Wall clock time and date at job start Sun Mar 29 2020 23:42:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47329 * 2 1 4 4 C 1.52997 * 109.46993 * 179.97438 * 3 2 1 5 5 N 1.46904 * 109.46987 * 180.45217 * 4 3 2 6 6 C 1.46898 * 111.00103 * 61.17342 * 5 4 3 7 7 C 1.50706 * 109.46566 * 66.04730 * 6 5 4 8 8 H 1.07995 * 120.00467 * 0.02562 * 7 6 5 9 9 C 1.37878 * 119.99666 * 179.97438 * 7 6 5 10 10 N 1.31512 * 120.00155 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 120.00044 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47087 * 0.02562 * 11 9 7 13 13 H 1.48505 * 109.47095 * 119.99812 * 11 9 7 14 14 H 1.48495 * 109.47133 * 239.99907 * 11 9 7 15 15 C 1.46902 * 111.00012 * 297.22377 * 5 4 3 16 16 C 1.50699 * 109.46959 * 288.42695 * 15 5 4 17 17 C 1.35354 * 126.91455 * 95.38306 * 16 15 5 18 18 N 1.33770 * 106.49970 * 179.90476 * 17 16 15 19 19 N 1.28635 * 108.88171 * 0.36169 * 18 17 16 20 20 N 1.28712 * 110.18119 * 359.76943 * 19 18 17 21 21 C 1.46509 * 125.87072 * 179.97438 * 20 19 18 22 22 H 1.08998 * 109.47366 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47256 * 299.99798 * 1 2 3 24 24 H 1.08997 * 109.47217 * 60.00028 * 1 2 3 25 25 H 1.09002 * 109.46983 * 239.99736 * 2 1 3 26 26 H 1.09001 * 109.46908 * 120.00371 * 2 1 3 27 27 H 1.09000 * 109.46787 * 59.99914 * 3 2 1 28 28 H 1.08997 * 109.46948 * 300.00136 * 3 2 1 29 29 H 1.08999 * 109.47017 * 60.45875 * 4 3 2 30 30 H 1.08997 * 109.47269 * 300.45065 * 4 3 2 31 31 H 1.08999 * 109.47635 * 186.04329 * 6 5 4 32 32 H 1.08997 * 109.47687 * 306.05016 * 6 5 4 33 33 H 0.96998 * 120.00575 * 180.02562 * 10 9 7 34 34 H 1.09001 * 109.47499 * 48.42503 * 15 5 4 35 35 H 1.08996 * 109.47358 * 168.42413 * 15 5 4 36 36 H 1.08003 * 126.74858 * 0.02687 * 17 16 15 37 37 H 1.08998 * 109.47011 * 270.02616 * 21 20 19 38 38 H 1.09002 * 109.46670 * 30.02745 * 21 20 19 39 39 H 1.08993 * 109.46962 * 150.02578 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0598 2.8273 0.0116 6 6 3.6113 3.5348 1.2184 7 6 4.2567 2.9167 2.4319 8 1 4.9327 2.0821 2.3180 9 6 3.9850 3.4173 3.6875 10 7 3.1631 4.4345 3.8261 11 14 4.7855 2.6517 5.1916 12 1 5.6631 1.5309 4.7688 13 1 5.5971 3.6766 5.8961 14 1 3.7332 2.1395 6.1056 15 6 3.6443 3.5422 -1.2026 16 6 4.4234 3.0222 -2.3831 17 6 4.0332 2.0650 -3.2568 18 7 5.0300 1.9257 -4.1380 19 7 5.9780 2.7371 -3.8258 20 7 5.6563 3.4143 -2.7796 21 6 6.4833 4.4339 -2.1292 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 1.6767 1.9562 0.8900 28 1 1.6767 1.9563 -0.8900 29 1 3.9337 0.9355 -0.8932 30 1 3.9330 0.9217 0.8868 31 1 3.8957 4.5849 1.1508 32 1 2.5275 3.4567 1.3038 33 1 2.9721 4.7870 4.7094 34 1 2.5793 3.3830 -1.3716 35 1 3.8374 4.6080 -1.0808 36 1 3.0996 1.5220 -3.2460 37 1 7.1099 3.9642 -1.3711 38 1 7.1150 4.9184 -2.8737 39 1 5.8400 5.1777 -1.6590 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001238159442.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:42:16 Heat of formation + Delta-G solvation = 89.695629 kcal Electronic energy + Delta-G solvation = -19153.721193 eV Core-core repulsion = 16326.456040 eV Total energy + Delta-G solvation = -2827.265153 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.95986 -37.75982 -34.47128 -33.94012 -32.81434 -31.20217 -28.43221 -27.84065 -27.18174 -24.90095 -23.33826 -22.26115 -21.28045 -20.77231 -19.29467 -16.92751 -16.43513 -16.27310 -15.29780 -15.02062 -14.72087 -14.25380 -14.00048 -13.78303 -13.32775 -13.07088 -12.77713 -12.56563 -12.24590 -12.22581 -11.56205 -11.39552 -11.23310 -11.02052 -10.84257 -10.79827 -10.62576 -10.59148 -10.51062 -10.00581 -9.89110 -9.72094 -9.32872 -8.86646 -8.52558 -7.36655 -6.12645 -4.13736 1.87113 2.66402 2.83524 3.24346 3.32823 3.37199 4.34629 4.63283 4.77552 4.88376 5.17697 5.21396 5.24673 5.27859 5.29624 5.33792 5.51071 5.52014 5.72390 5.80222 5.85178 6.04517 6.07719 6.13826 6.17535 6.23952 6.39171 6.43644 6.51464 6.67161 6.84719 6.87092 7.13996 7.28330 7.67719 7.92543 8.04589 8.39459 8.77781 8.93843 9.51051 10.97981 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.016530 B = 0.007132 C = 0.005450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.486067 B = 3925.043484 C = 5136.207908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.118 4.118 3 C -0.157 4.157 4 C 0.065 3.935 5 N -0.531 5.531 6 C 0.190 3.810 7 C -0.505 4.505 8 H 0.063 0.937 9 C 0.057 3.943 10 N -0.898 5.898 11 Si 0.895 3.105 12 H -0.272 1.272 13 H -0.284 1.284 14 H -0.284 1.284 15 C 0.113 3.887 16 C 0.017 3.983 17 C -0.058 4.058 18 N -0.278 5.278 19 N -0.103 5.103 20 N -0.281 5.281 21 C 0.086 3.914 22 H 0.047 0.953 23 H 0.054 0.946 24 H 0.049 0.951 25 H 0.055 0.945 26 H 0.061 0.939 27 H 0.077 0.923 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.082 0.918 31 H 0.028 0.972 32 H 0.003 0.997 33 H 0.261 0.739 34 H 0.063 0.937 35 H 0.080 0.920 36 H 0.182 0.818 37 H 0.096 0.904 38 H 0.093 0.907 39 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.968 -1.727 -8.759 8.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.156 4.156 3 C -0.196 4.196 4 C -0.064 4.064 5 N -0.255 5.255 6 C 0.066 3.934 7 C -0.544 4.544 8 H 0.081 0.919 9 C -0.144 4.144 10 N -0.537 5.537 11 Si 0.723 3.277 12 H -0.197 1.197 13 H -0.210 1.210 14 H -0.211 1.211 15 C -0.017 4.017 16 C -0.117 4.117 17 C -0.216 4.216 18 N -0.143 5.143 19 N -0.082 5.082 20 N -0.074 5.074 21 C -0.056 4.056 22 H 0.066 0.934 23 H 0.073 0.927 24 H 0.068 0.932 25 H 0.073 0.927 26 H 0.080 0.920 27 H 0.096 0.904 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.100 0.900 31 H 0.046 0.954 32 H 0.021 0.979 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.098 0.902 36 H 0.199 0.801 37 H 0.114 0.886 38 H 0.112 0.888 39 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 0.607 -1.833 -9.679 9.869 hybrid contribution -1.274 0.007 1.873 2.265 sum -0.666 -1.826 -7.806 8.044 Atomic orbital electron populations 1.21768 0.96512 1.00859 1.01632 1.21415 0.95258 0.97357 1.01562 1.22242 0.98564 0.96600 1.02207 1.22061 0.91810 0.90829 1.01679 1.62373 1.59411 1.02251 1.01460 1.19823 0.94660 0.93749 0.85194 1.21134 1.26733 1.16380 0.90150 0.91901 1.24949 0.95314 0.95096 0.99051 1.69948 1.35691 1.24721 1.23366 0.86488 0.79219 0.79258 0.82760 1.19689 1.21028 1.21062 1.20580 0.95674 0.98273 0.87183 1.22338 0.87938 1.00751 1.00668 1.23247 1.01587 1.01445 0.95364 1.74987 0.99335 1.16578 1.23406 1.78203 1.21461 1.05889 1.02664 1.47094 1.12867 1.27769 1.19683 1.22217 0.95564 0.89387 0.98395 0.93366 0.92726 0.93191 0.92653 0.92018 0.90401 0.92945 0.92800 0.89962 0.95441 0.97914 0.92926 0.91961 0.90181 0.80068 0.88589 0.88806 0.88295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 9.91 37.16 0.37 -1.50 16 2 C -0.12 -1.63 5.93 -26.73 -0.16 -1.79 16 3 C -0.16 -2.53 4.58 -26.73 -0.12 -2.65 16 4 C 0.06 1.15 5.02 -3.82 -0.02 1.13 16 5 N -0.53 -10.13 4.65 -237.52 -1.10 -11.23 16 6 C 0.19 4.41 4.49 -4.97 -0.02 4.39 16 7 C -0.51 -13.15 8.50 -34.44 -0.29 -13.44 16 8 H 0.06 1.66 7.11 -52.49 -0.37 1.28 16 9 C 0.06 1.53 5.46 -17.82 -0.10 1.44 16 10 N -0.90 -25.17 13.29 55.43 0.74 -24.43 16 11 Si 0.89 20.77 29.54 -169.99 -5.02 15.75 16 12 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 13 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 14 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 15 C 0.11 1.79 5.05 -4.98 -0.03 1.76 16 16 C 0.02 0.26 5.90 -82.09 -0.48 -0.22 16 17 C -0.06 -0.91 11.09 -17.74 -0.20 -1.10 16 18 N -0.28 -4.89 12.41 30.24 0.38 -4.51 16 19 N -0.10 -1.77 13.16 60.35 0.79 -0.97 16 20 N -0.28 -4.29 3.74 -63.78 -0.24 -4.53 16 21 C 0.09 0.98 11.22 59.85 0.67 1.65 16 22 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.08 1.48 6.28 -51.93 -0.33 1.16 16 28 H 0.05 0.77 6.26 -51.93 -0.33 0.45 16 29 H 0.05 0.91 6.69 -51.93 -0.35 0.57 16 30 H 0.08 1.64 6.83 -51.93 -0.35 1.29 16 31 H 0.03 0.68 7.87 -51.93 -0.41 0.27 16 32 H 0.00 0.08 6.03 -51.93 -0.31 -0.24 16 33 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 34 H 0.06 0.93 5.89 -51.93 -0.31 0.63 16 35 H 0.08 1.21 7.02 -51.93 -0.36 0.85 16 36 H 0.18 2.36 8.06 -52.48 -0.42 1.94 16 37 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.10 1.02 7.24 -51.93 -0.38 0.64 16 LS Contribution 315.82 15.07 4.76 4.76 Total: -1.00 -29.76 315.82 -6.09 -35.85 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -6.01 Total: -0.34 kcal Atomic # 6 Polarization: -9.96 SS G_CDS: -0.38 Total: -10.34 kcal Atomic # 7 Polarization: -46.25 SS G_CDS: 0.56 Total: -45.68 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -29.76 -6.09 -35.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238159442.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.548 kcal (2) G-P(sol) polarization free energy of solvation -29.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds