Wall clock time and date at job start Sun Mar 29 2020 23:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.31000 * 119.99664 * 2 1 4 4 C 1.50707 * 120.00051 * 179.97438 * 3 2 1 5 5 H 1.08994 * 109.46812 * 120.00127 * 4 3 2 6 6 O 1.42905 * 109.46650 * 0.02562 * 4 3 2 7 7 C 1.42899 * 113.99877 * 89.99779 * 6 4 3 8 8 C 1.53003 * 109.47134 * 179.97438 * 7 6 4 9 9 C 1.50697 * 109.47350 * 179.97438 * 8 7 6 10 10 H 1.08010 * 119.99917 * 0.02562 * 9 8 7 11 11 C 1.37879 * 120.00185 * 179.97438 * 9 8 7 12 12 N 1.31506 * 119.99949 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99799 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47517 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.47048 * 120.00219 * 13 11 9 16 16 H 1.48501 * 109.46754 * 240.00162 * 13 11 9 17 17 C 1.52997 * 109.47376 * 240.00488 * 4 3 2 18 18 C 1.52996 * 109.46975 * 184.99777 * 17 4 3 19 19 C 1.53000 * 109.47328 * 180.02562 * 18 17 4 20 20 C 1.52997 * 109.47060 * 60.00126 * 19 18 17 21 21 C 1.53006 * 109.47127 * 300.00449 * 20 19 18 22 22 C 1.52997 * 109.47164 * 59.99836 * 21 20 19 23 23 H 1.09005 * 109.46634 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.47328 * 299.99596 * 1 2 3 25 25 H 1.09007 * 109.47344 * 60.00071 * 1 2 3 26 26 H 1.07995 * 120.00421 * 180.02562 * 2 1 3 27 27 H 1.08000 * 120.00627 * 0.02562 * 3 2 1 28 28 H 1.08996 * 109.47233 * 299.99828 * 7 6 4 29 29 H 1.08999 * 109.47243 * 59.99962 * 7 6 4 30 30 H 1.08996 * 109.47306 * 300.00256 * 8 7 6 31 31 H 1.08999 * 109.46700 * 60.00102 * 8 7 6 32 32 H 0.96994 * 120.00083 * 179.97438 * 12 11 9 33 33 H 1.08992 * 109.47280 * 305.00312 * 17 4 3 34 34 H 1.09004 * 109.47368 * 60.00217 * 18 17 4 35 35 H 1.09001 * 109.47372 * 300.00372 * 18 17 4 36 36 H 1.09002 * 109.47398 * 180.02562 * 19 18 17 37 37 H 1.09001 * 109.47194 * 300.00476 * 19 18 17 38 38 H 1.08998 * 109.47533 * 59.99948 * 20 19 18 39 39 H 1.08996 * 109.47853 * 180.02562 * 20 19 18 40 40 H 1.09001 * 109.47002 * 299.99574 * 21 20 19 41 41 H 1.09000 * 109.47050 * 179.97438 * 21 20 19 42 42 H 1.09002 * 109.47045 * 180.02562 * 22 21 20 43 43 H 1.09001 * 109.47375 * 59.99966 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1619 1.1345 0.0000 4 6 3.6690 1.1346 0.0006 5 1 4.0325 1.6483 -0.8893 6 8 4.1453 -0.2127 0.0005 7 6 4.3395 -0.7604 -1.3050 8 6 4.8484 -2.1982 -1.1844 9 6 5.0526 -2.7761 -2.5611 10 1 4.8410 -2.1774 -3.4349 11 6 5.5107 -4.0685 -2.7054 12 7 5.7688 -4.7972 -1.6415 13 14 5.7644 -4.7844 -4.4120 14 1 5.4051 -3.7683 -5.4336 15 1 7.1881 -5.1720 -4.5795 16 1 4.9023 -5.9819 -4.5795 17 6 4.1785 1.8561 1.2499 18 6 5.7033 1.9658 1.1891 19 6 6.2130 2.6867 2.4387 20 6 5.8079 1.8962 3.6844 21 6 4.2830 1.7863 3.7452 22 6 3.7734 1.0654 2.4956 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 2.0470 -0.9352 -0.0004 27 1 1.6220 2.0699 0.0004 28 1 3.3934 -0.7537 -1.8463 29 1 5.0715 -0.1604 -1.8456 30 1 5.7946 -2.2046 -0.6433 31 1 4.1167 -2.7984 -0.6437 32 1 6.0907 -5.7065 -1.7430 33 1 3.7438 2.8545 1.2955 34 1 5.9920 2.5287 0.3014 35 1 6.1380 0.9673 1.1434 36 1 7.2993 2.7653 2.3952 37 1 5.7783 3.6852 2.4848 38 1 6.2424 0.8976 3.6384 39 1 6.1705 2.4099 4.5747 40 1 3.8483 2.7848 3.7913 41 1 3.9944 1.2227 4.6324 42 1 2.6870 0.9876 2.5387 43 1 4.2081 0.0669 2.4494 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205647845.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:59:04 Heat of formation + Delta-G solvation = -75.932661 kcal Electronic energy + Delta-G solvation = -19218.543046 eV Core-core repulsion = 16455.343303 eV Total energy + Delta-G solvation = -2763.199742 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.183 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.23420 -37.02828 -34.30583 -33.11664 -31.67621 -30.57180 -29.56041 -27.71911 -24.75148 -23.96100 -22.38809 -21.06683 -20.72341 -19.44504 -18.93761 -16.48874 -15.71945 -15.52378 -15.20607 -14.53733 -14.17321 -13.96295 -13.81063 -13.41158 -13.20191 -13.09180 -12.61173 -12.33365 -12.17135 -12.01466 -11.61436 -11.41014 -11.05415 -11.02339 -10.96902 -10.88791 -10.72397 -10.45621 -10.38708 -10.24000 -9.91833 -9.80586 -9.42308 -9.16736 -8.87065 -8.55288 -8.33578 -6.02249 -4.05395 2.53105 3.30346 3.37522 3.41530 4.31735 4.55855 4.80280 4.85123 4.92538 5.15134 5.34057 5.35652 5.42547 5.47733 5.54826 5.58598 5.66622 5.69087 5.69375 5.76655 5.78795 5.91560 6.03830 6.05578 6.11612 6.17311 6.29529 6.31933 6.34766 6.36807 6.44596 6.47300 6.55675 6.77081 6.94156 7.03626 7.15361 7.60672 7.81403 7.88015 8.16657 8.38772 9.01568 9.58391 11.09444 Molecular weight = 252.18amu Principal moments of inertia in cm(-1) A = 0.019847 B = 0.005239 C = 0.004518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.434984 B = 5343.109252 C = 6196.364761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.144 4.144 3 C -0.196 4.196 4 C 0.121 3.879 5 H 0.059 0.941 6 O -0.375 6.375 7 C 0.067 3.933 8 C 0.027 3.973 9 C -0.522 4.522 10 H 0.056 0.944 11 C 0.059 3.941 12 N -0.891 5.891 13 Si 0.894 3.106 14 H -0.273 1.273 15 H -0.283 1.283 16 H -0.283 1.283 17 C -0.071 4.071 18 C -0.116 4.116 19 C -0.116 4.116 20 C -0.120 4.120 21 C -0.118 4.118 22 C -0.108 4.108 23 H 0.060 0.940 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.125 0.875 27 H 0.104 0.896 28 H 0.034 0.966 29 H 0.032 0.968 30 H 0.023 0.977 31 H 0.022 0.978 32 H 0.261 0.739 33 H 0.070 0.930 34 H 0.056 0.944 35 H 0.075 0.925 36 H 0.058 0.942 37 H 0.055 0.945 38 H 0.064 0.936 39 H 0.054 0.946 40 H 0.054 0.946 41 H 0.057 0.943 42 H 0.059 0.941 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.964 14.826 7.955 17.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.162 4.162 3 C -0.215 4.215 4 C 0.062 3.938 5 H 0.077 0.923 6 O -0.294 6.294 7 C -0.009 4.009 8 C -0.010 4.010 9 C -0.560 4.560 10 H 0.074 0.926 11 C -0.142 4.142 12 N -0.530 5.530 13 Si 0.722 3.278 14 H -0.197 1.197 15 H -0.209 1.209 16 H -0.209 1.209 17 C -0.090 4.090 18 C -0.153 4.153 19 C -0.154 4.154 20 C -0.158 4.158 21 C -0.156 4.156 22 C -0.145 4.145 23 H 0.079 0.921 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.143 0.857 27 H 0.122 0.878 28 H 0.053 0.947 29 H 0.050 0.950 30 H 0.041 0.959 31 H 0.041 0.959 32 H 0.071 0.929 33 H 0.089 0.911 34 H 0.074 0.926 35 H 0.094 0.906 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.083 0.917 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.864 14.541 8.173 17.375 hybrid contribution 0.054 -0.297 -1.235 1.272 sum -4.810 14.244 6.938 16.557 Atomic orbital electron populations 1.20856 0.93872 1.02156 1.01190 1.22988 0.95358 0.99692 0.98161 1.23233 0.96461 0.97912 1.03873 1.20925 0.90307 0.85310 0.97209 0.92344 1.87952 1.85683 1.25653 1.30105 1.22903 0.98006 0.97608 0.82339 1.19042 0.96949 0.87670 0.97325 1.21102 1.44621 0.98201 0.92098 0.92607 1.24981 0.95402 0.97033 0.96817 1.69985 1.45239 1.09355 1.28435 0.86504 0.77823 0.79091 0.84400 1.19716 1.20929 1.20925 1.21152 0.95659 0.97955 0.94219 1.21572 0.95125 1.01696 0.96933 1.21507 1.00139 0.98670 0.95056 1.21537 0.96185 1.00712 0.97326 1.21547 0.95630 1.00171 0.98226 1.21454 1.00401 0.99970 0.92692 0.92133 0.92216 0.92178 0.85725 0.87789 0.94721 0.94968 0.95864 0.95912 0.92946 0.91134 0.92555 0.90604 0.92338 0.92590 0.91733 0.92711 0.92685 0.92437 0.92253 0.90632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.52 10.17 36.00 0.37 -1.16 16 2 C -0.14 -2.20 9.05 -36.03 -0.33 -2.53 16 3 C -0.20 -2.83 8.12 -36.02 -0.29 -3.12 16 4 C 0.12 1.88 2.34 -27.88 -0.07 1.81 16 5 H 0.06 0.90 7.78 -51.93 -0.40 0.50 16 6 O -0.37 -7.28 7.34 -35.23 -0.26 -7.54 16 7 C 0.07 1.47 5.12 37.16 0.19 1.66 16 8 C 0.03 0.73 5.34 -27.88 -0.15 0.58 16 9 C -0.52 -14.93 9.11 -34.44 -0.31 -15.24 16 10 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 11 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 12 N -0.89 -27.02 13.29 55.43 0.74 -26.28 16 13 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 14 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 15 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 16 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 17 C -0.07 -0.95 2.02 -90.62 -0.18 -1.13 16 18 C -0.12 -1.53 5.10 -26.73 -0.14 -1.67 16 19 C -0.12 -1.30 5.92 -26.73 -0.16 -1.46 16 20 C -0.12 -1.34 5.92 -26.73 -0.16 -1.50 16 21 C -0.12 -1.34 5.92 -26.73 -0.16 -1.49 16 22 C -0.11 -1.45 4.82 -26.73 -0.13 -1.58 16 23 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 24 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.12 2.29 6.35 -52.49 -0.33 1.95 16 27 H 0.10 1.28 8.05 -52.49 -0.42 0.86 16 28 H 0.03 0.74 7.53 -51.93 -0.39 0.35 16 29 H 0.03 0.69 8.08 -51.93 -0.42 0.27 16 30 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.08 1.19 7.82 -51.93 -0.41 0.79 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.06 0.80 7.38 -51.93 -0.38 0.42 16 43 H 0.07 1.21 7.56 -51.93 -0.39 0.82 16 LS Contribution 338.34 15.07 5.10 5.10 Total: -1.00 -29.56 338.34 -9.24 -38.80 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -8.19 Total: -1.55 kcal Atomic # 6 Polarization: -23.60 SS G_CDS: -1.61 Total: -25.21 kcal Atomic # 7 Polarization: -27.02 SS G_CDS: 0.74 Total: -26.28 kcal Atomic # 8 Polarization: -7.28 SS G_CDS: -0.26 Total: -7.54 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.56 -9.24 -38.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205647845.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.128 kcal (2) G-P(sol) polarization free energy of solvation -29.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds