Wall clock time and date at job start Mon Mar 30 2020 00:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86796 * 119.99987 * 2 1 4 4 H 1.48509 * 109.46898 * 269.99982 * 3 2 1 5 5 H 1.48498 * 109.47363 * 29.99559 * 3 2 1 6 6 H 1.48499 * 109.47275 * 149.99656 * 3 2 1 7 7 C 1.37877 * 119.99696 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99442 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00381 * 0.02562 * 7 2 1 10 10 N 1.46904 * 109.47291 * 182.58577 * 9 7 2 11 11 C 1.46899 * 110.99832 * 282.95936 * 10 9 7 12 12 C 1.54887 * 110.48785 * 72.16807 * 11 10 9 13 13 C 1.55236 * 102.59225 * 156.67092 * 12 11 10 14 14 C 1.54266 * 104.22754 * 322.08731 * 13 12 11 15 15 C 1.53872 * 106.60424 * 23.60615 * 14 13 12 16 16 C 1.46901 * 110.99950 * 159.00516 * 10 9 7 17 17 C 1.53125 * 109.52122 * 53.36743 * 16 10 9 18 18 C 1.53042 * 109.27433 * 182.43921 * 17 16 10 19 19 N 1.46838 * 109.52418 * 59.18266 * 18 17 16 20 20 C 1.46847 * 111.20061 * 298.25556 * 19 18 17 21 21 C 1.53036 * 109.52203 * 61.74006 * 20 19 18 22 22 H 0.96997 * 120.00195 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.46907 * 62.58482 * 9 7 2 24 24 H 1.08998 * 109.47122 * 302.59062 * 9 7 2 25 25 H 1.08998 * 110.43782 * 309.62306 * 11 10 9 26 26 H 1.08998 * 110.75764 * 275.07045 * 12 11 10 27 27 H 1.09007 * 110.75928 * 38.43152 * 12 11 10 28 28 H 1.08990 * 110.46868 * 203.39259 * 13 12 11 29 29 H 1.09001 * 110.57677 * 80.82693 * 13 12 11 30 30 H 1.09000 * 110.03029 * 264.31984 * 14 13 12 31 31 H 1.08998 * 110.07157 * 142.91557 * 14 13 12 32 32 H 1.08995 * 110.03304 * 240.71535 * 15 14 13 33 33 H 1.08994 * 110.02948 * 119.28210 * 15 14 13 34 34 H 1.08995 * 109.52179 * 173.56302 * 16 10 9 35 35 H 1.09000 * 109.50683 * 302.38141 * 17 16 10 36 36 H 1.09000 * 109.49969 * 62.50331 * 17 16 10 37 37 H 1.08997 * 109.46038 * 299.16587 * 18 17 16 38 38 H 1.09003 * 109.45996 * 179.19701 * 18 17 16 39 39 H 1.00907 * 111.00363 * 62.35133 * 19 18 17 40 40 H 1.09003 * 109.46502 * 301.72676 * 20 19 18 41 41 H 1.08998 * 109.45577 * 181.74993 * 20 19 18 42 42 H 1.08999 * 109.50264 * 180.87917 * 21 20 19 43 43 H 1.09008 * 109.53475 * 60.78579 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2044 -3.6150 0.0636 11 6 2.8325 -3.8454 -1.2442 12 6 3.8388 -2.7137 -1.5692 13 6 4.7936 -3.3922 -2.5880 14 6 4.9413 -4.8362 -2.0657 15 6 3.6945 -5.1244 -1.2113 16 6 1.5539 -4.8360 0.5577 17 6 0.3096 -5.1296 -0.2852 18 6 -0.3973 -6.3674 0.2719 19 7 -0.7766 -6.1282 1.6701 20 6 0.4058 -5.8906 2.5079 21 6 1.1367 -4.6386 2.0176 22 1 -0.4850 0.8400 -0.0004 23 1 0.6600 -2.5774 -0.9119 24 1 0.5897 -2.5369 0.8661 25 1 2.0737 -3.9167 -2.0235 26 1 3.3298 -1.8622 -2.0207 27 1 4.3814 -2.4103 -0.6739 28 1 5.7604 -2.8891 -2.5977 29 1 4.3536 -3.3904 -3.5853 30 1 5.8403 -4.9223 -1.4554 31 1 4.9900 -5.5334 -2.9021 32 1 3.9884 -5.3504 -0.1863 33 1 3.1377 -5.9608 -1.6336 34 1 2.2486 -5.6729 0.4873 35 1 -0.3666 -4.2757 -0.2457 36 1 0.6050 -5.3133 -1.3182 37 1 0.2748 -7.2239 0.2194 38 1 -1.2915 -6.5709 -0.3173 39 1 -1.4302 -5.3627 1.7417 40 1 1.0741 -6.7494 2.4450 41 1 0.0947 -5.7476 3.5428 42 1 2.0228 -4.4714 2.6299 43 1 0.4740 -3.7765 2.0935 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001246767948.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:00:47 Heat of formation + Delta-G solvation = -9.675040 kcal Electronic energy + Delta-G solvation = -20235.246474 eV Core-core repulsion = 17507.212629 eV Total energy + Delta-G solvation = -2728.033845 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.42325 -37.35639 -34.56043 -32.53817 -30.53107 -29.80784 -28.37372 -27.21115 -25.60387 -22.95242 -22.52572 -21.68004 -19.99677 -19.80357 -18.33643 -16.54300 -15.60818 -15.46644 -15.00029 -14.42167 -14.38302 -14.27293 -13.70552 -13.17395 -12.96697 -12.81188 -12.36957 -12.24415 -12.01801 -11.71242 -11.51362 -11.02993 -10.89413 -10.83145 -10.77036 -10.68119 -10.36281 -10.28023 -10.15815 -10.08360 -10.04756 -9.84502 -9.41720 -8.99336 -8.37578 -8.16358 -7.16963 -5.99641 -3.98594 3.31542 3.38431 3.42259 4.42715 4.55108 4.81274 5.08821 5.15724 5.17663 5.30952 5.34185 5.38302 5.47550 5.70018 5.71444 5.76152 5.84732 5.91856 6.01197 6.05824 6.09667 6.12092 6.17368 6.24953 6.30121 6.33306 6.38377 6.42330 6.53593 6.64867 6.71364 6.79047 7.01691 7.08897 7.24514 7.32060 7.39240 7.57094 7.88387 8.17075 8.29490 8.60408 9.08855 9.64350 11.11014 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.015353 B = 0.009029 C = 0.006231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.269165 B = 3100.303621 C = 4492.730471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.053 3.947 3 Si 0.891 3.109 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.273 1.273 7 C -0.501 4.501 8 H 0.070 0.930 9 C 0.193 3.807 10 N -0.524 5.524 11 C 0.094 3.906 12 C -0.099 4.099 13 C -0.131 4.131 14 C -0.119 4.119 15 C -0.122 4.122 16 C 0.087 3.913 17 C -0.190 4.190 18 C 0.063 3.937 19 N -0.689 5.689 20 C 0.059 3.941 21 C -0.149 4.149 22 H 0.259 0.741 23 H -0.011 1.011 24 H 0.032 0.968 25 H 0.033 0.967 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.053 0.947 32 H 0.069 0.931 33 H 0.050 0.950 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.059 0.941 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.341 0.659 40 H 0.066 0.934 41 H 0.071 0.929 42 H 0.069 0.931 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.894 -11.026 -0.908 11.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.148 4.148 3 Si 0.720 3.280 4 H -0.209 1.209 5 H -0.214 1.214 6 H -0.198 1.198 7 C -0.539 4.539 8 H 0.088 0.912 9 C 0.068 3.932 10 N -0.246 5.246 11 C -0.015 4.015 12 C -0.137 4.137 13 C -0.169 4.169 14 C -0.157 4.157 15 C -0.160 4.160 16 C -0.023 4.023 17 C -0.231 4.231 18 C -0.068 4.068 19 N -0.317 5.317 20 C -0.072 4.072 21 C -0.188 4.188 22 H 0.069 0.931 23 H 0.006 0.994 24 H 0.050 0.950 25 H 0.051 0.949 26 H 0.095 0.905 27 H 0.093 0.907 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.088 0.912 33 H 0.069 0.931 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.077 0.923 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.158 0.842 40 H 0.085 0.915 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.082 -11.448 -0.403 12.161 hybrid contribution -0.046 1.740 -0.985 2.000 sum 4.035 -9.708 -1.388 10.605 Atomic orbital electron populations 1.69956 1.06004 1.26530 1.51696 1.24983 0.94792 0.99127 0.95870 0.86596 0.79897 0.83560 0.77978 1.20854 1.21419 1.19817 1.21395 0.93979 0.89743 1.48802 0.91166 1.19760 0.90182 0.87479 0.95761 1.62458 1.33481 1.04313 1.24380 1.22256 0.94902 0.93821 0.90499 1.22640 0.95551 0.97449 0.98058 1.22500 0.99750 0.95469 0.99199 1.22058 0.97983 0.96965 0.98697 1.22302 0.96086 0.97522 1.00050 1.21689 0.92887 0.93884 0.93811 1.22979 1.00183 0.99540 1.00381 1.21927 0.99186 0.96969 0.88694 1.60744 1.14832 1.47544 1.08627 1.22010 0.91584 0.96850 0.96707 1.22326 1.01465 0.98673 0.96344 0.93137 0.99356 0.95019 0.94909 0.90511 0.90680 0.92356 0.92459 0.92350 0.92859 0.91188 0.93130 0.91209 0.90968 0.92260 0.91592 0.91496 0.84186 0.91537 0.91087 0.91205 0.90934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.43 13.29 55.43 0.74 -25.70 16 2 C 0.05 1.47 5.46 -17.82 -0.10 1.37 16 3 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.50 -13.55 7.58 -34.44 -0.26 -13.81 16 8 H 0.07 1.87 5.46 -52.49 -0.29 1.59 16 9 C 0.19 4.81 3.29 -4.98 -0.02 4.79 16 10 N -0.52 -10.76 4.30 -218.03 -0.94 -11.69 16 11 C 0.09 1.77 2.07 -66.05 -0.14 1.63 16 12 C -0.10 -1.88 4.55 -24.55 -0.11 -1.99 16 13 C -0.13 -1.98 6.84 -24.88 -0.17 -2.15 16 14 C -0.12 -1.64 6.80 -25.61 -0.17 -1.82 16 15 C -0.12 -1.87 5.04 -25.61 -0.13 -2.00 16 16 C 0.09 1.50 1.95 -67.59 -0.13 1.37 16 17 C -0.19 -3.15 4.73 -26.65 -0.13 -3.28 16 18 C 0.06 0.87 6.55 -3.84 -0.03 0.85 16 19 N -0.69 -9.68 6.87 -113.82 -0.78 -10.46 16 20 C 0.06 0.81 6.55 -3.83 -0.03 0.78 16 21 C -0.15 -2.48 5.38 -26.65 -0.14 -2.62 16 22 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 23 H -0.01 -0.31 7.18 -51.93 -0.37 -0.68 16 24 H 0.03 0.85 5.79 -51.93 -0.30 0.55 16 25 H 0.03 0.66 7.15 -51.93 -0.37 0.29 16 26 H 0.08 1.63 7.20 -51.93 -0.37 1.26 16 27 H 0.07 1.52 7.16 -51.93 -0.37 1.15 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 1.10 7.03 -51.93 -0.37 0.73 16 33 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.07 1.14 5.93 -51.93 -0.31 0.83 16 35 H 0.07 1.40 6.63 -51.93 -0.34 1.06 16 36 H 0.06 0.99 7.16 -51.93 -0.37 0.62 16 37 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.34 4.84 8.86 -39.29 -0.35 4.50 16 40 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 43 H 0.07 1.40 6.18 -51.92 -0.32 1.08 16 LS Contribution 313.59 15.07 4.73 4.73 Total: -1.00 -28.05 313.59 -10.32 -38.37 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: -7.50 Total: 5.11 kcal Atomic # 6 Polarization: -15.31 SS G_CDS: -1.55 Total: -16.86 kcal Atomic # 7 Polarization: -46.87 SS G_CDS: -0.98 Total: -47.85 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -28.05 -10.32 -38.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246767948.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.699 kcal (2) G-P(sol) polarization free energy of solvation -28.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds