Wall clock time and date at job start Sun Mar 29 2020 23:59:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50695 * 120.00401 * 2 1 4 4 C 1.50696 * 119.99479 * 180.02562 * 2 1 3 5 5 H 1.09002 * 109.47769 * 0.02562 * 4 2 1 6 6 C 1.53006 * 109.47268 * 240.00057 * 4 2 1 7 7 C 1.53002 * 109.47436 * 180.02562 * 6 4 2 8 8 C 1.52999 * 109.46877 * 60.00000 * 7 6 4 9 9 H 1.08998 * 109.47529 * 60.00085 * 8 7 6 10 10 C 1.53002 * 109.46877 * 179.97438 * 8 7 6 11 11 C 1.52996 * 109.47258 * 299.99679 * 8 7 6 12 12 C 1.53000 * 109.47562 * 120.00240 * 4 2 1 13 13 H 1.08993 * 109.46984 * 59.99287 * 12 4 2 14 14 O 1.42902 * 109.46922 * 299.99879 * 12 4 2 15 15 C 1.42898 * 114.00186 * 149.99499 * 14 12 4 16 16 C 1.52997 * 109.47319 * 180.02562 * 15 14 12 17 17 C 1.50697 * 109.47466 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99890 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00428 * 179.97438 * 17 16 15 20 20 N 1.31519 * 119.99563 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00432 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46756 * 59.99920 * 21 19 17 23 23 H 1.48490 * 109.47381 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.47117 * 300.00527 * 21 19 17 25 25 H 1.08002 * 119.99501 * 0.02562 * 1 2 3 26 26 H 1.07996 * 120.00306 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47545 * 239.99808 * 3 2 1 28 28 H 1.08997 * 109.47277 * 0.02562 * 3 2 1 29 29 H 1.09007 * 109.47083 * 119.99709 * 3 2 1 30 30 H 1.09007 * 109.46826 * 300.00139 * 6 4 2 31 31 H 1.09002 * 109.47183 * 59.99656 * 6 4 2 32 32 H 1.09000 * 109.46986 * 179.97438 * 7 6 4 33 33 H 1.08997 * 109.46833 * 300.00277 * 7 6 4 34 34 H 1.09007 * 109.47188 * 59.99870 * 10 8 7 35 35 H 1.09002 * 109.47255 * 179.97438 * 10 8 7 36 36 H 1.09000 * 109.46986 * 299.99840 * 10 8 7 37 37 H 1.08997 * 109.47687 * 300.00479 * 11 8 7 38 38 H 1.09001 * 109.47210 * 179.97438 * 11 8 7 39 39 H 1.09002 * 109.47259 * 300.00293 * 15 14 12 40 40 H 1.09001 * 109.47074 * 60.00315 * 15 14 12 41 41 H 1.09002 * 109.47153 * 300.00307 * 16 15 14 42 42 H 1.08998 * 109.47533 * 59.99936 * 16 15 14 43 43 H 0.97002 * 119.99731 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 2.0634 -1.3051 -0.0006 5 1 1.3551 -2.1337 -0.0014 6 6 2.9430 -1.3869 1.2487 7 6 3.7084 -2.7117 1.2478 8 6 4.5881 -2.7916 -0.0015 9 1 5.2962 -1.9629 -0.0009 10 6 5.3540 -4.1161 -0.0020 11 6 3.7085 -2.7100 -1.2507 12 6 2.9431 -1.3858 -1.2498 13 1 3.6514 -0.5574 -1.2494 14 8 2.1216 -1.3095 -2.4166 15 6 2.7665 -0.7130 -3.5436 16 6 1.7989 -0.6833 -4.7283 17 6 2.4792 -0.0548 -5.9171 18 1 3.4999 0.2887 -5.8358 19 6 1.7991 0.0807 -7.1087 20 7 0.5563 -0.3382 -7.2078 21 14 2.6422 0.8604 -8.5820 22 1 3.8434 0.0654 -8.9429 23 1 1.7035 0.8880 -9.7323 24 1 3.0503 2.2472 -8.2422 25 1 -0.5399 0.9354 -0.0004 26 1 -0.5400 -0.9352 -0.0004 27 1 2.6903 1.3628 -0.8899 28 1 1.3554 2.1335 0.0005 29 1 2.6902 1.3627 0.8901 30 1 3.6514 -0.5584 1.2490 31 1 2.3164 -1.3294 2.1387 32 1 4.3354 -2.7696 2.1375 33 1 3.0003 -3.5403 1.2471 34 1 4.6462 -4.9451 -0.0024 35 1 5.9804 -4.1733 -0.8923 36 1 5.9807 -4.1738 0.8879 37 1 3.0004 -3.5386 -1.2513 38 1 4.3353 -2.7664 -2.1407 39 1 3.0661 0.3049 -3.2941 40 1 3.6482 -1.2966 -3.8086 41 1 1.4989 -1.7011 -4.9780 42 1 0.9175 -0.0996 -4.4631 43 1 0.0779 -0.2432 -8.0463 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205649470.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:59:07 Heat of formation + Delta-G solvation = -73.378357 kcal Electronic energy + Delta-G solvation = -19296.641063 eV Core-core repulsion = 16533.552084 eV Total energy + Delta-G solvation = -2763.088980 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.183 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.57635 -36.41391 -35.42839 -33.15821 -31.28042 -30.40201 -28.84836 -27.19529 -26.22131 -24.56033 -22.36996 -21.39055 -20.81136 -19.73143 -18.19876 -16.60768 -15.64636 -15.22921 -15.07092 -14.64440 -14.49941 -14.25367 -13.69170 -13.54053 -13.10408 -12.89265 -12.74909 -12.33225 -12.14732 -12.14374 -11.77863 -11.54998 -11.29522 -11.20019 -10.97761 -10.86278 -10.66771 -10.64691 -10.52006 -10.34229 -10.08849 -9.93167 -9.41211 -9.17481 -8.78230 -8.64522 -8.31858 -6.00315 -4.03834 2.54964 3.33353 3.37541 3.39708 4.20918 4.48863 4.64467 4.71729 4.95612 5.04139 5.22513 5.23827 5.35495 5.37126 5.43393 5.47674 5.56058 5.62365 5.66418 5.72363 5.81215 5.84440 5.89606 5.99762 6.05647 6.10256 6.13325 6.16948 6.21302 6.27794 6.28388 6.35361 6.46711 6.53812 6.91222 6.95316 7.16020 7.61372 7.84202 7.88769 8.18922 8.40285 9.02704 9.59555 11.11289 Molecular weight = 252.18amu Principal moments of inertia in cm(-1) A = 0.022533 B = 0.005072 C = 0.004440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.336122 B = 5518.860376 C = 6304.479276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.110 4.110 3 C -0.118 4.118 4 C -0.047 4.047 5 H 0.079 0.921 6 C -0.108 4.108 7 C -0.115 4.115 8 C -0.090 4.090 9 H 0.068 0.932 10 C -0.146 4.146 11 C -0.137 4.137 12 C 0.098 3.902 13 H 0.053 0.947 14 O -0.379 6.379 15 C 0.071 3.929 16 C 0.027 3.973 17 C -0.524 4.524 18 H 0.055 0.945 19 C 0.060 3.940 20 N -0.891 5.891 21 Si 0.895 3.105 22 H -0.276 1.276 23 H -0.286 1.286 24 H -0.276 1.276 25 H 0.093 0.907 26 H 0.094 0.906 27 H 0.066 0.934 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.052 0.948 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.031 0.969 40 H 0.031 0.969 41 H 0.023 0.977 42 H 0.023 0.977 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.197 -2.894 18.139 19.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.110 4.110 3 C -0.175 4.175 4 C -0.066 4.066 5 H 0.097 0.903 6 C -0.145 4.145 7 C -0.152 4.152 8 C -0.109 4.109 9 H 0.086 0.914 10 C -0.203 4.203 11 C -0.174 4.174 12 C 0.040 3.960 13 H 0.071 0.929 14 O -0.299 6.299 15 C -0.004 4.004 16 C -0.010 4.010 17 C -0.562 4.562 18 H 0.073 0.927 19 C -0.142 4.142 20 N -0.530 5.530 21 Si 0.723 3.277 22 H -0.202 1.202 23 H -0.212 1.212 24 H -0.202 1.202 25 H 0.112 0.888 26 H 0.112 0.888 27 H 0.085 0.915 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.049 0.951 40 H 0.050 0.950 41 H 0.041 0.959 42 H 0.042 0.958 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.853 -2.973 17.996 19.156 hybrid contribution 0.637 0.502 -1.019 1.303 sum 6.490 -2.470 16.977 18.342 Atomic orbital electron populations 1.23601 0.95131 1.01440 1.02608 1.21479 0.95244 0.94983 0.99251 1.20853 1.00296 0.94608 1.01718 1.20327 0.96973 0.95625 0.93665 0.90257 1.21535 0.98293 0.97710 0.97009 1.21625 0.98456 0.97757 0.97371 1.21105 0.96902 0.98057 0.94839 0.91373 1.21819 0.99946 0.97141 1.01427 1.22111 0.98809 0.99032 0.97489 1.21888 0.91861 0.95938 0.86357 0.92870 1.87975 1.39920 1.82108 1.19865 1.22853 0.96920 0.94303 0.86361 1.19035 0.94442 0.98040 0.89490 1.21024 0.99157 1.40233 0.95774 0.92720 1.24986 0.94868 0.95586 0.98778 1.69978 1.10029 1.46680 1.26295 0.86608 0.79261 0.79844 0.81994 1.20200 1.21178 1.20191 0.88847 0.88762 0.91527 0.92186 0.92120 0.91781 0.91619 0.92056 0.91841 0.92688 0.92658 0.92935 0.91270 0.91604 0.95051 0.95024 0.95897 0.95818 0.92840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.72 13.93 29.01 0.40 -2.31 16 2 C -0.11 -1.56 4.51 -101.07 -0.46 -2.01 16 3 C -0.12 -1.52 9.46 36.00 0.34 -1.18 16 4 C -0.05 -0.65 2.11 -91.77 -0.19 -0.84 16 5 H 0.08 1.14 7.78 -51.93 -0.40 0.73 16 6 C -0.11 -1.15 4.99 -26.73 -0.13 -1.28 16 7 C -0.11 -1.13 5.20 -26.73 -0.14 -1.27 16 8 C -0.09 -0.98 2.72 -90.62 -0.25 -1.23 16 9 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 10 C -0.15 -1.40 9.19 37.16 0.34 -1.06 16 11 C -0.14 -1.90 4.82 -26.76 -0.13 -2.03 16 12 C 0.10 1.54 1.83 -26.76 -0.05 1.50 16 13 H 0.05 0.83 6.93 -51.93 -0.36 0.47 16 14 O -0.38 -7.82 9.61 -35.23 -0.34 -8.16 16 15 C 0.07 1.61 5.69 37.16 0.21 1.82 16 16 C 0.03 0.74 5.34 -27.89 -0.15 0.60 16 17 C -0.52 -15.17 9.11 -34.44 -0.31 -15.49 16 18 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 19 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 20 N -0.89 -27.31 13.29 55.43 0.74 -26.57 16 21 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 H 0.09 1.23 7.83 -52.49 -0.41 0.82 16 26 H 0.09 1.31 7.83 -52.49 -0.41 0.90 16 27 H 0.07 0.94 7.38 -51.93 -0.38 0.56 16 28 H 0.06 0.73 7.78 -51.93 -0.40 0.32 16 29 H 0.06 0.65 7.38 -51.93 -0.38 0.27 16 30 H 0.06 0.66 7.29 -51.93 -0.38 0.28 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.07 0.98 7.87 -51.93 -0.41 0.57 16 39 H 0.03 0.68 8.09 -51.93 -0.42 0.26 16 40 H 0.03 0.69 7.87 -51.93 -0.41 0.28 16 41 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 339.59 15.07 5.12 5.12 Total: -1.00 -30.65 339.59 -8.25 -38.90 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: -8.14 Total: -2.94 kcal Atomic # 6 Polarization: -22.55 SS G_CDS: -0.61 Total: -23.16 kcal Atomic # 7 Polarization: -27.31 SS G_CDS: 0.74 Total: -26.57 kcal Atomic # 8 Polarization: -7.82 SS G_CDS: -0.34 Total: -8.16 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.65 -8.25 -38.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205649470.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.478 kcal (2) G-P(sol) polarization free energy of solvation -30.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds