Wall clock time and date at job start Sun Mar 29 2020 23:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31588 * 1 3 3 Si 1.86803 * 119.99496 * 2 1 4 4 H 1.48502 * 109.47130 * 269.99795 * 3 2 1 5 5 H 1.48496 * 109.47171 * 30.00419 * 3 2 1 6 6 H 1.48501 * 109.46644 * 150.00236 * 3 2 1 7 7 C 1.38631 * 120.00332 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99733 * 0.02562 * 7 2 1 9 9 O 1.34918 * 120.00162 * 179.97438 * 7 2 1 10 10 C 1.42900 * 117.00294 * 179.97438 * 9 7 2 11 11 H 1.09004 * 109.46715 * 30.00606 * 10 9 7 12 12 C 1.52996 * 109.47632 * 270.00560 * 10 9 7 13 13 C 1.52997 * 109.46975 * 299.99922 * 12 10 9 14 14 C 1.52997 * 109.47232 * 299.99763 * 13 12 10 15 15 C 1.52996 * 109.47131 * 59.99874 * 14 13 12 16 16 C 1.53000 * 109.47518 * 300.00172 * 15 14 13 17 17 H 1.09001 * 109.47194 * 300.00134 * 16 15 14 18 18 C 1.52996 * 109.47328 * 179.97438 * 16 15 14 19 19 C 1.53002 * 109.46891 * 60.00403 * 18 16 15 20 20 C 1.52996 * 109.46891 * 179.97438 * 19 18 16 21 21 C 1.53000 * 109.47328 * 299.99597 * 20 19 18 22 22 C 1.52997 * 109.47060 * 60.00126 * 21 20 19 23 23 C 1.52997 * 109.46975 * 179.97438 * 18 16 15 24 24 H 0.97003 * 119.99998 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.46870 * 59.99700 * 12 10 9 26 26 H 1.09001 * 109.47372 * 179.97438 * 12 10 9 27 27 H 1.09001 * 109.47375 * 59.99630 * 13 12 10 28 28 H 1.09002 * 109.47045 * 179.97438 * 13 12 10 29 29 H 1.09004 * 109.47261 * 180.02562 * 14 13 12 30 30 H 1.09001 * 109.46832 * 300.00199 * 14 13 12 31 31 H 1.09000 * 109.47054 * 180.02562 * 15 14 13 32 32 H 1.09001 * 109.46997 * 60.00426 * 15 14 13 33 33 H 1.09001 * 109.47372 * 300.00367 * 18 16 15 34 34 H 1.08992 * 109.47056 * 59.99654 * 19 18 16 35 35 H 1.09004 * 109.47006 * 299.99770 * 19 18 16 36 36 H 1.09004 * 109.47368 * 179.97438 * 20 19 18 37 37 H 1.09001 * 109.47372 * 59.99964 * 20 19 18 38 38 H 1.09002 * 109.47398 * 180.02562 * 21 20 19 39 39 H 1.09001 * 109.47194 * 300.00476 * 21 20 19 40 40 H 1.08998 * 109.47533 * 59.99948 * 22 21 20 41 41 H 1.08996 * 109.47853 * 180.02562 * 22 21 20 42 42 H 1.09001 * 109.47375 * 300.00370 * 23 18 16 43 43 H 1.09000 * 109.47140 * 60.00388 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 2.4973 2.0465 -1.4001 5 1 1.4472 2.6527 0.7001 6 1 3.5473 1.4403 0.7000 7 6 2.0091 -1.2005 -0.0005 8 1 1.4691 -2.1359 -0.0014 9 8 3.3583 -1.2005 -0.0011 10 6 4.0071 -2.4737 -0.0010 11 1 3.3789 -3.2016 -0.5146 12 6 4.2392 -2.9279 1.4414 13 6 5.1209 -1.9062 2.1622 14 6 6.4653 -1.7935 1.4405 15 6 6.2332 -1.3394 -0.0019 16 6 5.3515 -2.3610 -0.7228 17 1 5.8464 -3.3322 -0.7229 18 6 5.1190 -1.9065 -2.1651 19 6 6.4632 -1.7935 -2.8871 20 6 6.2306 -1.3396 -4.3296 21 6 5.3492 -2.3617 -5.0501 22 6 4.0050 -2.4748 -4.3281 23 6 4.2378 -2.9285 -2.8861 24 1 -0.4850 0.8401 -0.0004 25 1 3.2814 -3.0082 1.9555 26 1 4.7337 -3.8993 1.4414 27 1 4.6260 -0.9350 2.1622 28 1 5.2859 -2.2296 3.1900 29 1 7.0936 -1.0659 1.9543 30 1 6.9601 -2.7647 1.4405 31 1 7.1910 -1.2595 -0.5162 32 1 5.7384 -0.3682 -0.0019 33 1 4.6240 -0.9354 -2.1647 34 1 6.9582 -2.7645 -2.8875 35 1 7.0914 -1.0656 -2.3736 36 1 7.1883 -1.2586 -4.8439 37 1 5.7354 -0.3686 -4.3296 38 1 5.1838 -2.0386 -6.0779 39 1 5.8444 -3.3327 -5.0501 40 1 3.5097 -1.5039 -4.3280 41 1 3.3771 -3.2033 -4.8410 42 1 4.7333 -3.8994 -2.8864 43 1 3.2802 -3.0095 -2.3718 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224380015.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:57:19 Heat of formation + Delta-G solvation = -100.439768 kcal Electronic energy + Delta-G solvation = -20445.015705 eV Core-core repulsion = 17680.753255 eV Total energy + Delta-G solvation = -2764.262450 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.183 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.87773 -38.64612 -36.78739 -33.96272 -33.42086 -31.78713 -30.72846 -29.09370 -26.41467 -24.19501 -24.04072 -22.35901 -21.68983 -20.55281 -20.27581 -19.67595 -17.20072 -16.87379 -16.13641 -15.71310 -15.58704 -15.23865 -14.99036 -14.68869 -14.43863 -14.18453 -13.99616 -13.85254 -13.34833 -13.13450 -13.04278 -12.77071 -12.72080 -12.63006 -12.20280 -11.97907 -11.97287 -11.83578 -11.65640 -11.61534 -11.31922 -11.18954 -11.11834 -11.00826 -10.60484 -10.37343 -10.14907 -8.22622 -5.86743 1.34198 1.36921 1.55990 2.43683 3.11129 3.46916 3.73434 3.85088 3.91765 4.05525 4.13718 4.15526 4.32832 4.34081 4.51876 4.56330 4.61577 4.65567 4.68693 4.70753 4.72139 4.81574 4.86518 4.90103 4.98378 5.05875 5.08647 5.15804 5.21551 5.29076 5.31146 5.35324 5.38759 5.42926 5.47241 5.50200 5.55902 5.63980 5.66626 5.68819 5.79670 6.23420 7.19335 7.95552 8.94649 Molecular weight = 252.18amu Principal moments of inertia in cm(-1) A = 0.015973 B = 0.009778 C = 0.007503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.524612 B = 2863.011159 C = 3730.702914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.961 5.961 2 C -0.018 4.018 3 Si 0.964 3.036 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.260 1.260 7 C -0.329 4.329 8 H 0.041 0.959 9 O -0.324 6.324 10 C 0.099 3.901 11 H 0.030 0.970 12 C -0.136 4.136 13 C -0.112 4.112 14 C -0.108 4.108 15 C -0.109 4.109 16 C -0.067 4.067 17 H 0.096 0.904 18 C -0.076 4.076 19 C -0.107 4.107 20 C -0.121 4.121 21 C -0.110 4.110 22 C -0.121 4.121 23 C -0.111 4.111 24 H 0.269 0.731 25 H 0.033 0.967 26 H 0.085 0.915 27 H 0.033 0.967 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.034 0.966 33 H 0.037 0.963 34 H 0.078 0.922 35 H 0.067 0.933 36 H 0.080 0.920 37 H 0.042 0.958 38 H 0.066 0.934 39 H 0.075 0.925 40 H 0.036 0.964 41 H 0.063 0.937 42 H 0.075 0.925 43 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.406 -5.839 -5.080 19.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.610 5.610 2 C -0.209 4.209 3 Si 0.790 3.210 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.185 1.185 7 C -0.408 4.408 8 H 0.059 0.941 9 O -0.240 6.240 10 C 0.041 3.959 11 H 0.048 0.952 12 C -0.174 4.174 13 C -0.149 4.149 14 C -0.145 4.145 15 C -0.147 4.147 16 C -0.086 4.086 17 H 0.114 0.886 18 C -0.094 4.094 19 C -0.144 4.144 20 C -0.158 4.158 21 C -0.148 4.148 22 C -0.158 4.158 23 C -0.148 4.148 24 H 0.078 0.922 25 H 0.052 0.948 26 H 0.104 0.896 27 H 0.052 0.948 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.099 0.901 31 H 0.103 0.897 32 H 0.053 0.947 33 H 0.055 0.945 34 H 0.096 0.904 35 H 0.086 0.914 36 H 0.098 0.902 37 H 0.061 0.939 38 H 0.085 0.915 39 H 0.093 0.907 40 H 0.054 0.946 41 H 0.082 0.918 42 H 0.093 0.907 43 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 17.423 -5.576 -5.075 18.985 hybrid contribution -1.144 0.646 0.225 1.333 sum 16.279 -4.930 -4.850 17.687 Atomic orbital electron populations 1.69806 1.06845 1.27822 1.56499 1.25035 0.95583 1.01377 0.98942 0.85260 0.78810 0.78720 0.78194 1.20441 1.21268 1.18478 1.20303 0.80606 0.93326 1.46552 0.94127 1.85226 1.17426 1.28011 1.93294 1.22083 0.93508 0.85568 0.94731 0.95201 1.22004 0.99126 0.99498 0.96772 1.21372 0.96239 0.98448 0.98861 1.21486 0.95878 1.02148 0.95031 1.21538 0.99221 0.97975 0.95922 1.21262 0.93457 1.00084 0.93765 0.88558 1.21021 0.96521 0.98119 0.93769 1.21605 0.95591 1.02207 0.95040 1.21556 1.00080 0.98243 0.95922 1.21491 0.94678 1.00035 0.98546 1.21515 0.98265 1.00311 0.95751 1.21535 0.98841 0.99008 0.95441 0.92209 0.94818 0.89648 0.94836 0.91299 0.91338 0.90075 0.89745 0.94682 0.94478 0.90374 0.91439 0.90164 0.93900 0.91518 0.90656 0.94555 0.91838 0.90662 0.94988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -62.05 13.97 21.61 0.30 -61.75 16 2 C -0.02 -1.09 5.49 84.82 0.47 -0.62 16 3 Si 0.96 49.52 28.62 68.60 1.96 51.49 16 4 H -0.28 -13.94 7.11 99.48 0.71 -13.24 16 5 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 6 H -0.26 -13.09 7.11 99.48 0.71 -12.38 16 7 C -0.33 -19.74 10.23 67.91 0.69 -19.04 16 8 H 0.04 2.65 7.88 -2.91 -0.02 2.63 16 9 O -0.32 -16.62 6.23 -81.87 -0.51 -17.13 16 10 C 0.10 4.02 2.04 30.59 0.06 4.08 16 11 H 0.03 1.30 6.09 -2.38 -0.01 1.29 16 12 C -0.14 -4.90 5.63 30.59 0.17 -4.73 16 13 C -0.11 -3.69 5.78 30.59 0.18 -3.51 16 14 C -0.11 -2.85 5.92 30.59 0.18 -2.67 16 15 C -0.11 -3.22 4.70 30.59 0.14 -3.08 16 16 C -0.07 -2.11 1.61 -10.79 -0.02 -2.13 16 17 H 0.10 2.47 8.14 -2.39 -0.02 2.46 16 18 C -0.08 -2.41 1.63 -10.80 -0.02 -2.43 16 19 C -0.11 -2.53 4.85 30.59 0.15 -2.38 16 20 C -0.12 -2.71 5.92 30.59 0.18 -2.53 16 21 C -0.11 -2.43 5.92 30.59 0.18 -2.25 16 22 C -0.12 -3.48 5.92 30.58 0.18 -3.30 16 23 C -0.11 -3.50 4.85 30.58 0.15 -3.35 16 24 H 0.27 16.31 8.31 -92.71 -0.77 15.54 16 25 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 27 H 0.03 1.36 7.68 -2.39 -0.02 1.34 16 28 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 30 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.08 1.98 6.43 -2.39 -0.02 1.97 16 32 H 0.03 1.29 7.68 -2.39 -0.02 1.27 16 33 H 0.04 1.51 7.68 -2.39 -0.02 1.49 16 34 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.07 1.52 6.43 -2.38 -0.02 1.51 16 36 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 43 H 0.03 1.24 6.43 -2.39 -0.02 1.23 16 Total: -1.00 -68.55 319.23 5.40 -63.15 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: 0.94 Total: 12.18 kcal Atomic # 6 Polarization: -50.64 SS G_CDS: 2.70 Total: -47.94 kcal Atomic # 7 Polarization: -62.05 SS G_CDS: 0.30 Total: -61.75 kcal Atomic # 8 Polarization: -16.62 SS G_CDS: -0.51 Total: -17.13 kcal Atomic # 14 Polarization: 49.52 SS G_CDS: 1.96 Total: 51.49 kcal Total: -68.55 5.40 -63.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224380015.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.288 kcal (2) G-P(sol) polarization free energy of solvation -68.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds