Wall clock time and date at job start Sun Mar 29 2020 23:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50700 * 120.00275 * 2 1 4 4 C 1.50712 * 119.99969 * 180.02562 * 2 1 3 5 5 H 1.09000 * 109.46559 * 359.97438 * 4 2 1 6 6 C 1.52997 * 109.46964 * 239.99498 * 4 2 1 7 7 C 1.52999 * 109.46991 * 179.97438 * 6 4 2 8 8 C 1.53006 * 109.46626 * 60.00378 * 7 6 4 9 9 H 1.09001 * 109.46801 * 59.99811 * 8 7 6 10 10 C 1.52999 * 109.46623 * 179.97438 * 8 7 6 11 11 C 1.52997 * 109.47127 * 299.99539 * 8 7 6 12 12 C 1.52996 * 109.47086 * 119.99606 * 4 2 1 13 13 H 1.09000 * 109.47054 * 299.99950 * 12 4 2 14 14 O 1.42898 * 109.47379 * 60.00195 * 12 4 2 15 15 C 1.42904 * 113.99881 * 210.00164 * 14 12 4 16 16 C 1.52994 * 109.46892 * 179.97438 * 15 14 12 17 17 C 1.50699 * 109.47326 * 179.97438 * 16 15 14 18 18 H 1.08007 * 119.99867 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00125 * 179.97438 * 17 16 15 20 20 N 1.31513 * 120.00301 * 0.02562 * 19 17 16 21 21 Si 1.86809 * 119.99823 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47020 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.47050 * 119.99906 * 21 19 17 24 24 H 1.48499 * 109.47161 * 240.00064 * 21 19 17 25 25 H 1.07998 * 119.99992 * 359.97438 * 1 2 3 26 26 H 1.08000 * 120.00071 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47248 * 180.02562 * 3 2 1 28 28 H 1.08998 * 109.46915 * 300.00083 * 3 2 1 29 29 H 1.08996 * 109.47156 * 60.00313 * 3 2 1 30 30 H 1.09002 * 109.47153 * 60.00001 * 6 4 2 31 31 H 1.08993 * 109.47194 * 300.00289 * 6 4 2 32 32 H 1.08993 * 109.47839 * 300.00447 * 7 6 4 33 33 H 1.09000 * 109.47160 * 180.02562 * 7 6 4 34 34 H 1.09001 * 109.47362 * 60.00551 * 10 8 7 35 35 H 1.09002 * 109.46716 * 179.97438 * 10 8 7 36 36 H 1.09000 * 109.47486 * 299.99829 * 10 8 7 37 37 H 1.09002 * 109.47153 * 180.02562 * 11 8 7 38 38 H 1.08996 * 109.46952 * 300.00302 * 11 8 7 39 39 H 1.09001 * 109.46488 * 299.99631 * 15 14 12 40 40 H 1.08999 * 109.47387 * 59.99889 * 15 14 12 41 41 H 1.09008 * 109.47086 * 299.99498 * 16 15 14 42 42 H 1.09006 * 109.47420 * 59.99708 * 16 15 14 43 43 H 0.97001 * 119.99943 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.0635 -1.3052 -0.0006 5 1 1.3551 -2.1336 -0.0005 6 6 2.9432 -1.3867 1.2485 7 6 3.7077 -2.7120 1.2483 8 6 4.5873 -2.7930 -0.0011 9 1 5.2958 -1.9647 -0.0009 10 6 5.3523 -4.1181 -0.0010 11 6 3.7076 -2.7115 -1.2502 12 6 2.9431 -1.3857 -1.2499 13 1 2.3163 -1.3276 -2.1398 14 8 3.8717 -0.2996 -1.2495 15 6 4.2493 0.1427 -2.5549 16 6 5.2400 1.3022 -2.4337 17 6 5.6387 1.7683 -3.8102 18 1 5.2263 1.2860 -4.6841 19 6 6.5291 2.8112 -3.9539 20 7 7.0308 3.3989 -2.8898 21 14 7.0238 3.3884 -5.6603 22 1 6.3245 2.5688 -6.6822 23 1 6.6476 4.8151 -5.8286 24 1 8.4921 3.2407 -5.8265 25 1 -0.5400 0.9353 0.0004 26 1 -0.5400 -0.9353 0.0004 27 1 3.1352 1.1059 -0.0005 28 1 1.8002 1.8766 -0.8900 29 1 1.8003 1.8766 0.8900 30 1 2.3166 -1.3293 2.1386 31 1 3.6515 -0.5583 1.2489 32 1 2.9993 -3.5403 1.2482 33 1 4.3341 -2.7703 2.1384 34 1 4.6440 -4.9466 -0.0010 35 1 5.9785 -4.1760 -0.8913 36 1 5.9790 -4.1758 0.8889 37 1 4.3341 -2.7697 -2.1403 38 1 2.9991 -3.5398 -1.2503 39 1 4.7167 -0.6800 -3.0961 40 1 3.3638 0.4768 -3.0956 41 1 4.7721 2.1248 -1.8925 42 1 6.1256 0.9685 -1.8927 43 1 7.6575 4.1324 -2.9909 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205649479.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:59:16 Heat of formation + Delta-G solvation = -69.973669 kcal Electronic energy + Delta-G solvation = -19647.701950 eV Core-core repulsion = 16884.760609 eV Total energy + Delta-G solvation = -2762.941341 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.183 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.63123 -36.08879 -35.34904 -33.14970 -31.15571 -30.36182 -29.02812 -26.89147 -26.13527 -24.54928 -22.36211 -21.43148 -20.82912 -19.33726 -18.19020 -16.45659 -15.53742 -15.34398 -15.12961 -14.73090 -14.35038 -14.00104 -13.63234 -13.33706 -13.15492 -12.71553 -12.57701 -12.27206 -12.13150 -11.78573 -11.68018 -11.43191 -11.27344 -11.11416 -11.04510 -10.76657 -10.69866 -10.51697 -10.43550 -10.20324 -9.88949 -9.80771 -9.43375 -9.16184 -8.84238 -8.56409 -8.32509 -6.02744 -4.05738 2.45145 3.29893 3.37205 3.41030 4.28367 4.52100 4.78557 4.87466 4.97560 5.14694 5.28501 5.33676 5.35915 5.42054 5.57253 5.65197 5.67968 5.73439 5.90073 5.93691 5.94012 5.96164 6.06369 6.07626 6.16842 6.23660 6.26491 6.31386 6.37990 6.43294 6.50684 6.52510 6.66483 6.71738 6.90167 6.94765 7.24334 7.58733 7.81652 7.86713 8.15893 8.38565 9.01222 9.58073 11.08837 Molecular weight = 252.18amu Principal moments of inertia in cm(-1) A = 0.021282 B = 0.005667 C = 0.004897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.375448 B = 4939.785004 C = 5716.264127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.092 4.092 3 C -0.129 4.129 4 C -0.049 4.049 5 H 0.076 0.924 6 C -0.107 4.107 7 C -0.110 4.110 8 C -0.089 4.089 9 H 0.083 0.917 10 C -0.146 4.146 11 C -0.133 4.133 12 C 0.097 3.903 13 H 0.052 0.948 14 O -0.371 6.371 15 C 0.069 3.931 16 C 0.028 3.972 17 C -0.522 4.522 18 H 0.055 0.945 19 C 0.059 3.941 20 N -0.891 5.891 21 Si 0.893 3.107 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.283 1.283 25 H 0.093 0.907 26 H 0.090 0.910 27 H 0.096 0.904 28 H 0.062 0.938 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.078 0.922 32 H 0.054 0.946 33 H 0.059 0.941 34 H 0.048 0.952 35 H 0.053 0.947 36 H 0.051 0.949 37 H 0.064 0.936 38 H 0.061 0.939 39 H 0.031 0.969 40 H 0.032 0.968 41 H 0.024 0.976 42 H 0.023 0.977 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.269 -11.928 7.357 16.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C -0.092 4.092 3 C -0.185 4.185 4 C -0.067 4.067 5 H 0.094 0.906 6 C -0.144 4.144 7 C -0.147 4.147 8 C -0.107 4.107 9 H 0.102 0.898 10 C -0.203 4.203 11 C -0.171 4.171 12 C 0.039 3.961 13 H 0.070 0.930 14 O -0.291 6.291 15 C -0.007 4.007 16 C -0.009 4.009 17 C -0.560 4.560 18 H 0.073 0.927 19 C -0.142 4.142 20 N -0.530 5.530 21 Si 0.721 3.279 22 H -0.197 1.197 23 H -0.209 1.209 24 H -0.209 1.209 25 H 0.112 0.888 26 H 0.108 0.892 27 H 0.115 0.885 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.097 0.903 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.050 0.950 40 H 0.050 0.950 41 H 0.042 0.958 42 H 0.041 0.959 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.071 -11.702 7.573 16.631 hybrid contribution 0.114 0.238 -1.281 1.308 sum -8.957 -11.464 6.292 15.851 Atomic orbital electron populations 1.23558 0.95320 1.01177 1.05946 1.21805 0.94745 0.96132 0.96484 1.21055 1.03292 0.93412 1.00723 1.20426 0.95954 0.94843 0.95475 0.90622 1.21464 0.98502 0.98486 0.95986 1.21559 0.98235 0.97223 0.97683 1.21028 0.97344 0.98178 0.94147 0.89821 1.21833 0.99835 0.97139 1.01507 1.22070 0.99104 0.97353 0.98589 1.21888 0.90319 0.87425 0.96510 0.92966 1.87933 1.62084 1.49215 1.29844 1.22863 0.97779 0.97596 0.82456 1.19042 0.93231 0.91367 0.97280 1.21106 1.26061 1.16713 0.92151 0.92658 1.24977 0.96072 0.96391 0.96779 1.69986 1.30920 1.23701 1.28392 0.86516 0.78334 0.78589 0.84443 1.19742 1.20936 1.20931 0.88825 0.89186 0.88544 0.91942 0.92839 0.92609 0.90308 0.92733 0.92227 0.93309 0.92805 0.92973 0.91686 0.92033 0.95045 0.95019 0.95802 0.95904 0.92958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.83 13.95 29.01 0.40 -2.42 16 2 C -0.09 -1.30 4.86 -101.06 -0.49 -1.79 16 3 C -0.13 -2.02 9.03 36.01 0.33 -1.70 16 4 C -0.05 -0.65 2.24 -91.77 -0.21 -0.85 16 5 H 0.08 0.91 7.78 -51.93 -0.40 0.50 16 6 C -0.11 -1.38 4.89 -26.73 -0.13 -1.51 16 7 C -0.11 -1.28 5.20 -26.73 -0.14 -1.42 16 8 C -0.09 -1.16 2.57 -90.62 -0.23 -1.39 16 9 H 0.08 1.32 7.68 -51.93 -0.40 0.92 16 10 C -0.15 -1.64 9.19 37.16 0.34 -1.30 16 11 C -0.13 -1.80 4.91 -26.71 -0.13 -1.93 16 12 C 0.10 1.47 2.34 -26.71 -0.06 1.41 16 13 H 0.05 0.80 7.79 -51.93 -0.40 0.40 16 14 O -0.37 -6.90 5.55 -35.23 -0.20 -7.09 16 15 C 0.07 1.47 5.69 37.15 0.21 1.68 16 16 C 0.03 0.73 5.34 -27.89 -0.15 0.58 16 17 C -0.52 -14.79 9.11 -34.44 -0.31 -15.10 16 18 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 19 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 20 N -0.89 -26.80 13.29 55.43 0.74 -26.07 16 21 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 22 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 25 H 0.09 1.13 8.05 -52.49 -0.42 0.71 16 26 H 0.09 1.01 7.83 -52.49 -0.41 0.60 16 27 H 0.10 1.73 4.90 -51.93 -0.25 1.47 16 28 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.08 1.18 6.73 -51.93 -0.35 0.83 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.94 7.88 -51.93 -0.41 0.53 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.03 0.66 7.88 -51.93 -0.41 0.25 16 40 H 0.03 0.67 8.08 -51.93 -0.42 0.25 16 41 H 0.02 0.66 8.14 -51.92 -0.42 0.24 16 42 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 334.70 15.07 5.04 5.04 Total: -1.00 -28.98 334.70 -8.18 -37.17 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -8.07 Total: -1.50 kcal Atomic # 6 Polarization: -23.46 SS G_CDS: -0.67 Total: -24.13 kcal Atomic # 7 Polarization: -26.80 SS G_CDS: 0.74 Total: -26.07 kcal Atomic # 8 Polarization: -6.90 SS G_CDS: -0.20 Total: -7.09 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -28.98 -8.18 -37.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205649479.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.809 kcal (2) G-P(sol) polarization free energy of solvation -28.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds