Wall clock time and date at job start Sun Mar 29 2020 23:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31578 * 1 3 3 Si 1.86793 * 120.00301 * 2 1 4 4 H 1.48501 * 109.47317 * 240.00078 * 3 2 1 5 5 H 1.48504 * 109.47232 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46995 * 120.00029 * 3 2 1 7 7 C 1.38635 * 119.99501 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99634 * 179.97438 * 7 2 1 9 9 O 1.34923 * 120.00650 * 0.02562 * 7 2 1 10 10 C 1.42898 * 117.00540 * 180.02562 * 9 7 2 11 11 H 1.09003 * 109.46570 * 329.99527 * 10 9 7 12 12 C 1.52996 * 109.47638 * 89.99515 * 10 9 7 13 13 C 1.52991 * 109.47299 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.47507 * 300.00054 * 13 12 10 15 15 C 1.53006 * 109.46884 * 59.99686 * 14 13 12 16 16 C 1.52991 * 109.47305 * 300.00437 * 15 14 13 17 17 H 1.09007 * 109.47185 * 300.00077 * 16 15 14 18 18 C 1.52996 * 109.47299 * 179.97438 * 16 15 14 19 19 C 1.53008 * 109.47219 * 65.47899 * 18 16 15 20 20 C 1.52997 * 109.47086 * 180.02562 * 19 18 16 21 21 C 1.52997 * 109.47457 * 59.99624 * 20 19 18 22 22 C 1.52997 * 109.47232 * 299.99930 * 21 20 19 23 23 C 1.52996 * 109.46975 * 60.00237 * 22 21 20 24 24 H 0.97001 * 119.99970 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.47190 * 300.00777 * 12 10 9 26 26 H 1.09007 * 109.47065 * 59.99846 * 12 10 9 27 27 H 1.09003 * 109.47439 * 60.00376 * 13 12 10 28 28 H 1.09002 * 109.47017 * 180.02562 * 13 12 10 29 29 H 1.09000 * 109.47418 * 300.00256 * 14 13 12 30 30 H 1.09002 * 109.47671 * 179.97438 * 14 13 12 31 31 H 1.08999 * 109.46693 * 179.97438 * 15 14 13 32 32 H 1.09003 * 109.46564 * 60.00595 * 15 14 13 33 33 H 1.09001 * 109.47367 * 185.47506 * 18 16 15 34 34 H 1.09001 * 109.46630 * 300.00058 * 19 18 16 35 35 H 1.09000 * 109.47188 * 60.00209 * 19 18 16 36 36 H 1.09001 * 109.46989 * 299.99295 * 20 19 18 37 37 H 1.09000 * 109.47058 * 180.02562 * 20 19 18 38 38 H 1.09002 * 109.47153 * 179.97438 * 21 20 19 39 39 H 1.09001 * 109.46832 * 60.00130 * 21 20 19 40 40 H 1.09001 * 109.46922 * 300.00149 * 22 21 20 41 41 H 1.09000 * 109.47140 * 179.97438 * 22 21 20 42 42 H 1.08996 * 109.47261 * 180.02562 * 23 22 21 43 43 H 1.08992 * 109.47554 * 59.99633 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6176 0.0000 4 1 3.1036 1.6963 -1.2125 5 1 1.2849 2.7464 0.0006 6 1 3.1036 1.6962 1.2125 7 6 2.0088 -1.2007 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3343 -2.3692 -0.0016 10 6 2.1125 -3.5677 -0.0015 11 1 3.0571 -3.3874 -0.5146 12 6 2.3892 -3.9961 1.4409 13 6 3.2219 -5.2796 1.4409 14 6 2.4519 -6.3871 0.7188 15 6 2.1751 -5.9586 -0.7237 16 6 1.3425 -4.6751 -0.7237 17 1 0.3977 -4.8549 -0.2104 18 6 1.0662 -4.2464 -2.1661 19 6 0.1804 -5.2911 -2.8480 20 6 -0.0953 -4.8626 -4.2907 21 6 1.2282 -4.7428 -5.0489 22 6 2.1138 -3.6981 -4.3671 23 6 2.3897 -4.1266 -2.9245 24 1 -0.4850 0.8401 0.0004 25 1 2.9374 -3.2069 1.9556 26 1 1.4445 -4.1762 1.9541 27 1 4.1666 -5.0999 0.9277 28 1 3.4186 -5.5850 2.4686 29 1 1.5072 -6.5669 1.2320 30 1 3.0453 -7.3014 0.7184 31 1 1.6269 -6.7479 -1.2382 32 1 3.1198 -5.7789 -1.2369 33 1 0.5577 -3.2823 -2.1676 34 1 0.6890 -6.2552 -2.8466 35 1 -0.7623 -5.3767 -2.3076 36 1 -0.6037 -3.8985 -4.2924 37 1 -0.7267 -5.6067 -4.7763 38 1 1.0316 -4.4380 -6.0768 39 1 1.7365 -5.7070 -5.0472 40 1 1.6054 -2.7339 -4.3689 41 1 3.0569 -3.6130 -4.9071 42 1 3.0203 -3.3821 -2.4386 43 1 2.8979 -5.0907 -2.9227 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224380010.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:57:14 Heat of formation + Delta-G solvation = -85.423365 kcal Electronic energy + Delta-G solvation = -20227.988750 eV Core-core repulsion = 17464.377460 eV Total energy + Delta-G solvation = -2763.611290 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.183 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.46310 -37.04044 -35.20119 -32.16983 -31.57413 -30.36829 -29.10323 -27.53151 -24.38448 -23.08086 -22.41539 -21.54584 -20.35102 -19.49866 -18.30755 -17.36479 -15.63288 -15.07422 -14.31366 -14.16391 -13.94836 -13.88576 -13.85013 -13.54686 -13.20108 -12.61585 -12.34042 -12.14710 -11.84329 -11.67413 -11.44580 -11.25586 -11.08858 -10.94411 -10.73154 -10.58492 -10.47514 -10.42556 -10.32361 -10.21505 -9.85218 -9.74176 -9.51512 -9.25697 -9.12700 -8.78754 -7.86152 -5.87164 -3.48615 3.34550 3.37024 3.39496 4.36348 5.01752 5.06325 5.11277 5.19940 5.26666 5.30961 5.46126 5.55855 5.62363 5.74179 5.79293 5.85369 5.91254 5.94505 5.95628 5.99216 6.02701 6.09120 6.11585 6.18831 6.22865 6.31799 6.39202 6.46359 6.49294 6.51818 6.56891 6.62840 6.65600 6.73157 6.79164 6.85715 6.99430 7.10449 7.19174 7.27254 7.54304 8.51237 9.56958 10.28890 11.33832 Molecular weight = 252.18amu Principal moments of inertia in cm(-1) A = 0.015933 B = 0.008604 C = 0.006319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.965398 B = 3253.643098 C = 4429.697270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.022 3.978 3 Si 0.917 3.083 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.280 1.280 7 C -0.351 4.351 8 H 0.058 0.942 9 O -0.283 6.283 10 C 0.105 3.895 11 H 0.038 0.962 12 C -0.140 4.140 13 C -0.115 4.115 14 C -0.118 4.118 15 C -0.113 4.113 16 C -0.073 4.073 17 H 0.068 0.932 18 C -0.077 4.077 19 C -0.113 4.113 20 C -0.119 4.119 21 C -0.115 4.115 22 C -0.120 4.120 23 C -0.112 4.112 24 H 0.256 0.744 25 H 0.060 0.940 26 H 0.059 0.941 27 H 0.055 0.945 28 H 0.052 0.948 29 H 0.059 0.941 30 H 0.052 0.948 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.089 0.911 34 H 0.055 0.945 35 H 0.057 0.943 36 H 0.062 0.938 37 H 0.052 0.948 38 H 0.053 0.947 39 H 0.055 0.945 40 H 0.064 0.936 41 H 0.052 0.948 42 H 0.065 0.935 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.024 -11.948 -5.148 13.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.175 4.175 3 Si 0.745 3.255 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.206 1.206 7 C -0.430 4.430 8 H 0.075 0.925 9 O -0.198 6.198 10 C 0.046 3.954 11 H 0.056 0.944 12 C -0.178 4.178 13 C -0.153 4.153 14 C -0.156 4.156 15 C -0.151 4.151 16 C -0.092 4.092 17 H 0.086 0.914 18 C -0.095 4.095 19 C -0.150 4.150 20 C -0.157 4.157 21 C -0.153 4.153 22 C -0.157 4.157 23 C -0.150 4.150 24 H 0.066 0.934 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.108 0.892 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.083 0.917 41 H 0.071 0.929 42 H 0.084 0.916 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.684 -11.832 -5.151 13.420 hybrid contribution 0.738 0.904 0.122 1.174 sum 4.422 -10.928 -5.029 12.816 Atomic orbital electron populations 1.69999 1.05244 1.25687 1.52371 1.24866 0.95556 0.97437 0.99676 0.86161 0.78621 0.82411 0.78304 1.20518 1.20997 1.20566 1.20760 0.89851 0.82958 1.49471 0.92452 1.85666 1.31523 1.10084 1.92486 1.21728 0.93717 0.87475 0.92485 0.94387 1.22100 0.99696 0.96041 0.99954 1.21507 0.98701 0.95750 0.99360 1.21546 1.00064 0.97494 0.96476 1.21665 1.00155 0.97229 0.96025 1.21144 0.98838 0.93611 0.95598 0.91382 1.21063 0.95513 0.99906 0.93028 1.21621 0.99604 0.98655 0.95130 1.21524 0.96879 1.01304 0.95956 1.21502 0.96353 0.99094 0.98308 1.21529 0.98878 0.99073 0.96239 1.21628 0.97915 1.00678 0.94730 0.93395 0.92171 0.92182 0.92619 0.92888 0.92268 0.92896 0.92213 0.91974 0.89225 0.92599 0.92433 0.91889 0.92898 0.92855 0.92638 0.91735 0.92880 0.91616 0.92722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.79 13.67 55.48 0.76 -27.03 16 2 C 0.02 0.66 5.49 -17.51 -0.10 0.56 16 3 Si 0.92 22.26 29.55 -169.99 -5.02 17.24 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 5 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.35 -10.13 9.77 30.88 0.30 -9.83 16 8 H 0.06 1.59 7.64 -52.48 -0.40 1.18 16 9 O -0.28 -7.84 8.66 -16.49 -0.14 -7.98 16 10 C 0.11 2.26 1.85 -26.73 -0.05 2.21 16 11 H 0.04 0.83 6.24 -51.93 -0.32 0.50 16 12 C -0.14 -2.71 5.54 -26.74 -0.15 -2.86 16 13 C -0.12 -1.75 5.92 -26.74 -0.16 -1.91 16 14 C -0.12 -1.63 5.92 -26.73 -0.16 -1.78 16 15 C -0.11 -1.65 4.46 -26.73 -0.12 -1.76 16 16 C -0.07 -1.33 1.70 -90.63 -0.15 -1.48 16 17 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 18 C -0.08 -1.36 1.89 -90.61 -0.17 -1.53 16 19 C -0.11 -1.67 4.97 -26.73 -0.13 -1.80 16 20 C -0.12 -1.63 5.92 -26.73 -0.16 -1.79 16 21 C -0.12 -1.49 5.92 -26.73 -0.16 -1.65 16 22 C -0.12 -1.78 5.92 -26.73 -0.16 -1.93 16 23 C -0.11 -1.83 4.46 -26.73 -0.12 -1.95 16 24 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 25 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 26 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 27 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.78 6.58 -51.93 -0.34 0.44 16 32 H 0.06 0.89 6.34 -51.93 -0.33 0.56 16 33 H 0.09 2.00 7.52 -51.93 -0.39 1.61 16 34 H 0.06 0.75 6.58 -51.93 -0.34 0.41 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.07 1.21 6.58 -51.93 -0.34 0.87 16 43 H 0.05 0.79 6.34 -51.93 -0.33 0.47 16 LS Contribution 319.07 15.07 4.81 4.81 Total: -1.00 -30.80 319.07 -8.93 -39.73 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -7.85 Total: 0.75 kcal Atomic # 6 Polarization: -26.03 SS G_CDS: -1.48 Total: -27.51 kcal Atomic # 7 Polarization: -27.79 SS G_CDS: 0.76 Total: -27.03 kcal Atomic # 8 Polarization: -7.84 SS G_CDS: -0.14 Total: -7.98 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.80 -8.93 -39.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224380010.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.691 kcal (2) G-P(sol) polarization free energy of solvation -30.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds