Wall clock time and date at job start Sun Mar 29 2020 23:42:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47329 * 2 1 4 4 C 1.52997 * 109.46993 * 179.97438 * 3 2 1 5 5 N 1.46904 * 109.46987 * 180.45217 * 4 3 2 6 6 C 1.46898 * 111.00103 * 61.17342 * 5 4 3 7 7 C 1.50706 * 109.46566 * 66.04730 * 6 5 4 8 8 H 1.07995 * 120.00467 * 0.02562 * 7 6 5 9 9 C 1.37878 * 119.99666 * 179.97438 * 7 6 5 10 10 N 1.31512 * 120.00155 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 120.00044 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47087 * 0.02562 * 11 9 7 13 13 H 1.48505 * 109.47095 * 119.99812 * 11 9 7 14 14 H 1.48495 * 109.47133 * 239.99907 * 11 9 7 15 15 C 1.46902 * 111.00012 * 297.22377 * 5 4 3 16 16 C 1.50699 * 109.46959 * 288.42695 * 15 5 4 17 17 C 1.35354 * 126.91455 * 95.38306 * 16 15 5 18 18 N 1.33770 * 106.49970 * 179.90476 * 17 16 15 19 19 N 1.28635 * 108.88171 * 0.36169 * 18 17 16 20 20 N 1.28712 * 110.18119 * 359.76943 * 19 18 17 21 21 C 1.46509 * 125.87072 * 179.97438 * 20 19 18 22 22 H 1.08998 * 109.47366 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47256 * 299.99798 * 1 2 3 24 24 H 1.08997 * 109.47217 * 60.00028 * 1 2 3 25 25 H 1.09002 * 109.46983 * 239.99736 * 2 1 3 26 26 H 1.09001 * 109.46908 * 120.00371 * 2 1 3 27 27 H 1.09000 * 109.46787 * 59.99914 * 3 2 1 28 28 H 1.08997 * 109.46948 * 300.00136 * 3 2 1 29 29 H 1.08999 * 109.47017 * 60.45875 * 4 3 2 30 30 H 1.08997 * 109.47269 * 300.45065 * 4 3 2 31 31 H 1.08999 * 109.47635 * 186.04329 * 6 5 4 32 32 H 1.08997 * 109.47687 * 306.05016 * 6 5 4 33 33 H 0.96998 * 120.00575 * 180.02562 * 10 9 7 34 34 H 1.09001 * 109.47499 * 48.42503 * 15 5 4 35 35 H 1.08996 * 109.47358 * 168.42413 * 15 5 4 36 36 H 1.08003 * 126.74858 * 0.02687 * 17 16 15 37 37 H 1.08998 * 109.47011 * 270.02616 * 21 20 19 38 38 H 1.09002 * 109.46670 * 30.02745 * 21 20 19 39 39 H 1.08993 * 109.46962 * 150.02578 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0598 2.8273 0.0116 6 6 3.6113 3.5348 1.2184 7 6 4.2567 2.9167 2.4319 8 1 4.9327 2.0821 2.3180 9 6 3.9850 3.4173 3.6875 10 7 3.1631 4.4345 3.8261 11 14 4.7855 2.6517 5.1916 12 1 5.6631 1.5309 4.7688 13 1 5.5971 3.6766 5.8961 14 1 3.7332 2.1395 6.1056 15 6 3.6443 3.5422 -1.2026 16 6 4.4234 3.0222 -2.3831 17 6 4.0332 2.0650 -3.2568 18 7 5.0300 1.9257 -4.1380 19 7 5.9780 2.7371 -3.8258 20 7 5.6563 3.4143 -2.7796 21 6 6.4833 4.4339 -2.1292 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 1.6767 1.9562 0.8900 28 1 1.6767 1.9563 -0.8900 29 1 3.9337 0.9355 -0.8932 30 1 3.9330 0.9217 0.8868 31 1 3.8957 4.5849 1.1508 32 1 2.5275 3.4567 1.3038 33 1 2.9721 4.7870 4.7094 34 1 2.5793 3.3830 -1.3716 35 1 3.8374 4.6080 -1.0808 36 1 3.0996 1.5220 -3.2460 37 1 7.1099 3.9642 -1.3711 38 1 7.1150 4.9184 -2.8737 39 1 5.8400 5.1777 -1.6590 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001238159442.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:42:16 Heat of formation + Delta-G solvation = 70.235725 kcal Electronic energy + Delta-G solvation = -19154.565038 eV Core-core repulsion = 16326.456040 eV Total energy + Delta-G solvation = -2828.108998 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -44.18842 -39.24856 -35.64016 -35.25819 -34.64947 -32.60094 -29.84364 -29.15048 -28.57727 -26.33364 -25.01402 -23.47930 -22.59350 -22.06295 -20.70710 -18.39722 -18.01664 -17.63342 -16.81289 -16.45797 -16.23222 -15.62510 -15.42614 -15.12123 -14.50737 -14.20098 -14.09295 -13.87783 -13.70454 -13.42799 -13.02406 -12.89160 -12.75339 -12.61606 -12.45555 -12.23012 -12.05993 -11.92015 -11.81981 -11.61746 -11.25939 -11.21924 -10.95149 -10.57181 -10.13406 -8.93013 -8.17579 -6.24608 0.63357 1.39745 1.42687 1.53230 1.55849 1.61336 2.41620 3.16256 3.34126 3.49641 3.78510 4.00226 4.06858 4.10222 4.15613 4.31148 4.37349 4.49447 4.53437 4.59810 4.67626 4.85342 4.86019 4.93788 4.96146 5.04380 5.18007 5.25192 5.26979 5.30052 5.42245 5.51534 5.58176 5.67820 5.71403 6.08572 6.33471 6.61467 6.90952 7.44245 7.53276 8.92680 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.016530 B = 0.007132 C = 0.005450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.486067 B = 3925.043484 C = 5136.207908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.115 4.115 3 C -0.147 4.147 4 C 0.070 3.930 5 N -0.538 5.538 6 C 0.208 3.792 7 C -0.514 4.514 8 H 0.055 0.945 9 C 0.009 3.991 10 N -0.930 5.930 11 Si 0.955 3.045 12 H -0.269 1.269 13 H -0.280 1.280 14 H -0.281 1.281 15 C 0.120 3.880 16 C 0.010 3.990 17 C -0.054 4.054 18 N -0.303 5.303 19 N -0.119 5.119 20 N -0.277 5.277 21 C 0.077 3.923 22 H 0.064 0.936 23 H 0.040 0.960 24 H 0.061 0.939 25 H 0.073 0.927 26 H 0.050 0.950 27 H 0.043 0.957 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.055 0.945 31 H 0.009 0.991 32 H -0.014 1.014 33 H 0.263 0.737 34 H 0.076 0.924 35 H 0.086 0.914 36 H 0.206 0.794 37 H 0.094 0.906 38 H 0.119 0.881 39 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.025 -2.313 -9.419 9.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.154 4.154 3 C -0.186 4.186 4 C -0.058 4.058 5 N -0.262 5.262 6 C 0.082 3.918 7 C -0.552 4.552 8 H 0.073 0.927 9 C -0.189 4.189 10 N -0.571 5.571 11 Si 0.781 3.219 12 H -0.193 1.193 13 H -0.206 1.206 14 H -0.207 1.207 15 C -0.010 4.010 16 C -0.124 4.124 17 C -0.213 4.213 18 N -0.168 5.168 19 N -0.098 5.098 20 N -0.071 5.071 21 C -0.063 4.063 22 H 0.083 0.917 23 H 0.059 0.941 24 H 0.080 0.920 25 H 0.092 0.908 26 H 0.068 0.932 27 H 0.061 0.939 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.073 0.927 31 H 0.027 0.973 32 H 0.003 0.997 33 H 0.072 0.928 34 H 0.094 0.906 35 H 0.104 0.896 36 H 0.223 0.777 37 H 0.112 0.888 38 H 0.138 0.862 39 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 0.570 -2.424 -10.358 10.654 hybrid contribution -1.234 0.202 2.036 2.389 sum -0.664 -2.223 -8.323 8.640 Atomic orbital electron populations 1.21743 0.95224 1.01984 1.01554 1.21403 0.96386 0.95650 1.01915 1.22108 0.97102 0.98073 1.01273 1.21985 0.93021 0.89858 1.00968 1.62208 1.59871 1.02765 1.01319 1.19431 0.93209 0.92818 0.86312 1.21416 1.26343 1.15995 0.91477 0.92662 1.25683 0.95872 0.95553 1.01780 1.70045 1.37015 1.25987 1.24010 0.85552 0.78369 0.78518 0.79498 1.19315 1.20592 1.20738 1.20534 0.96440 0.98278 0.85731 1.22275 0.88292 1.01206 1.00657 1.23687 1.01982 1.01066 0.94524 1.74969 1.00033 1.17345 1.24435 1.78157 1.21744 1.06441 1.03496 1.47404 1.12976 1.27630 1.19085 1.22528 0.95816 0.88906 0.99090 0.91666 0.94068 0.92027 0.90805 0.93156 0.93866 0.91186 0.91349 0.92666 0.97274 0.99666 0.92840 0.90639 0.89551 0.77681 0.88751 0.86243 0.87241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.38 9.91 71.98 0.71 -2.67 16 2 C -0.12 -3.02 5.93 30.59 0.18 -2.83 16 3 C -0.15 -4.58 4.58 30.59 0.14 -4.44 16 4 C 0.07 2.44 5.02 86.30 0.43 2.87 16 5 N -0.54 -20.25 4.65 -905.37 -4.21 -24.46 16 6 C 0.21 9.77 4.49 85.56 0.38 10.16 16 7 C -0.51 -27.05 8.50 25.60 0.22 -26.83 16 8 H 0.06 2.94 7.11 -2.91 -0.02 2.92 16 9 C 0.01 0.51 5.46 84.66 0.46 0.97 16 10 N -0.93 -52.71 13.29 21.45 0.28 -52.43 16 11 Si 0.95 42.72 29.54 68.60 2.03 44.75 16 12 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 13 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 14 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 15 C 0.12 3.62 5.05 85.56 0.43 4.05 16 16 C 0.01 0.29 5.90 41.36 0.24 0.54 16 17 C -0.05 -1.56 11.09 83.73 0.93 -0.63 16 18 N -0.30 -10.19 12.41 -58.25 -0.72 -10.91 16 19 N -0.12 -3.93 13.16 37.02 0.49 -3.44 16 20 N -0.28 -8.01 3.74 -355.71 -1.33 -9.34 16 21 C 0.08 1.62 11.22 127.77 1.43 3.05 16 22 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 23 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 24 H 0.06 1.26 8.14 -2.39 -0.02 1.25 16 25 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.04 1.66 6.28 -2.39 -0.01 1.65 16 28 H 0.07 1.92 6.26 -2.39 -0.01 1.91 16 29 H 0.07 2.20 6.69 -2.39 -0.02 2.18 16 30 H 0.05 2.22 6.83 -2.39 -0.02 2.20 16 31 H 0.01 0.46 7.87 -2.39 -0.02 0.44 16 32 H -0.01 -0.72 6.03 -2.39 -0.01 -0.73 16 33 H 0.26 14.13 8.31 -92.71 -0.77 13.36 16 34 H 0.08 2.10 5.89 -2.39 -0.01 2.09 16 35 H 0.09 2.50 7.02 -2.39 -0.02 2.48 16 36 H 0.21 4.69 8.06 -2.91 -0.02 4.66 16 37 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 38 H 0.12 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.11 2.08 7.24 -2.39 -0.02 2.06 16 Total: -1.00 -63.36 315.82 3.13 -60.23 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: 1.03 Total: 11.37 kcal Atomic # 6 Polarization: -21.34 SS G_CDS: 5.57 Total: -15.77 kcal Atomic # 7 Polarization: -95.09 SS G_CDS: -5.49 Total: -100.59 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Total: -63.36 3.13 -60.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238159442.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.464 kcal (2) G-P(sol) polarization free energy of solvation -63.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.228 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds