Wall clock time and date at job start Sun Mar 29 2020 23:56:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86807 * 119.99487 * 2 1 4 4 H 1.48494 * 109.47061 * 269.99976 * 3 2 1 5 5 H 1.48498 * 109.47397 * 30.00274 * 3 2 1 6 6 H 1.48507 * 109.46956 * 150.00316 * 3 2 1 7 7 C 1.37876 * 120.00325 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99752 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00176 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47070 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.46975 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.47241 * 179.97438 * 11 10 9 13 13 C 1.52991 * 109.47210 * 180.02562 * 12 11 10 14 14 O 1.42906 * 109.47271 * 180.02562 * 13 12 11 15 15 C 1.42903 * 114.00235 * 176.51752 * 14 13 12 16 16 C 1.52999 * 109.46775 * 122.49916 * 15 14 13 17 17 C 1.53001 * 117.49963 * 8.74731 * 16 15 14 18 18 C 1.53005 * 117.50053 * 300.08910 * 16 15 14 19 19 C 1.52988 * 109.47220 * 242.50140 * 15 14 13 20 20 C 1.53001 * 117.49918 * 128.52952 * 19 15 14 21 21 C 1.53000 * 117.50518 * 59.86670 * 19 15 14 22 22 H 0.97000 * 120.00341 * 359.97438 * 1 2 3 23 23 H 1.09003 * 109.46890 * 59.99782 * 9 7 2 24 24 H 1.08997 * 109.47130 * 299.99920 * 9 7 2 25 25 H 1.09003 * 109.47476 * 60.00100 * 10 9 7 26 26 H 1.09007 * 109.46952 * 299.99905 * 10 9 7 27 27 H 1.08995 * 109.46997 * 60.00044 * 11 10 9 28 28 H 1.08997 * 109.47126 * 299.99818 * 11 10 9 29 29 H 1.09002 * 109.47010 * 59.99267 * 12 11 10 30 30 H 1.09007 * 109.46899 * 299.99972 * 12 11 10 31 31 H 1.08998 * 109.47654 * 60.00280 * 13 12 11 32 32 H 1.09007 * 109.46962 * 299.99683 * 13 12 11 33 33 H 1.09000 * 109.46722 * 2.50057 * 15 14 13 34 34 H 1.08997 * 115.54611 * 154.42368 * 16 15 14 35 35 H 1.08992 * 117.50088 * 0.02562 * 17 16 15 36 36 H 1.09003 * 117.49522 * 145.02258 * 17 16 15 37 37 H 1.08998 * 117.49891 * 214.98662 * 18 16 15 38 38 H 1.09003 * 117.49413 * 359.97438 * 18 16 15 39 39 H 1.09005 * 115.55203 * 274.19635 * 19 15 14 40 40 H 1.09000 * 117.50199 * 359.97438 * 20 19 15 41 41 H 1.09004 * 117.50195 * 145.02318 * 20 19 15 42 42 H 1.09003 * 117.50339 * 214.97744 * 21 19 15 43 43 H 1.09002 * 117.49526 * 359.97438 * 21 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6528 0.7001 6 1 3.5467 1.4404 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0847 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2455 -3.6619 -0.0005 11 6 1.4806 -4.9870 -0.0012 12 6 2.4749 -6.1499 -0.0018 13 6 1.7100 -7.4749 -0.0031 14 8 2.6387 -8.5611 -0.0031 15 6 2.0261 -9.8497 0.0750 16 6 2.4514 -10.6905 -1.1304 17 6 3.5517 -10.1269 -2.0319 18 6 2.1018 -10.1583 -2.5217 19 6 2.4665 -10.5465 1.3638 20 6 1.3720 -11.1163 2.2684 21 6 2.1344 -9.8572 2.6888 22 1 -0.4850 0.8400 0.0004 23 1 0.6242 -2.5567 -0.8903 24 1 0.6249 -2.5571 0.8897 25 1 2.8722 -3.6042 0.8895 26 1 2.8722 -3.6041 -0.8906 27 1 0.8543 -5.0445 -0.8914 28 1 0.8537 -5.0451 0.8886 29 1 3.1017 -6.0925 0.8881 30 1 3.1015 -6.0917 -0.8919 31 1 1.0837 -7.5321 -0.8933 32 1 1.0831 -7.5334 0.8867 33 1 0.9419 -9.7371 0.0751 34 1 2.4250 -11.7702 -0.9833 35 1 3.9728 -9.1575 -1.7660 36 1 4.2490 -10.8360 -2.4782 37 1 1.8457 -10.8880 -3.2899 38 1 1.5683 -9.2094 -2.5781 39 1 3.4063 -11.0955 1.3039 40 1 0.3381 -10.9944 1.9456 41 1 1.5918 -12.0399 2.8040 42 1 2.8554 -9.9530 3.5006 43 1 1.6024 -8.9070 2.6422 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224368373.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:56:44 Heat of formation + Delta-G solvation = -31.445388 kcal Electronic energy + Delta-G solvation = -18148.719349 eV Core-core repulsion = 15387.448719 eV Total energy + Delta-G solvation = -2761.270630 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.183 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.53876 -36.63621 -36.41327 -34.95264 -32.78524 -30.40073 -27.93854 -26.12588 -23.41143 -22.59954 -22.48071 -21.43068 -21.09108 -20.28102 -19.94236 -17.07712 -16.38052 -16.08415 -15.34651 -15.26304 -15.23267 -14.44174 -14.24024 -13.64101 -13.22641 -12.61512 -12.44172 -12.02312 -11.93774 -11.75375 -11.67941 -11.56923 -11.38348 -11.12490 -10.93393 -10.73864 -10.62491 -10.44583 -10.41840 -10.33972 -10.24786 -10.04294 -9.61295 -9.45259 -9.22818 -8.98214 -8.31173 -5.96390 -3.98425 3.25095 3.34173 3.40096 3.43966 3.62949 3.96036 4.33404 4.49145 4.60357 4.74788 4.80058 4.83558 4.94000 5.03125 5.14795 5.21974 5.26847 5.39208 5.40544 5.48928 5.56511 5.62910 5.68597 5.73627 5.78330 5.80199 5.89603 5.98237 6.00289 6.11600 6.18193 6.31293 6.44401 6.54307 6.84476 6.98192 7.20702 7.25201 7.72580 7.88275 8.04676 8.48024 9.09112 9.65436 11.15022 Molecular weight = 252.18amu Principal moments of inertia in cm(-1) A = 0.032227 B = 0.003096 C = 0.002948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.626606 B = 9041.200264 C = 9497.123199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.519 4.519 8 H 0.054 0.946 9 C 0.020 3.980 10 C -0.109 4.109 11 C -0.116 4.116 12 C -0.115 4.115 13 C 0.062 3.938 14 O -0.373 6.373 15 C 0.148 3.852 16 C -0.166 4.166 17 C -0.163 4.163 18 C -0.180 4.180 19 C -0.159 4.159 20 C -0.179 4.179 21 C -0.169 4.169 22 H 0.260 0.740 23 H 0.014 0.986 24 H 0.014 0.986 25 H 0.047 0.953 26 H 0.047 0.953 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.045 0.955 32 H 0.045 0.955 33 H 0.065 0.935 34 H 0.110 0.890 35 H 0.108 0.892 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.107 0.893 40 H 0.093 0.907 41 H 0.095 0.905 42 H 0.095 0.905 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.183 -24.067 0.309 24.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.558 4.558 8 H 0.073 0.927 9 C -0.017 4.017 10 C -0.147 4.147 11 C -0.153 4.153 12 C -0.153 4.153 13 C -0.015 4.015 14 O -0.292 6.292 15 C 0.090 3.910 16 C -0.184 4.184 17 C -0.200 4.200 18 C -0.217 4.217 19 C -0.178 4.178 20 C -0.216 4.216 21 C -0.206 4.206 22 H 0.069 0.931 23 H 0.033 0.967 24 H 0.033 0.967 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.083 0.917 34 H 0.128 0.872 35 H 0.126 0.874 36 H 0.106 0.894 37 H 0.110 0.890 38 H 0.111 0.889 39 H 0.125 0.875 40 H 0.112 0.888 41 H 0.113 0.887 42 H 0.113 0.887 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 3.228 -23.913 0.302 24.132 hybrid contribution 0.111 0.865 0.016 0.872 sum 3.339 -23.048 0.318 23.291 Atomic orbital electron populations 1.69967 1.06057 1.26509 1.51133 1.25036 0.94849 0.99244 0.95430 0.86607 0.79872 0.83522 0.78082 1.20686 1.21249 1.19871 1.21301 0.93059 0.91207 1.50216 0.92728 1.19109 0.94072 0.91472 0.97081 1.21612 0.99035 0.93756 1.00285 1.21587 0.97737 0.94507 1.01495 1.21585 0.98993 0.91795 1.02931 1.22744 0.92067 0.87036 0.99613 1.87935 1.33741 1.13111 1.94425 1.20980 0.95869 0.83123 0.91016 1.22606 1.05860 0.99080 0.90899 1.22885 0.91339 1.03559 1.02178 1.22943 0.99500 1.02829 0.96418 1.22540 1.00218 1.03691 0.91331 1.23032 0.96867 0.98048 1.03642 1.22861 1.03370 0.96646 0.97700 0.93067 0.96718 0.96718 0.93421 0.93433 0.92499 0.92502 0.91459 0.91515 0.93656 0.93656 0.91719 0.87223 0.87397 0.89369 0.89019 0.88889 0.87457 0.88846 0.88678 0.88692 0.88690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.46 13.29 55.43 0.74 -26.72 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.52 -15.10 9.11 -34.44 -0.31 -15.41 16 8 H 0.05 1.54 7.74 -52.48 -0.41 1.14 16 9 C 0.02 0.52 4.97 -27.89 -0.14 0.38 16 10 C -0.11 -2.30 5.15 -26.73 -0.14 -2.44 16 11 C -0.12 -1.97 5.21 -26.73 -0.14 -2.11 16 12 C -0.12 -1.67 5.58 -26.73 -0.15 -1.82 16 13 C 0.06 0.78 5.63 37.15 0.21 0.99 16 14 O -0.37 -4.68 8.24 -35.23 -0.29 -4.97 16 15 C 0.15 1.53 2.80 -26.74 -0.07 1.46 16 16 C -0.17 -1.57 5.69 -90.62 -0.52 -2.08 16 17 C -0.16 -1.61 9.88 -26.69 -0.26 -1.87 16 18 C -0.18 -1.69 10.19 -26.69 -0.27 -1.97 16 19 C -0.16 -1.51 5.37 -90.63 -0.49 -1.99 16 20 C -0.18 -1.44 10.18 -26.69 -0.27 -1.71 16 21 C -0.17 -1.59 10.16 -26.69 -0.27 -1.86 16 22 H 0.26 7.47 8.31 -40.82 -0.34 7.14 16 23 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 24 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 25 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.05 0.99 8.14 -51.92 -0.42 0.57 16 27 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.07 0.98 8.14 -51.92 -0.42 0.55 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.05 0.55 7.72 -51.92 -0.40 0.15 16 33 H 0.06 0.65 7.36 -51.93 -0.38 0.27 16 34 H 0.11 0.90 8.11 -51.93 -0.42 0.47 16 35 H 0.11 1.25 7.06 -51.93 -0.37 0.88 16 36 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.11 0.99 8.11 -51.93 -0.42 0.57 16 40 H 0.09 0.71 8.05 -51.93 -0.42 0.30 16 41 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 43 H 0.09 0.97 7.72 -51.93 -0.40 0.57 16 LS Contribution 351.96 15.07 5.30 5.30 Total: -1.00 -30.37 351.96 -10.47 -40.84 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: -8.27 Total: -2.52 kcal Atomic # 6 Polarization: -26.00 SS G_CDS: -2.92 Total: -28.93 kcal Atomic # 7 Polarization: -27.46 SS G_CDS: 0.74 Total: -26.72 kcal Atomic # 8 Polarization: -4.68 SS G_CDS: -0.29 Total: -4.97 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.37 -10.47 -40.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224368373.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.395 kcal (2) G-P(sol) polarization free energy of solvation -30.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds