Wall clock time and date at job start Sun Mar 29 2020 22:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42899 * 109.46889 * 2 1 4 4 C 1.42905 * 113.99778 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.46882 * 30.00382 * 4 3 2 6 6 C 1.52998 * 109.47307 * 269.99994 * 4 3 2 7 7 N 1.46498 * 109.46694 * 150.00236 * 4 3 2 8 8 C 1.34954 * 126.03576 * 244.99752 * 7 4 3 9 9 C 1.35312 * 107.74596 * 179.97438 * 8 7 4 10 10 C 1.50703 * 126.04009 * 180.02562 * 9 8 7 11 11 C 1.52998 * 109.47049 * 90.00195 * 10 9 8 12 12 C 1.53005 * 109.46955 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.46920 * 179.97438 * 12 11 10 14 14 H 1.08002 * 120.00329 * 0.02562 * 13 12 11 15 15 C 1.37878 * 119.99885 * 179.97438 * 13 12 11 16 16 N 1.31509 * 119.99911 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00041 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.46969 * 90.00210 * 17 15 13 19 19 H 1.48494 * 109.47181 * 210.00296 * 17 15 13 20 20 H 1.48500 * 109.47109 * 330.00327 * 17 15 13 21 21 C 1.39875 * 107.92178 * 0.02562 * 9 8 7 22 22 N 1.30833 * 108.19869 * 359.74296 * 21 9 8 23 23 H 1.09008 * 109.47201 * 60.00236 * 1 2 3 24 24 H 1.09001 * 109.47296 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47286 * 300.00017 * 1 2 3 26 26 H 1.08997 * 109.47286 * 239.99983 * 2 1 3 27 27 H 1.08997 * 109.46848 * 120.00081 * 2 1 3 28 28 H 1.09002 * 109.47171 * 179.97438 * 6 4 3 29 29 H 1.09004 * 109.47223 * 300.00490 * 6 4 3 30 30 H 1.08997 * 109.46785 * 60.00007 * 6 4 3 31 31 H 1.08000 * 126.12725 * 359.96084 * 8 7 4 32 32 H 1.09007 * 109.46952 * 210.00156 * 10 9 8 33 33 H 1.09000 * 109.46889 * 329.99728 * 10 9 8 34 34 H 1.08999 * 109.47458 * 299.99932 * 11 10 9 35 35 H 1.09000 * 109.47656 * 60.00003 * 11 10 9 36 36 H 1.08992 * 109.47229 * 299.99583 * 12 11 10 37 37 H 1.08995 * 109.47216 * 60.00248 * 12 11 10 38 38 H 0.97000 * 119.99948 * 180.02562 * 16 15 13 39 39 H 1.08004 * 125.90027 * 179.97438 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8635 0.6015 -0.5130 6 6 3.9387 1.5006 1.4433 7 7 3.8234 2.6910 -0.6900 8 6 4.5195 2.7667 -1.8437 9 6 4.6752 4.0763 -2.1463 10 6 5.3918 4.6287 -3.3514 11 6 4.3999 4.7901 -4.5051 12 6 5.1277 5.3504 -5.7288 13 6 4.1508 5.5087 -6.8653 14 1 3.1144 5.2373 -6.7284 15 6 4.5798 6.0010 -8.0797 16 7 5.8416 6.3319 -8.2462 17 14 3.3688 6.1980 -9.4882 18 1 2.7627 7.5526 -9.4342 19 1 4.0799 6.0250 -10.7803 20 1 2.3009 5.1728 -9.3699 21 6 4.0534 4.8268 -1.1430 22 7 3.5380 3.9973 -0.2723 23 1 -0.3634 0.5138 -0.8901 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 5.0253 1.5862 1.4437 29 1 3.5059 2.3592 1.9569 30 1 3.6465 0.5848 1.9571 31 1 4.8868 1.9316 -2.4217 32 1 5.8230 5.5990 -3.1046 33 1 6.1857 3.9432 -3.6479 34 1 3.9687 3.8199 -4.7519 35 1 3.6061 5.4756 -4.2086 36 1 5.5591 6.3204 -5.4824 37 1 5.9212 4.6644 -6.0252 38 1 6.1434 6.6787 -9.1004 39 1 4.0037 5.9047 -1.0971 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250065737.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:55:28 Heat of formation + Delta-G solvation = 11.077233 kcal Electronic energy + Delta-G solvation = -17925.808415 eV Core-core repulsion = 15062.841361 eV Total energy + Delta-G solvation = -2862.967054 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.05600 -38.55108 -34.80669 -33.47244 -32.25304 -30.99457 -30.01853 -29.34908 -26.34700 -23.97631 -23.05934 -23.02893 -20.63908 -20.28626 -19.58067 -17.39157 -16.97224 -16.11987 -16.08261 -14.78824 -14.50390 -14.37627 -13.98694 -13.72177 -13.47529 -13.05485 -12.88636 -12.56026 -12.47840 -12.31235 -12.13663 -11.88907 -11.65498 -11.43542 -11.19174 -10.78818 -10.59928 -10.49339 -10.24966 -10.08898 -9.54360 -9.29977 -9.26008 -9.02597 -8.27651 -8.03056 -5.93156 -3.94683 1.94689 2.42402 3.10521 3.36338 3.42181 3.43204 3.46195 4.25076 4.50535 4.52174 4.69289 4.81114 4.91921 4.96984 5.14232 5.18455 5.27129 5.42438 5.43218 5.55280 5.66316 5.71996 5.80015 5.86687 6.06373 6.29325 6.35865 6.49891 6.69943 6.88634 6.96282 7.06846 7.22819 7.29758 7.77471 7.90800 7.94408 8.08883 8.52607 9.13011 9.68906 11.18185 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.026730 B = 0.003676 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.241445 B = 7615.773027 C = 8340.216883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.061 3.939 3 O -0.387 6.387 4 C 0.336 3.664 5 H 0.091 0.909 6 C -0.175 4.175 7 N -0.377 5.377 8 C 0.044 3.956 9 C -0.208 4.208 10 C -0.045 4.045 11 C -0.102 4.102 12 C 0.020 3.980 13 C -0.518 4.518 14 H 0.054 0.946 15 C 0.055 3.945 16 N -0.897 5.897 17 Si 0.890 3.110 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.274 1.274 21 C 0.051 3.949 22 N -0.287 5.287 23 H 0.065 0.935 24 H 0.073 0.927 25 H 0.064 0.936 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.170 0.830 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.043 0.957 35 H 0.046 0.954 36 H 0.016 0.984 37 H 0.015 0.985 38 H 0.259 0.741 39 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.116 -13.443 18.762 23.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.016 4.016 3 O -0.304 6.304 4 C 0.195 3.805 5 H 0.108 0.892 6 C -0.233 4.233 7 N -0.166 5.166 8 C -0.098 4.098 9 C -0.219 4.219 10 C -0.084 4.084 11 C -0.140 4.140 12 C -0.017 4.017 13 C -0.556 4.556 14 H 0.072 0.928 15 C -0.145 4.145 16 N -0.537 5.537 17 Si 0.718 3.282 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.199 1.199 21 C -0.136 4.136 22 N -0.107 5.107 23 H 0.084 0.916 24 H 0.092 0.908 25 H 0.083 0.917 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.091 0.909 29 H 0.099 0.901 30 H 0.091 0.909 31 H 0.187 0.813 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.034 0.966 37 H 0.033 0.967 38 H 0.069 0.931 39 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -4.837 -13.506 19.795 24.447 hybrid contribution -0.058 -0.028 -1.733 1.735 sum -4.894 -13.534 18.062 23.094 Atomic orbital electron populations 1.21743 0.93197 1.02370 1.03555 1.22554 0.96198 0.82649 1.00240 1.88015 1.20443 1.27330 1.94619 1.21713 0.82210 0.83325 0.93268 0.89184 1.22390 1.02076 1.03924 0.94934 1.48553 1.43603 1.05075 1.19375 1.22291 0.99173 0.99216 0.89135 1.20453 1.08863 0.91817 1.00727 1.20088 0.97300 1.00022 0.90959 1.21616 0.97456 1.00101 0.94861 1.19127 0.95515 0.96037 0.91064 1.21305 0.95516 1.42177 0.96602 0.92814 1.25023 0.95100 0.95704 0.98705 1.69965 1.14663 1.44431 1.24622 0.86627 0.81274 0.78469 0.81834 1.20693 1.21287 1.19945 1.23907 0.96988 0.99970 0.92742 1.77274 1.22572 0.86883 1.23959 0.91585 0.90830 0.91668 0.92998 0.92938 0.90926 0.90096 0.90897 0.81288 0.91588 0.92002 0.93778 0.93482 0.96594 0.96705 0.93110 0.80102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 10.28 37.16 0.38 -0.76 16 2 C 0.06 0.49 6.47 37.16 0.24 0.73 16 3 O -0.39 -4.74 10.21 -35.23 -0.36 -5.10 16 4 C 0.34 3.69 3.67 -4.04 -0.01 3.67 16 5 H 0.09 0.73 7.72 -51.93 -0.40 0.33 16 6 C -0.18 -1.58 9.72 37.16 0.36 -1.22 16 7 N -0.38 -5.44 3.54 -59.45 -0.21 -5.65 16 8 C 0.04 0.64 11.36 -17.22 -0.20 0.44 16 9 C -0.21 -3.34 5.35 -105.05 -0.56 -3.90 16 10 C -0.05 -0.79 5.70 -27.88 -0.16 -0.94 16 11 C -0.10 -2.19 5.14 -26.73 -0.14 -2.32 16 12 C 0.02 0.51 4.97 -27.88 -0.14 0.38 16 13 C -0.52 -15.05 9.11 -34.44 -0.31 -15.37 16 14 H 0.05 1.53 7.74 -52.49 -0.41 1.13 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 16 N -0.90 -27.39 13.29 55.43 0.74 -26.66 16 17 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16 18 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 20 H -0.27 -6.69 7.11 56.52 0.40 -6.28 16 21 C 0.05 0.81 11.96 -17.36 -0.21 0.60 16 22 N -0.29 -4.70 12.42 30.63 0.38 -4.32 16 23 H 0.07 0.58 8.14 -51.92 -0.42 0.16 16 24 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.05 0.37 8.09 -51.93 -0.42 -0.05 16 27 H 0.05 0.32 7.87 -51.93 -0.41 -0.09 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.07 0.48 7.87 -51.93 -0.41 0.07 16 31 H 0.17 1.94 8.06 -52.49 -0.42 1.51 16 32 H 0.07 1.12 8.14 -51.92 -0.42 0.70 16 33 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.26 7.45 8.31 -40.82 -0.34 7.12 16 39 H 0.18 2.43 8.06 -52.48 -0.42 2.01 16 LS Contribution 332.78 15.07 5.01 5.01 Total: -1.00 -33.89 332.78 -6.98 -40.87 By element: Atomic # 1 Polarization: 2.62 SS G_CDS: -6.68 Total: -4.06 kcal Atomic # 6 Polarization: -16.32 SS G_CDS: -0.84 Total: -17.16 kcal Atomic # 7 Polarization: -37.53 SS G_CDS: 0.91 Total: -36.62 kcal Atomic # 8 Polarization: -4.74 SS G_CDS: -0.36 Total: -5.10 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -33.89 -6.98 -40.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250065737.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.942 kcal (2) G-P(sol) polarization free energy of solvation -33.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds