.29760 6.30870 6.46445 6.50593 6.64605 6.86817 7.04715 7.43692 7.58401 7.75708 7.83647 7.93661 7.96730 8.40027 9.01671 9.59656 11.08836 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.021267 B = 0.003821 C = 0.003324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.248310 B = 7326.029551 C = 8421.349373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.082 3.918 3 H 0.038 0.962 4 C -0.115 4.115 5 C 0.021 3.979 6 C -0.521 4.521 7 H 0.055 0.945 8 C 0.057 3.943 9 N -0.896 5.896 10 Si 0.892 3.108 11 H -0.276 1.276 12 H -0.287 1.287 13 H -0.277 1.277 14 N -0.688 5.688 15 C 0.063 3.937 16 C -0.129 4.129 17 C 0.130 3.870 18 N -0.374 5.374 19 C 0.249 3.751 20 N -0.552 5.552 21 C 0.192 3.808 22 N -0.310 5.310 23 H 0.042 0.958 24 H 0.057 0.943 25 H 0.051 0.949 26 H 0.054 0.946 27 H 0.057 0.943 28 H 0.015 0.985 29 H 0.012 0.988 30 H 0.261 0.739 31 H 0.354 0.646 32 H 0.032 0.968 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.090 0.910 37 H 0.102 0.898 38 H 0.217 0.783 39 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.690 3.749 -15.327 18.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.027 4.027 3 H 0.056 0.944 4 C -0.153 4.153 5 C -0.016 4.016 6 C -0.559 4.559 7 H 0.073 0.927 8 C -0.144 4.144 9 N -0.535 5.535 10 Si 0.720 3.280 11 H -0.202 1.202 12 H -0.213 1.213 13 H -0.203 1.203 14 N -0.322 5.322 15 C -0.067 4.067 16 C -0.168 4.168 17 C 0.008 3.992 18 N -0.165 5.165 19 C -0.048 4.048 20 N -0.280 5.280 21 C -0.111 4.111 22 N -0.138 5.138 23 H 0.061 0.939 24 H 0.076 0.924 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.033 0.967 29 H 0.030 0.970 30 H 0.071 0.929 31 H 0.176 0.824 32 H 0.050 0.950 33 H 0.086 0.914 34 H 0.094 0.906 35 H 0.099 0.901 36 H 0.109 0.891 37 H 0.120 0.880 38 H 0.233 0.767 39 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -9.657 3.376 -15.229 18.346 hybrid contribution 1.045 0.238 1.090 1.528 sum -8.613 3.614 -14.139 16.945 Atomic orbital electron populations 1.21790 0.95744 1.01711 1.00140 1.21610 0.94482 0.96098 0.90533 0.94400 1.21834 0.99703 0.99463 0.94279 1.19120 0.88745 0.96828 0.96939 1.21195 0.91956 1.34463 1.08325 0.92719 1.25026 0.97073 0.95585 0.96727 1.69948 1.02437 1.44028 1.37061 0.86652 0.77597 0.80274 0.83454 1.20191 1.21290 1.20276 1.60581 1.34926 1.32329 1.04406 1.21825 0.99953 0.94247 0.90711 1.21823 1.03769 0.98396 0.92795 1.21877 1.00135 0.94395 0.82826 1.50632 1.15754 1.38299 1.11817 1.26050 0.99579 0.96705 0.82474 1.70526 1.05822 1.17777 1.33830 1.26028 0.97165 0.99574 0.88300 1.78134 1.01938 1.13019 1.20727 0.93866 0.92386 0.92986 0.92689 0.92453 0.96687 0.97004 0.92945 0.82415 0.95017 0.91385 0.90593 0.90142 0.89144 0.88005 0.76657 0.76786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 9.41 37.15 0.35 -1.54 16 2 C 0.08 1.37 2.65 -67.71 -0.18 1.19 16 3 H 0.04 0.65 7.80 -51.93 -0.40 0.25 16 4 C -0.11 -2.33 4.74 -26.73 -0.13 -2.45 16 5 C 0.02 0.53 4.80 -27.88 -0.13 0.39 16 6 C -0.52 -14.70 9.11 -34.44 -0.31 -15.02 16 7 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 8 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 9 N -0.90 -26.82 13.29 55.43 0.74 -26.08 16 10 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 13 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 14 N -0.69 -10.96 6.31 -106.72 -0.67 -11.63 16 15 C 0.06 0.78 5.48 -3.82 -0.02 0.76 16 16 C -0.13 -1.47 5.68 -26.73 -0.15 -1.62 16 17 C 0.13 1.13 6.55 -4.04 -0.03 1.10 16 18 N -0.37 -4.06 3.69 -62.63 -0.23 -4.29 16 19 C 0.25 2.32 12.63 -90.65 -1.14 1.18 16 20 N -0.55 -6.49 11.19 -15.83 -0.18 -6.66 16 21 C 0.19 2.25 13.03 -91.81 -1.20 1.05 16 22 N -0.31 -4.17 12.56 29.29 0.37 -3.80 16 23 H 0.04 0.53 7.45 -51.93 -0.39 0.14 16 24 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 27 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 28 H 0.01 0.39 6.43 -51.93 -0.33 0.06 16 29 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 31 H 0.35 6.46 6.47 -39.29 -0.25 6.21 16 32 H 0.03 0.41 8.06 -51.93 -0.42 0.00 16 33 H 0.07 0.73 7.44 -51.93 -0.39 0.34 16 34 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.10 0.53 8.09 -51.93 -0.42 0.11 16 38 H 0.22 0.96 8.06 -52.49 -0.42 0.54 16 39 H 0.22 1.77 8.06 -52.49 -0.42 1.35 16 LS Contribution 326.48 15.07 4.92 4.92 Total: -1.00 -33.04 326.48 -9.49 -42.53 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -6.37 Total: 1.74 kcal Atomic # 6 Polarization: -10.38 SS G_CDS: -3.04 Total: -13.42 kcal Atomic # 7 Polarization: -52.49 SS G_CDS: 0.02 Total: -52.47 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.04 -9.49 -42.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172487939.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.276 kcal (2) G-P(sol) polarization free energy of solvation -33.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds