Wall clock time and date at job start Sun Mar 29 2020 23:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46497 * 120.00406 * 2 1 4 4 C 1.53005 * 109.46514 * 275.32325 * 3 2 1 5 5 H 1.08995 * 112.74186 * 43.97848 * 4 3 2 6 6 C 1.53494 * 113.46610 * 273.22461 * 4 3 2 7 7 C 1.53610 * 83.30858 * 219.17349 * 6 4 3 8 8 N 1.47070 * 88.00482 * 26.02263 * 7 6 4 9 9 C 1.36938 * 136.06156 * 152.95682 * 8 7 6 10 10 H 1.07998 * 120.00261 * 175.11055 * 9 8 7 11 11 C 1.38813 * 119.99813 * 355.12092 * 9 8 7 12 12 N 1.31618 * 120.00126 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99991 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.46875 * 359.97438 * 13 11 9 15 15 H 1.48495 * 109.47323 * 119.99164 * 13 11 9 16 16 H 1.48501 * 109.46957 * 239.99517 * 13 11 9 17 17 C 1.34780 * 119.99888 * 179.97438 * 2 1 3 18 18 O 1.21278 * 120.00132 * 180.27956 * 17 2 1 19 19 C 1.50707 * 119.99678 * 0.02562 * 17 2 1 20 20 C 1.53000 * 109.46877 * 179.97438 * 19 17 2 21 21 C 1.53001 * 117.49740 * 243.62042 * 20 19 17 22 22 C 1.52997 * 117.49908 * 174.99816 * 20 19 17 23 23 H 1.09003 * 109.47400 * 264.84099 * 1 2 3 24 24 H 1.09001 * 109.46540 * 24.84213 * 1 2 3 25 25 H 1.08998 * 109.46925 * 144.83993 * 1 2 3 26 26 H 1.08997 * 109.47057 * 35.32055 * 3 2 1 27 27 H 1.08998 * 109.47251 * 155.32542 * 3 2 1 28 28 H 1.09002 * 114.20971 * 332.74234 * 6 4 3 29 29 H 1.08998 * 114.20619 * 105.57113 * 6 4 3 30 30 H 1.08997 * 113.41520 * 271.24637 * 7 6 4 31 31 H 1.09002 * 113.56216 * 140.82302 * 7 6 4 32 32 H 0.96996 * 120.00523 * 180.02562 * 12 11 9 33 33 H 1.09003 * 109.47106 * 299.99358 * 19 17 2 34 34 H 1.08997 * 109.47039 * 59.99918 * 19 17 2 35 35 H 1.08997 * 115.54909 * 29.33014 * 20 19 17 36 36 H 1.08998 * 117.49871 * 0.02562 * 21 20 19 37 37 H 1.08999 * 117.49341 * 145.02125 * 21 20 19 38 38 H 1.09002 * 117.50298 * 214.97936 * 22 20 19 39 39 H 1.09003 * 117.50140 * 0.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3367 1.7771 -1.4364 5 1 1.4127 1.6852 -2.0072 6 6 3.5649 1.2169 -2.1669 7 6 3.6542 2.6418 -2.7336 8 7 2.9521 3.1097 -1.5289 9 6 2.8958 4.2738 -0.8100 10 1 2.2115 4.3629 0.0207 11 6 3.7181 5.3395 -1.1493 12 7 4.5523 5.2308 -2.1615 13 14 3.6407 6.9278 -0.1691 14 1 2.6286 6.7951 0.9094 15 1 4.9706 7.2045 0.4309 16 1 3.2610 8.0466 -1.0688 17 6 2.1389 -1.1672 0.0005 18 8 3.3517 -1.1673 0.0056 19 6 1.3853 -2.4723 0.0005 20 6 2.3795 -3.6353 0.0005 21 6 2.3802 -4.5641 -1.2153 22 6 1.8109 -5.0508 0.1188 23 1 -0.3634 -0.0924 1.0235 24 1 -0.3632 0.9326 -0.4318 25 1 -0.3633 -0.8402 -0.5918 26 1 1.6532 2.0026 0.5941 27 1 3.1880 1.1163 0.4290 28 1 4.3906 0.9449 -1.5093 29 1 3.3334 0.4536 -2.9098 30 1 3.0816 2.7799 -3.6507 31 1 4.6749 3.0157 -2.8138 32 1 5.1271 5.9753 -2.3984 33 1 0.7584 -2.5299 0.8904 34 1 0.7590 -2.5302 -0.8897 35 1 3.3366 -3.4355 0.4822 36 1 1.6727 -4.3464 -2.0154 37 1 3.3380 -4.9754 -1.5338 38 1 2.3942 -5.7824 0.6780 39 1 0.7285 -5.1536 0.1963 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230585931.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:26:27 Heat of formation + Delta-G solvation = 48.239973 kcal Electronic energy + Delta-G solvation = -18853.624102 eV Core-core repulsion = 15992.268546 eV Total energy + Delta-G solvation = -2861.355556 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.85399 -38.03196 -37.02171 -35.12039 -32.16451 -30.19566 -27.91582 -27.79380 -26.08501 -23.34703 -22.53010 -22.40122 -20.68815 -19.11984 -18.88190 -17.01526 -16.61476 -16.15797 -15.54851 -15.18769 -14.58236 -14.24419 -13.87465 -13.71817 -13.19489 -13.06993 -12.64380 -12.35647 -12.09247 -11.98466 -11.65181 -11.47257 -11.39627 -11.02485 -10.80005 -10.69019 -10.46390 -10.34683 -10.10878 -9.79314 -9.71511 -9.57545 -9.34872 -8.74063 -8.21033 -6.81558 -5.71335 -3.05219 2.88580 3.21435 3.40896 3.45341 3.48436 3.70874 4.47031 4.55042 4.62208 4.80158 5.00021 5.11050 5.30180 5.35148 5.38627 5.45294 5.48695 5.50385 5.57910 5.68755 5.71165 5.77657 5.96150 5.97642 6.07171 6.16775 6.23209 6.47826 6.59685 6.73230 6.83952 6.88977 7.31861 7.53590 7.66719 7.67575 8.04766 8.45922 9.07406 9.74953 10.70822 11.45250 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.040797 B = 0.004582 C = 0.004366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.158643 B = 6109.156822 C = 6411.190587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.613 5.613 3 C 0.114 3.886 4 C 0.131 3.869 5 H 0.039 0.961 6 C -0.155 4.155 7 C 0.146 3.854 8 N -0.601 5.601 9 C -0.217 4.217 10 H 0.079 0.921 11 C -0.007 4.007 12 N -0.917 5.917 13 Si 0.911 3.089 14 H -0.280 1.280 15 H -0.290 1.290 16 H -0.291 1.291 17 C 0.511 3.489 18 O -0.532 6.532 19 C -0.108 4.108 20 C -0.138 4.138 21 C -0.178 4.178 22 C -0.183 4.183 23 H 0.053 0.947 24 H 0.075 0.925 25 H 0.065 0.935 26 H 0.070 0.930 27 H 0.088 0.912 28 H 0.081 0.919 29 H 0.047 0.953 30 H 0.019 0.981 31 H 0.075 0.925 32 H 0.252 0.748 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.118 0.882 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.369 -17.038 3.437 19.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.347 5.347 3 C -0.009 4.009 4 C 0.023 3.977 5 H 0.056 0.944 6 C -0.193 4.193 7 C 0.021 3.979 8 N -0.327 5.327 9 C -0.345 4.345 10 H 0.097 0.903 11 C -0.204 4.204 12 N -0.564 5.564 13 Si 0.742 3.258 14 H -0.205 1.205 15 H -0.217 1.217 16 H -0.218 1.218 17 C 0.299 3.701 18 O -0.408 6.408 19 C -0.148 4.148 20 C -0.156 4.156 21 C -0.215 4.215 22 C -0.220 4.220 23 H 0.071 0.929 24 H 0.094 0.906 25 H 0.084 0.916 26 H 0.088 0.912 27 H 0.107 0.893 28 H 0.100 0.900 29 H 0.066 0.934 30 H 0.037 0.963 31 H 0.094 0.906 32 H 0.063 0.937 33 H 0.111 0.889 34 H 0.109 0.891 35 H 0.136 0.864 36 H 0.111 0.889 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -8.631 -16.652 3.537 19.087 hybrid contribution -0.350 1.039 0.324 1.143 sum -8.981 -15.614 3.860 18.421 Atomic orbital electron populations 1.21759 0.80163 1.03266 1.01280 1.47916 1.06690 1.06695 1.73438 1.21904 0.97588 0.82388 0.99015 1.22428 0.95177 0.86899 0.93188 0.94362 1.23630 0.98681 0.97289 0.99744 1.22149 0.98732 0.88132 0.88932 1.45595 1.51428 1.07941 1.27760 1.18919 1.17684 0.88840 1.09038 0.90306 1.24793 0.98651 0.98374 0.98572 1.69844 1.26254 1.31211 1.29099 0.86063 0.77338 0.83405 0.79043 1.20489 1.21666 1.21812 1.20476 0.88167 0.85142 0.76339 1.90692 1.13873 1.87107 1.49134 1.21243 0.98069 0.91713 1.03780 1.22077 1.01062 0.89384 1.03108 1.23014 1.02806 1.04086 0.91571 1.22988 1.00728 0.97319 1.01010 0.92863 0.90616 0.91623 0.91171 0.89333 0.90013 0.93402 0.96281 0.90641 0.93746 0.88901 0.89089 0.86373 0.88905 0.88796 0.88841 0.88945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.82 10.17 59.85 0.61 1.43 16 2 N -0.61 -9.10 2.87 -181.56 -0.52 -9.63 16 3 C 0.11 2.15 5.39 -4.04 -0.02 2.12 16 4 C 0.13 2.79 4.31 -72.39 -0.31 2.48 16 5 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 6 C -0.16 -3.33 8.02 -26.16 -0.21 -3.54 16 7 C 0.15 3.67 7.52 -8.44 -0.06 3.60 16 8 N -0.60 -15.82 3.65 -176.78 -0.64 -16.46 16 9 C -0.22 -6.14 10.55 -15.06 -0.16 -6.30 16 10 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 11 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 12 N -0.92 -27.87 11.43 55.49 0.63 -27.24 16 13 Si 0.91 22.37 29.55 -169.99 -5.02 17.35 16 14 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 15 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 16 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 17 C 0.51 7.74 7.67 -10.98 -0.08 7.66 16 18 O -0.53 -10.21 15.06 5.56 0.08 -10.12 16 19 C -0.11 -1.14 4.60 -27.88 -0.13 -1.27 16 20 C -0.14 -1.51 5.42 -90.62 -0.49 -2.00 16 21 C -0.18 -1.71 10.18 -26.73 -0.27 -1.98 16 22 C -0.18 -1.55 10.25 -26.73 -0.27 -1.83 16 23 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.08 0.82 8.03 -51.93 -0.42 0.40 16 25 H 0.07 0.52 6.66 -51.93 -0.35 0.18 16 26 H 0.07 1.31 8.11 -51.93 -0.42 0.89 16 27 H 0.09 1.89 7.00 -51.93 -0.36 1.52 16 28 H 0.08 1.87 7.94 -51.93 -0.41 1.45 16 29 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 30 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.08 2.09 6.92 -51.93 -0.36 1.73 16 32 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 33 H 0.09 0.79 8.11 -51.93 -0.42 0.37 16 34 H 0.09 0.81 7.14 -51.93 -0.37 0.44 16 35 H 0.12 1.55 7.30 -51.93 -0.38 1.17 16 36 H 0.09 0.82 8.03 -51.93 -0.42 0.40 16 37 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 321.83 15.07 4.85 4.85 Total: -1.00 -33.05 321.83 -8.54 -41.59 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -6.41 Total: -0.41 kcal Atomic # 6 Polarization: 1.57 SS G_CDS: -1.50 Total: 0.07 kcal Atomic # 7 Polarization: -52.79 SS G_CDS: -0.53 Total: -53.33 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: 0.08 Total: -10.12 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -33.05 -8.54 -41.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230585931.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.828 kcal (2) G-P(sol) polarization free energy of solvation -33.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds