Wall clock time and date at job start Sun Mar 29 2020 23:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31584 * 1 3 3 Si 1.86805 * 120.00250 * 2 1 4 4 H 1.48506 * 109.46911 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46981 * 299.99975 * 3 2 1 6 6 H 1.48498 * 109.46847 * 60.00101 * 3 2 1 7 7 C 1.38640 * 119.99907 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99867 * 179.97438 * 7 2 1 9 9 O 1.34930 * 119.99813 * 0.02562 * 7 2 1 10 10 C 1.42895 * 117.00149 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47269 * 149.99744 * 10 9 7 12 12 C 1.53002 * 109.46817 * 60.00152 * 11 10 9 13 13 C 1.53000 * 109.47233 * 60.00194 * 12 11 10 14 14 C 1.53002 * 109.47233 * 179.97438 * 13 12 11 15 15 C 1.53006 * 109.46711 * 300.00001 * 14 13 12 16 16 C 1.53002 * 109.46711 * 179.97438 * 15 14 13 17 17 C 1.53000 * 109.47233 * 59.99999 * 16 15 14 18 18 C 1.52997 * 109.47060 * 299.99657 * 17 16 15 19 19 C 1.52997 * 109.47415 * 179.97438 * 14 13 12 20 20 C 1.52997 * 109.47060 * 299.99657 * 13 12 11 21 21 C 1.52999 * 109.47317 * 59.99960 * 20 13 12 22 22 H 0.97007 * 119.99291 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.47098 * 29.99464 * 10 9 7 24 24 H 1.08993 * 109.47194 * 299.99633 * 11 10 9 25 25 H 1.09002 * 109.46695 * 179.97438 * 11 10 9 26 26 H 1.08992 * 109.47063 * 299.99823 * 12 11 10 27 27 H 1.09004 * 109.46733 * 179.97438 * 12 11 10 28 28 H 1.09002 * 109.47398 * 59.99826 * 13 12 11 29 29 H 1.09002 * 109.47075 * 59.99068 * 14 13 12 30 30 H 1.09002 * 109.46589 * 299.99365 * 15 14 13 31 31 H 1.08996 * 109.47165 * 59.99875 * 15 14 13 32 32 H 1.08992 * 109.47063 * 299.99627 * 16 15 14 33 33 H 1.09004 * 109.46733 * 179.97438 * 16 15 14 34 34 H 1.09001 * 109.47194 * 180.02562 * 17 16 15 35 35 H 1.09002 * 109.47398 * 59.99826 * 17 16 15 36 36 H 1.09002 * 109.47153 * 300.00319 * 18 17 16 37 37 H 1.08996 * 109.47853 * 180.02562 * 18 17 16 38 38 H 1.09000 * 109.47140 * 300.00024 * 19 14 13 39 39 H 1.09002 * 109.47045 * 59.99931 * 19 14 13 40 40 H 1.08996 * 109.47853 * 180.02562 * 20 13 12 41 41 H 1.09002 * 109.47153 * 300.00319 * 20 13 12 42 42 H 1.09000 * 109.47486 * 180.02562 * 21 20 13 43 43 H 1.09002 * 109.46716 * 60.00091 * 21 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2499 1.6177 0.0000 4 1 3.7100 1.3463 0.0006 5 1 1.8912 2.3964 -1.2125 6 1 1.8912 2.3964 1.2125 7 6 2.0090 -1.2007 0.0005 8 1 3.0890 -1.2007 0.0001 9 8 1.3343 -2.3692 0.0005 10 6 2.1125 -3.5676 0.0005 11 6 1.3425 -4.6757 0.7218 12 6 0.0170 -4.9283 0.0005 13 6 0.2948 -5.3560 -1.4419 14 6 -1.0307 -5.6092 -2.1630 15 6 -1.8001 -6.7176 -1.4415 16 6 -3.1259 -6.9703 -2.1622 17 6 -2.8487 -7.3979 -3.6049 18 6 -2.0794 -6.2896 -4.3263 19 6 -0.7531 -6.0364 -3.6057 20 6 1.0647 -4.2480 -2.1632 21 6 2.3902 -3.9953 -1.4420 22 1 -0.4849 0.8402 -0.0004 23 1 3.0568 -3.3877 0.5143 24 1 1.1448 -4.3710 1.7494 25 1 1.9360 -5.5900 0.7214 26 1 -0.5765 -4.0141 0.0006 27 1 -0.5313 -5.7180 0.5142 28 1 0.8884 -6.2703 -1.4420 29 1 -1.6248 -4.6953 -2.1629 30 1 -1.2061 -7.6315 -1.4416 31 1 -1.9980 -6.4128 -0.4138 32 1 -3.7197 -6.0563 -2.1618 33 1 -3.6739 -7.7602 -1.6484 34 1 -3.7933 -7.5775 -4.1184 35 1 -2.2549 -8.3119 -3.6053 36 1 -2.6732 -5.3755 -4.3259 37 1 -1.8822 -6.5938 -5.3542 38 1 -0.2051 -5.2465 -4.1194 39 1 -0.1589 -6.9503 -3.6060 40 1 1.2622 -4.5525 -3.1910 41 1 0.4711 -3.3338 -2.1632 42 1 2.9385 -3.2056 -1.9556 43 1 2.9838 -4.9095 -1.4421 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224381310.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:56:53 Heat of formation + Delta-G solvation = -86.809265 kcal Electronic energy + Delta-G solvation = -19761.528277 eV Core-core repulsion = 16997.856890 eV Total energy + Delta-G solvation = -2763.671387 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.183 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.36430 -37.45556 -34.92241 -32.03474 -30.96012 -30.84764 -29.76647 -27.45950 -24.40935 -23.00224 -22.73618 -21.18947 -20.28791 -19.50256 -18.83075 -17.31670 -15.58242 -15.22555 -14.52162 -14.19019 -14.03051 -14.02459 -13.78239 -13.44350 -12.84417 -12.79711 -12.42113 -12.18401 -11.89335 -11.71522 -11.41189 -11.22887 -11.04653 -11.01374 -10.90427 -10.84333 -10.57291 -10.33832 -10.22869 -10.20020 -9.94364 -9.79849 -9.69894 -9.25169 -9.01925 -8.83806 -7.87090 -5.88240 -3.49474 3.33549 3.37409 3.41201 4.36941 4.78827 4.85064 4.89271 5.23189 5.29689 5.40466 5.43487 5.51663 5.54148 5.64542 5.66003 5.71546 5.76602 5.80509 5.94907 6.01374 6.02542 6.10228 6.11685 6.20147 6.25069 6.25833 6.30332 6.33293 6.35051 6.43192 6.50703 6.58714 6.65740 6.71888 6.75508 6.95557 7.03804 7.08239 7.16758 7.35177 7.54564 8.50468 9.56243 10.28449 11.32979 Molecular weight = 252.18amu Principal moments of inertia in cm(-1) A = 0.029296 B = 0.005246 C = 0.005009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.517842 B = 5335.851302 C = 5588.921100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.022 3.978 3 Si 0.918 3.082 4 H -0.276 1.276 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.353 4.353 8 H 0.059 0.941 9 O -0.279 6.279 10 C 0.095 3.905 11 C -0.110 4.110 12 C -0.107 4.107 13 C -0.073 4.073 14 C -0.081 4.081 15 C -0.114 4.114 16 C -0.120 4.120 17 C -0.117 4.117 18 C -0.120 4.120 19 C -0.114 4.114 20 C -0.105 4.105 21 C -0.134 4.134 22 H 0.255 0.745 23 H 0.033 0.967 24 H 0.059 0.941 25 H 0.053 0.947 26 H 0.078 0.922 27 H 0.048 0.952 28 H 0.055 0.945 29 H 0.072 0.928 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.057 0.943 36 H 0.061 0.939 37 H 0.055 0.945 38 H 0.065 0.935 39 H 0.056 0.944 40 H 0.046 0.954 41 H 0.078 0.922 42 H 0.058 0.942 43 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.533 -14.164 -5.388 15.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.176 4.176 3 Si 0.746 3.254 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.433 4.433 8 H 0.077 0.923 9 O -0.194 6.194 10 C 0.036 3.964 11 C -0.147 4.147 12 C -0.145 4.145 13 C -0.092 4.092 14 C -0.100 4.100 15 C -0.152 4.152 16 C -0.158 4.158 17 C -0.155 4.155 18 C -0.158 4.158 19 C -0.152 4.152 20 C -0.142 4.142 21 C -0.172 4.172 22 H 0.065 0.935 23 H 0.051 0.949 24 H 0.078 0.922 25 H 0.072 0.928 26 H 0.097 0.903 27 H 0.067 0.933 28 H 0.074 0.926 29 H 0.090 0.910 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.084 0.916 39 H 0.075 0.925 40 H 0.065 0.935 41 H 0.096 0.904 42 H 0.076 0.924 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.859 -14.058 -5.386 15.323 hybrid contribution 0.808 0.872 -0.029 1.189 sum -2.052 -13.186 -5.415 14.401 Atomic orbital electron populations 1.70027 1.05257 1.25469 1.52570 1.24879 0.95578 0.97472 0.99652 0.85989 0.78867 0.82882 0.77628 1.20066 1.21034 1.21036 1.20917 0.90019 0.83096 1.49262 0.92290 1.85686 1.31268 1.09928 1.92538 1.21719 0.93532 0.88108 0.93072 1.21551 0.96848 0.96974 0.99372 1.21490 0.97490 1.01306 0.94170 1.21105 0.94960 0.97781 0.95349 1.21180 0.96519 0.98303 0.93972 1.21630 0.95640 0.98564 0.99342 1.21545 0.97745 1.00994 0.95478 1.21522 0.99571 0.98424 0.95981 1.21553 0.97013 0.98808 0.98393 1.21636 0.96612 1.01039 0.95900 1.21446 0.96695 0.99190 0.96859 1.22000 0.97115 0.99500 0.98632 0.93492 0.94898 0.92200 0.92791 0.90300 0.93290 0.92624 0.90965 0.92535 0.91600 0.92018 0.92593 0.92670 0.92395 0.92031 0.92603 0.91607 0.92544 0.93490 0.90379 0.92352 0.93585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.82 13.68 55.48 0.76 -27.07 16 2 C 0.02 0.64 5.49 -17.51 -0.10 0.54 16 3 Si 0.92 22.29 29.55 -169.99 -5.02 17.27 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.35 -10.32 9.77 30.88 0.30 -10.02 16 8 H 0.06 1.65 7.64 -52.49 -0.40 1.25 16 9 O -0.28 -7.77 8.08 -16.51 -0.13 -7.90 16 10 C 0.10 2.09 2.96 -26.73 -0.08 2.01 16 11 C -0.11 -2.05 5.66 -26.73 -0.15 -2.20 16 12 C -0.11 -1.90 4.71 -26.73 -0.13 -2.03 16 13 C -0.07 -1.17 1.77 -90.62 -0.16 -1.33 16 14 C -0.08 -1.15 1.77 -90.62 -0.16 -1.31 16 15 C -0.11 -1.42 4.85 -26.73 -0.13 -1.55 16 16 C -0.12 -1.34 5.92 -26.73 -0.16 -1.49 16 17 C -0.12 -1.22 5.92 -26.73 -0.16 -1.37 16 18 C -0.12 -1.35 5.92 -26.71 -0.16 -1.51 16 19 C -0.11 -1.45 4.86 -26.71 -0.13 -1.57 16 20 C -0.10 -1.91 4.71 -26.73 -0.13 -2.04 16 21 C -0.13 -2.60 5.63 -26.73 -0.15 -2.75 16 22 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 23 H 0.03 0.73 7.80 -51.93 -0.41 0.32 16 24 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 25 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.08 1.69 7.68 -51.93 -0.40 1.30 16 27 H 0.05 0.76 6.43 -51.93 -0.33 0.42 16 28 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.85 6.43 -51.93 -0.33 0.52 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.88 6.43 -51.93 -0.33 0.54 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.05 0.76 6.43 -51.93 -0.33 0.43 16 41 H 0.08 1.73 7.68 -51.93 -0.40 1.33 16 42 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 43 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 321.41 15.07 4.84 4.84 Total: -1.00 -30.99 321.41 -9.03 -40.02 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -7.99 Total: -0.54 kcal Atomic # 6 Polarization: -25.14 SS G_CDS: -1.48 Total: -26.62 kcal Atomic # 7 Polarization: -27.82 SS G_CDS: 0.76 Total: -27.07 kcal Atomic # 8 Polarization: -7.77 SS G_CDS: -0.13 Total: -7.90 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.99 -9.03 -40.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224381310.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.793 kcal (2) G-P(sol) polarization free energy of solvation -30.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds