Wall clock time and date at job start Sun Mar 29 2020 23:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31588 * 1 3 3 Si 1.86799 * 119.99766 * 2 1 4 4 H 1.48497 * 109.47048 * 269.99443 * 3 2 1 5 5 H 1.48500 * 109.47187 * 29.99631 * 3 2 1 6 6 H 1.48500 * 109.46879 * 149.99730 * 3 2 1 7 7 C 1.38633 * 120.00412 * 179.97438 * 2 1 3 8 8 H 1.08011 * 119.99681 * 0.02562 * 7 2 1 9 9 O 1.34925 * 120.00624 * 180.02562 * 7 2 1 10 10 C 1.42896 * 117.00223 * 179.97438 * 9 7 2 11 11 H 1.08996 * 109.47405 * 330.00363 * 10 9 7 12 12 C 1.52997 * 109.46906 * 90.00197 * 10 9 7 13 13 C 1.53005 * 109.47452 * 59.99710 * 12 10 9 14 14 C 1.52996 * 109.46543 * 59.99968 * 13 12 10 15 15 C 1.53005 * 109.47571 * 299.99799 * 14 13 12 16 16 C 1.52996 * 109.46885 * 209.99931 * 10 9 7 17 17 H 1.09001 * 109.46993 * 180.02562 * 16 10 9 18 18 C 1.53001 * 109.47486 * 60.00407 * 16 10 9 19 19 C 1.53000 * 109.46886 * 59.99437 * 18 16 10 20 20 C 1.52997 * 109.47060 * 180.02562 * 19 18 16 21 21 C 1.53006 * 109.47127 * 300.00449 * 20 19 18 22 22 C 1.52997 * 109.47164 * 59.99836 * 21 20 19 23 23 C 1.52996 * 109.47302 * 179.97438 * 18 16 10 24 24 H 0.96996 * 119.99561 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47153 * 299.99718 * 12 10 9 26 26 H 1.09001 * 109.47289 * 179.97438 * 12 10 9 27 27 H 1.09001 * 109.46812 * 300.00216 * 13 12 10 28 28 H 1.09000 * 109.47360 * 179.97438 * 13 12 10 29 29 H 1.09004 * 109.46785 * 180.02562 * 14 13 12 30 30 H 1.09001 * 109.47364 * 60.00587 * 14 13 12 31 31 H 1.08992 * 109.46876 * 300.00648 * 15 14 13 32 32 H 1.09001 * 109.46735 * 180.02562 * 15 14 13 33 33 H 1.09001 * 109.46652 * 299.99782 * 18 16 10 34 34 H 1.09002 * 109.47398 * 300.00496 * 19 18 16 35 35 H 1.09001 * 109.47194 * 60.00677 * 19 18 16 36 36 H 1.08998 * 109.47533 * 59.99948 * 20 19 18 37 37 H 1.08996 * 109.47853 * 180.02562 * 20 19 18 38 38 H 1.09001 * 109.47002 * 299.99574 * 21 20 19 39 39 H 1.09000 * 109.47050 * 179.97438 * 21 20 19 40 40 H 1.09002 * 109.47045 * 180.02562 * 22 21 20 41 41 H 1.09001 * 109.47375 * 59.99966 * 22 21 20 42 42 H 1.08992 * 109.47554 * 299.99692 * 23 18 16 43 43 H 1.09004 * 109.47108 * 59.99942 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2498 1.6178 0.0000 4 1 2.4974 2.0464 -1.4001 5 1 1.4472 2.6527 0.7000 6 1 3.5473 1.4402 0.7001 7 6 2.0091 -1.2005 0.0005 8 1 1.4691 -2.1360 0.0005 9 8 3.3584 -1.2006 0.0011 10 6 4.0071 -2.4738 0.0022 11 1 3.3789 -3.2013 0.5162 12 6 4.2392 -2.9291 -1.4399 13 6 5.1210 -1.9080 -2.1616 14 6 6.4653 -1.7948 -1.4398 15 6 6.2333 -1.3394 0.0023 16 6 5.3514 -2.3605 0.7238 17 1 5.8465 -3.3316 0.7243 18 6 5.1194 -1.9052 2.1660 19 6 4.2376 -2.9263 2.8875 20 6 4.0050 -2.4708 4.3294 21 6 5.3492 -2.3571 5.0515 22 6 6.2309 -1.3360 4.3299 23 6 6.4637 -1.7926 2.8878 24 1 -0.4849 0.8400 -0.0004 25 1 3.2815 -3.0098 -1.9541 26 1 4.7345 -3.9001 -1.4392 27 1 4.6261 -0.9368 -2.1624 28 1 5.2868 -2.2326 -3.1888 29 1 7.0934 -1.0670 -1.9537 30 1 6.9602 -2.7660 -1.4391 31 1 5.7384 -0.3683 0.0014 32 1 7.1911 -1.2584 0.5163 33 1 4.6245 -0.9340 2.1651 34 1 3.2798 -3.0070 2.3733 35 1 4.7324 -3.8975 2.8884 36 1 3.5100 -1.4997 4.3284 37 1 3.3771 -3.1983 4.8437 38 1 5.8442 -3.3282 5.0527 39 1 5.1835 -2.0321 6.0786 40 1 7.1887 -1.2553 4.8440 41 1 5.7359 -0.3648 4.3287 42 1 6.9582 -2.7639 2.8887 43 1 7.0922 -1.0653 2.3738 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224380008.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:57:11 Heat of formation + Delta-G solvation = -85.068044 kcal Electronic energy + Delta-G solvation = -20444.900002 eV Core-core repulsion = 17681.304119 eV Total energy + Delta-G solvation = -2763.595882 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.183 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.47068 -37.27371 -35.04643 -32.20487 -31.70746 -30.56539 -29.32444 -27.76174 -24.24645 -22.95293 -22.73511 -21.04938 -20.44691 -19.27460 -18.80184 -17.52761 -15.55992 -15.20971 -14.68683 -14.20123 -14.09331 -13.92800 -13.76167 -13.24295 -12.92232 -12.64726 -12.43377 -12.20492 -11.89872 -11.74189 -11.55846 -11.38270 -11.14321 -10.94201 -10.82737 -10.78684 -10.42829 -10.38429 -10.18112 -9.99590 -9.95195 -9.88643 -9.66158 -9.26746 -9.08972 -8.89303 -8.06081 -5.92010 -3.56290 3.44888 3.48533 3.64206 4.61838 4.92724 4.95629 5.05041 5.18023 5.31678 5.32598 5.46727 5.51792 5.55764 5.61700 5.76797 5.82348 5.83027 5.84965 5.90035 5.93013 5.98136 6.06465 6.13439 6.17211 6.21663 6.26626 6.35918 6.40102 6.41166 6.49196 6.51377 6.56916 6.60637 6.76269 6.77487 6.86998 6.91898 6.95986 7.06280 7.16007 8.00601 8.45678 9.49681 10.08449 11.21607 Molecular weight = 252.18amu Principal moments of inertia in cm(-1) A = 0.015970 B = 0.009779 C = 0.007504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.913373 B = 2862.484734 C = 3730.635367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.041 3.959 3 Si 0.900 3.100 4 H -0.284 1.284 5 H -0.295 1.295 6 H -0.263 1.263 7 C -0.344 4.344 8 H 0.075 0.925 9 O -0.315 6.315 10 C 0.113 3.887 11 H 0.047 0.953 12 C -0.138 4.138 13 C -0.112 4.112 14 C -0.114 4.114 15 C -0.111 4.111 16 C -0.073 4.073 17 H 0.064 0.936 18 C -0.077 4.077 19 C -0.113 4.113 20 C -0.119 4.119 21 C -0.116 4.116 22 C -0.119 4.119 23 C -0.114 4.114 24 H 0.266 0.734 25 H 0.063 0.937 26 H 0.050 0.950 27 H 0.072 0.928 28 H 0.046 0.954 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.071 0.929 32 H 0.052 0.948 33 H 0.083 0.917 34 H 0.072 0.928 35 H 0.050 0.950 36 H 0.064 0.936 37 H 0.055 0.945 38 H 0.056 0.944 39 H 0.053 0.947 40 H 0.053 0.947 41 H 0.061 0.939 42 H 0.054 0.946 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.542 -5.080 4.603 15.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.155 4.155 3 Si 0.729 3.271 4 H -0.211 1.211 5 H -0.221 1.221 6 H -0.188 1.188 7 C -0.423 4.423 8 H 0.093 0.907 9 O -0.231 6.231 10 C 0.054 3.946 11 H 0.065 0.935 12 C -0.176 4.176 13 C -0.149 4.149 14 C -0.152 4.152 15 C -0.148 4.148 16 C -0.092 4.092 17 H 0.083 0.917 18 C -0.096 4.096 19 C -0.150 4.150 20 C -0.156 4.156 21 C -0.154 4.154 22 C -0.157 4.157 23 C -0.152 4.152 24 H 0.076 0.924 25 H 0.082 0.918 26 H 0.069 0.931 27 H 0.091 0.909 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.090 0.910 32 H 0.071 0.929 33 H 0.101 0.899 34 H 0.091 0.909 35 H 0.069 0.931 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.080 0.920 42 H 0.073 0.927 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 13.540 -4.803 4.610 15.088 hybrid contribution 0.091 0.548 -0.105 0.565 sum 13.631 -4.255 4.505 14.973 Atomic orbital electron populations 1.69690 1.05326 1.26868 1.54559 1.24253 0.94736 0.97917 0.98548 0.86250 0.80100 0.82780 0.77999 1.21058 1.22130 1.18782 1.20412 0.78899 0.94668 1.48274 0.90720 1.85264 1.19769 1.24865 1.93170 1.21671 0.92161 0.87882 0.92920 0.93521 1.22035 0.99762 0.97332 0.98493 1.21376 0.95301 1.01002 0.97223 1.21498 0.97249 1.00089 0.96319 1.21537 0.98463 1.00201 0.94605 1.21234 0.95591 0.98146 0.94221 0.91737 1.21086 0.94835 1.00567 0.93092 1.21588 1.00640 0.97749 0.95064 1.21514 0.96427 1.01675 0.96019 1.21523 0.96450 0.99040 0.98382 1.21540 0.98944 0.99150 0.96042 1.21657 0.97766 1.00690 0.95045 0.92393 0.91810 0.93150 0.90932 0.93496 0.92951 0.93011 0.91027 0.92899 0.89880 0.90908 0.93094 0.91759 0.92616 0.92538 0.92773 0.92820 0.92047 0.92695 0.92109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.45 13.97 55.48 0.77 -27.67 16 2 C 0.04 1.22 5.49 -17.51 -0.10 1.13 16 3 Si 0.90 23.19 28.62 -169.99 -4.86 18.32 16 4 H -0.28 -7.27 7.11 56.52 0.40 -6.87 16 5 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 6 H -0.26 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.34 -9.77 10.23 30.88 0.32 -9.45 16 8 H 0.08 2.25 7.88 -52.48 -0.41 1.84 16 9 O -0.32 -7.76 6.23 -16.50 -0.10 -7.86 16 10 C 0.11 2.25 2.04 -26.73 -0.05 2.19 16 11 H 0.05 0.97 6.09 -51.93 -0.32 0.65 16 12 C -0.14 -2.52 5.63 -26.73 -0.15 -2.67 16 13 C -0.11 -1.91 5.78 -26.73 -0.15 -2.07 16 14 C -0.11 -1.70 5.92 -26.73 -0.16 -1.86 16 15 C -0.11 -1.78 4.71 -26.73 -0.13 -1.90 16 16 C -0.07 -1.22 1.61 -90.62 -0.15 -1.36 16 17 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 18 C -0.08 -1.27 1.63 -90.62 -0.15 -1.42 16 19 C -0.11 -1.80 4.85 -26.73 -0.13 -1.93 16 20 C -0.12 -1.72 5.92 -26.73 -0.16 -1.88 16 21 C -0.12 -1.44 5.92 -26.73 -0.16 -1.60 16 22 C -0.12 -1.51 5.93 -26.71 -0.16 -1.67 16 23 C -0.11 -1.55 4.85 -26.71 -0.13 -1.68 16 24 H 0.27 7.80 8.31 -40.82 -0.34 7.46 16 25 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 26 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.07 1.45 7.68 -51.93 -0.40 1.05 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.07 1.35 7.68 -51.93 -0.40 0.95 16 32 H 0.05 0.74 6.43 -51.93 -0.33 0.40 16 33 H 0.08 1.66 7.68 -51.93 -0.40 1.26 16 34 H 0.07 1.35 6.43 -51.93 -0.33 1.01 16 35 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.06 0.81 6.43 -51.93 -0.33 0.47 16 LS Contribution 319.24 15.07 4.81 4.81 Total: -1.00 -29.77 319.24 -8.81 -38.58 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -7.98 Total: -0.01 kcal Atomic # 6 Polarization: -24.72 SS G_CDS: -1.45 Total: -26.17 kcal Atomic # 7 Polarization: -28.45 SS G_CDS: 0.77 Total: -27.67 kcal Atomic # 8 Polarization: -7.76 SS G_CDS: -0.10 Total: -7.86 kcal Atomic # 14 Polarization: 23.19 SS G_CDS: -4.86 Total: 18.32 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.77 -8.81 -38.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224380008.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.488 kcal (2) G-P(sol) polarization free energy of solvation -29.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds