Wall clock time and date at job start Sun Mar 29 2020 23:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31588 * 1 3 3 Si 1.86799 * 119.99766 * 2 1 4 4 H 1.48497 * 109.47048 * 269.99443 * 3 2 1 5 5 H 1.48500 * 109.47187 * 29.99631 * 3 2 1 6 6 H 1.48500 * 109.46879 * 149.99730 * 3 2 1 7 7 C 1.38633 * 120.00412 * 179.97438 * 2 1 3 8 8 H 1.08011 * 119.99681 * 0.02562 * 7 2 1 9 9 O 1.34925 * 120.00624 * 180.02562 * 7 2 1 10 10 C 1.42896 * 117.00223 * 179.97438 * 9 7 2 11 11 H 1.08996 * 109.47405 * 330.00363 * 10 9 7 12 12 C 1.52997 * 109.46906 * 90.00197 * 10 9 7 13 13 C 1.53005 * 109.47452 * 59.99710 * 12 10 9 14 14 C 1.52996 * 109.46543 * 59.99968 * 13 12 10 15 15 C 1.53005 * 109.47571 * 299.99799 * 14 13 12 16 16 C 1.52996 * 109.46885 * 209.99931 * 10 9 7 17 17 H 1.09001 * 109.46993 * 180.02562 * 16 10 9 18 18 C 1.53001 * 109.47486 * 60.00407 * 16 10 9 19 19 C 1.53000 * 109.46886 * 59.99437 * 18 16 10 20 20 C 1.52997 * 109.47060 * 180.02562 * 19 18 16 21 21 C 1.53006 * 109.47127 * 300.00449 * 20 19 18 22 22 C 1.52997 * 109.47164 * 59.99836 * 21 20 19 23 23 C 1.52996 * 109.47302 * 179.97438 * 18 16 10 24 24 H 0.96996 * 119.99561 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47153 * 299.99718 * 12 10 9 26 26 H 1.09001 * 109.47289 * 179.97438 * 12 10 9 27 27 H 1.09001 * 109.46812 * 300.00216 * 13 12 10 28 28 H 1.09000 * 109.47360 * 179.97438 * 13 12 10 29 29 H 1.09004 * 109.46785 * 180.02562 * 14 13 12 30 30 H 1.09001 * 109.47364 * 60.00587 * 14 13 12 31 31 H 1.08992 * 109.46876 * 300.00648 * 15 14 13 32 32 H 1.09001 * 109.46735 * 180.02562 * 15 14 13 33 33 H 1.09001 * 109.46652 * 299.99782 * 18 16 10 34 34 H 1.09002 * 109.47398 * 300.00496 * 19 18 16 35 35 H 1.09001 * 109.47194 * 60.00677 * 19 18 16 36 36 H 1.08998 * 109.47533 * 59.99948 * 20 19 18 37 37 H 1.08996 * 109.47853 * 180.02562 * 20 19 18 38 38 H 1.09001 * 109.47002 * 299.99574 * 21 20 19 39 39 H 1.09000 * 109.47050 * 179.97438 * 21 20 19 40 40 H 1.09002 * 109.47045 * 180.02562 * 22 21 20 41 41 H 1.09001 * 109.47375 * 59.99966 * 22 21 20 42 42 H 1.08992 * 109.47554 * 299.99692 * 23 18 16 43 43 H 1.09004 * 109.47108 * 59.99942 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2498 1.6178 0.0000 4 1 2.4974 2.0464 -1.4001 5 1 1.4472 2.6527 0.7000 6 1 3.5473 1.4402 0.7001 7 6 2.0091 -1.2005 0.0005 8 1 1.4691 -2.1360 0.0005 9 8 3.3584 -1.2006 0.0011 10 6 4.0071 -2.4738 0.0022 11 1 3.3789 -3.2013 0.5162 12 6 4.2392 -2.9291 -1.4399 13 6 5.1210 -1.9080 -2.1616 14 6 6.4653 -1.7948 -1.4398 15 6 6.2333 -1.3394 0.0023 16 6 5.3514 -2.3605 0.7238 17 1 5.8465 -3.3316 0.7243 18 6 5.1194 -1.9052 2.1660 19 6 4.2376 -2.9263 2.8875 20 6 4.0050 -2.4708 4.3294 21 6 5.3492 -2.3571 5.0515 22 6 6.2309 -1.3360 4.3299 23 6 6.4637 -1.7926 2.8878 24 1 -0.4849 0.8400 -0.0004 25 1 3.2815 -3.0098 -1.9541 26 1 4.7345 -3.9001 -1.4392 27 1 4.6261 -0.9368 -2.1624 28 1 5.2868 -2.2326 -3.1888 29 1 7.0934 -1.0670 -1.9537 30 1 6.9602 -2.7660 -1.4391 31 1 5.7384 -0.3683 0.0014 32 1 7.1911 -1.2584 0.5163 33 1 4.6245 -0.9340 2.1651 34 1 3.2798 -3.0070 2.3733 35 1 4.7324 -3.8975 2.8884 36 1 3.5100 -1.4997 4.3284 37 1 3.3771 -3.1983 4.8437 38 1 5.8442 -3.3282 5.0527 39 1 5.1835 -2.0321 6.0786 40 1 7.1887 -1.2553 4.8440 41 1 5.7359 -0.3648 4.3287 42 1 6.9582 -2.7639 2.8887 43 1 7.0922 -1.0653 2.3738 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224380008.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:57:11 Heat of formation + Delta-G solvation = -100.427110 kcal Electronic energy + Delta-G solvation = -20445.566021 eV Core-core repulsion = 17681.304119 eV Total energy + Delta-G solvation = -2764.261901 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.183 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.87628 -38.64335 -36.78696 -33.96288 -33.41933 -31.78365 -30.72707 -29.09410 -26.41483 -24.19385 -24.03973 -22.35977 -21.68679 -20.55331 -20.27541 -19.67681 -17.20266 -16.87177 -16.12982 -15.72133 -15.58615 -15.23801 -14.98773 -14.69042 -14.43693 -14.18244 -13.99100 -13.85048 -13.34729 -13.13516 -13.03846 -12.77005 -12.74255 -12.61480 -12.19380 -12.03059 -11.95323 -11.83182 -11.65184 -11.60226 -11.32052 -11.18586 -11.11854 -11.01224 -10.60222 -10.37276 -10.15023 -8.22649 -5.86765 1.34146 1.36790 1.56061 2.43660 3.11155 3.46904 3.73527 3.85093 3.91789 4.05604 4.13789 4.15564 4.32972 4.34092 4.51950 4.56253 4.61709 4.65621 4.68736 4.70771 4.71885 4.81658 4.86545 4.90049 4.98456 5.05877 5.08772 5.15900 5.21426 5.29123 5.31078 5.35348 5.38751 5.42950 5.47250 5.50100 5.55896 5.63929 5.66672 5.68803 5.79906 6.23441 7.19320 7.95516 8.94636 Molecular weight = 252.18amu Principal moments of inertia in cm(-1) A = 0.015970 B = 0.009779 C = 0.007504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.913373 B = 2862.484734 C = 3730.635367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.961 5.961 2 C -0.018 4.018 3 Si 0.964 3.036 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.261 1.261 7 C -0.329 4.329 8 H 0.041 0.959 9 O -0.324 6.324 10 C 0.099 3.901 11 H 0.030 0.970 12 C -0.136 4.136 13 C -0.112 4.112 14 C -0.108 4.108 15 C -0.109 4.109 16 C -0.068 4.068 17 H 0.096 0.904 18 C -0.076 4.076 19 C -0.111 4.111 20 C -0.121 4.121 21 C -0.110 4.110 22 C -0.120 4.120 23 C -0.107 4.107 24 H 0.269 0.731 25 H 0.033 0.967 26 H 0.085 0.915 27 H 0.034 0.966 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.034 0.966 32 H 0.083 0.917 33 H 0.036 0.964 34 H 0.031 0.969 35 H 0.075 0.925 36 H 0.036 0.964 37 H 0.063 0.937 38 H 0.075 0.925 39 H 0.066 0.934 40 H 0.080 0.920 41 H 0.042 0.958 42 H 0.078 0.922 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.392 -5.834 5.128 19.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.610 5.610 2 C -0.209 4.209 3 Si 0.790 3.210 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.185 1.185 7 C -0.408 4.408 8 H 0.059 0.941 9 O -0.240 6.240 10 C 0.041 3.959 11 H 0.048 0.952 12 C -0.174 4.174 13 C -0.149 4.149 14 C -0.145 4.145 15 C -0.147 4.147 16 C -0.086 4.086 17 H 0.114 0.886 18 C -0.094 4.094 19 C -0.148 4.148 20 C -0.158 4.158 21 C -0.147 4.147 22 C -0.158 4.158 23 C -0.144 4.144 24 H 0.078 0.922 25 H 0.052 0.948 26 H 0.103 0.897 27 H 0.053 0.947 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.099 0.901 31 H 0.053 0.947 32 H 0.102 0.898 33 H 0.055 0.945 34 H 0.050 0.950 35 H 0.093 0.907 36 H 0.055 0.945 37 H 0.082 0.918 38 H 0.093 0.907 39 H 0.085 0.915 40 H 0.098 0.902 41 H 0.061 0.939 42 H 0.096 0.904 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 17.409 -5.571 5.133 18.986 hybrid contribution -1.138 0.647 -0.274 1.338 sum 16.271 -4.924 4.859 17.680 Atomic orbital electron populations 1.69805 1.06846 1.27822 1.56500 1.25035 0.95583 1.01375 0.98943 0.85259 0.78800 0.78710 0.78216 1.20372 1.21315 1.18503 1.20306 0.80602 0.93325 1.46552 0.94128 1.85227 1.17428 1.28006 1.93295 1.22077 0.93487 0.85562 0.94746 0.95220 1.22008 0.99140 0.99524 0.96737 1.21377 0.96212 0.98478 0.98871 1.21491 0.95905 1.02160 0.94979 1.21538 0.99187 0.97976 0.95962 1.21260 0.93487 1.00066 0.93781 0.88582 1.21021 0.96507 0.98110 0.93794 1.21542 0.98821 0.98983 0.95463 1.21524 0.98266 1.00331 0.95716 1.21493 0.94680 1.00020 0.98550 1.21565 1.00081 0.98248 0.95900 1.21611 0.95592 1.02162 0.95075 0.92208 0.94798 0.89664 0.94738 0.91265 0.91261 0.90095 0.94686 0.89813 0.94547 0.94995 0.90675 0.94512 0.91818 0.90659 0.91487 0.90169 0.93903 0.90361 0.91526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -62.05 13.97 21.61 0.30 -61.75 16 2 C -0.02 -1.09 5.49 84.82 0.47 -0.62 16 3 Si 0.96 49.53 28.62 68.60 1.96 51.49 16 4 H -0.28 -13.87 7.11 99.48 0.71 -13.17 16 5 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 6 H -0.26 -13.12 7.11 99.48 0.71 -12.41 16 7 C -0.33 -19.73 10.23 67.91 0.69 -19.04 16 8 H 0.04 2.65 7.88 -2.90 -0.02 2.63 16 9 O -0.32 -16.62 6.23 -81.94 -0.51 -17.13 16 10 C 0.10 4.03 2.04 30.59 0.06 4.09 16 11 H 0.03 1.29 6.09 -2.39 -0.01 1.28 16 12 C -0.14 -4.89 5.63 30.60 0.17 -4.72 16 13 C -0.11 -3.67 5.78 30.59 0.18 -3.49 16 14 C -0.11 -2.83 5.92 30.59 0.18 -2.65 16 15 C -0.11 -3.23 4.71 30.60 0.14 -3.09 16 16 C -0.07 -2.13 1.61 -10.79 -0.02 -2.14 16 17 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 18 C -0.08 -2.43 1.63 -10.79 -0.02 -2.45 16 19 C -0.11 -3.51 4.85 30.59 0.15 -3.36 16 20 C -0.12 -3.48 5.92 30.60 0.18 -3.30 16 21 C -0.11 -2.43 5.92 30.60 0.18 -2.25 16 22 C -0.12 -2.72 5.93 30.61 0.18 -2.54 16 23 C -0.11 -2.55 4.85 30.61 0.15 -2.41 16 24 H 0.27 16.31 8.31 -92.71 -0.77 15.54 16 25 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 27 H 0.03 1.38 7.68 -2.39 -0.02 1.36 16 28 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 30 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.03 1.29 7.68 -2.39 -0.02 1.27 16 32 H 0.08 1.98 6.43 -2.39 -0.02 1.97 16 33 H 0.04 1.50 7.68 -2.39 -0.02 1.48 16 34 H 0.03 1.24 6.43 -2.39 -0.02 1.23 16 35 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.07 1.52 6.43 -2.38 -0.02 1.51 16 Total: -1.00 -68.52 319.24 5.40 -63.13 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: 0.94 Total: 12.22 kcal Atomic # 6 Polarization: -50.66 SS G_CDS: 2.70 Total: -47.96 kcal Atomic # 7 Polarization: -62.05 SS G_CDS: 0.30 Total: -61.75 kcal Atomic # 8 Polarization: -16.62 SS G_CDS: -0.51 Total: -17.13 kcal Atomic # 14 Polarization: 49.53 SS G_CDS: 1.96 Total: 51.49 kcal Total: -68.52 5.40 -63.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224380008.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.300 kcal (2) G-P(sol) polarization free energy of solvation -68.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds