Wall clock time and date at job start Sun Mar 29 2020 22:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42899 * 109.46889 * 2 1 4 4 C 1.42905 * 113.99778 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.46882 * 30.00382 * 4 3 2 6 6 C 1.52998 * 109.47307 * 269.99994 * 4 3 2 7 7 N 1.46498 * 109.46694 * 150.00236 * 4 3 2 8 8 C 1.34954 * 126.03576 * 244.99752 * 7 4 3 9 9 C 1.35312 * 107.74596 * 179.97438 * 8 7 4 10 10 C 1.50703 * 126.04009 * 180.02562 * 9 8 7 11 11 C 1.52998 * 109.47049 * 90.00195 * 10 9 8 12 12 C 1.53005 * 109.46955 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.46920 * 179.97438 * 12 11 10 14 14 H 1.08002 * 120.00329 * 0.02562 * 13 12 11 15 15 C 1.37878 * 119.99885 * 179.97438 * 13 12 11 16 16 N 1.31509 * 119.99911 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00041 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.46969 * 90.00210 * 17 15 13 19 19 H 1.48494 * 109.47181 * 210.00296 * 17 15 13 20 20 H 1.48500 * 109.47109 * 330.00327 * 17 15 13 21 21 C 1.39875 * 107.92178 * 0.02562 * 9 8 7 22 22 N 1.30833 * 108.19869 * 359.74296 * 21 9 8 23 23 H 1.09008 * 109.47201 * 60.00236 * 1 2 3 24 24 H 1.09001 * 109.47296 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47286 * 300.00017 * 1 2 3 26 26 H 1.08997 * 109.47286 * 239.99983 * 2 1 3 27 27 H 1.08997 * 109.46848 * 120.00081 * 2 1 3 28 28 H 1.09002 * 109.47171 * 179.97438 * 6 4 3 29 29 H 1.09004 * 109.47223 * 300.00490 * 6 4 3 30 30 H 1.08997 * 109.46785 * 60.00007 * 6 4 3 31 31 H 1.08000 * 126.12725 * 359.96084 * 8 7 4 32 32 H 1.09007 * 109.46952 * 210.00156 * 10 9 8 33 33 H 1.09000 * 109.46889 * 329.99728 * 10 9 8 34 34 H 1.08999 * 109.47458 * 299.99932 * 11 10 9 35 35 H 1.09000 * 109.47656 * 60.00003 * 11 10 9 36 36 H 1.08992 * 109.47229 * 299.99583 * 12 11 10 37 37 H 1.08995 * 109.47216 * 60.00248 * 12 11 10 38 38 H 0.97000 * 119.99948 * 180.02562 * 16 15 13 39 39 H 1.08004 * 125.90027 * 179.97438 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8635 0.6015 -0.5130 6 6 3.9387 1.5006 1.4433 7 7 3.8234 2.6910 -0.6900 8 6 4.5195 2.7667 -1.8437 9 6 4.6752 4.0763 -2.1463 10 6 5.3918 4.6287 -3.3514 11 6 4.3999 4.7901 -4.5051 12 6 5.1277 5.3504 -5.7288 13 6 4.1508 5.5087 -6.8653 14 1 3.1144 5.2373 -6.7284 15 6 4.5798 6.0010 -8.0797 16 7 5.8416 6.3319 -8.2462 17 14 3.3688 6.1980 -9.4882 18 1 2.7627 7.5526 -9.4342 19 1 4.0799 6.0250 -10.7803 20 1 2.3009 5.1728 -9.3699 21 6 4.0534 4.8268 -1.1430 22 7 3.5380 3.9973 -0.2723 23 1 -0.3634 0.5138 -0.8901 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 5.0253 1.5862 1.4437 29 1 3.5059 2.3592 1.9569 30 1 3.6465 0.5848 1.9571 31 1 4.8868 1.9316 -2.4217 32 1 5.8230 5.5990 -3.1046 33 1 6.1857 3.9432 -3.6479 34 1 3.9687 3.8199 -4.7519 35 1 3.6061 5.4756 -4.2086 36 1 5.5591 6.3204 -5.4824 37 1 5.9212 4.6644 -6.0252 38 1 6.1434 6.6787 -9.1004 39 1 4.0037 5.9047 -1.0971 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250065737.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:55:28 Heat of formation + Delta-G solvation = -10.129823 kcal Electronic energy + Delta-G solvation = -17926.728021 eV Core-core repulsion = 15062.841361 eV Total energy + Delta-G solvation = -2863.886661 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.17034 -39.35317 -36.50562 -34.76178 -33.91585 -31.79848 -31.35694 -30.50191 -28.02429 -25.30507 -24.43878 -23.72504 -22.09447 -21.64025 -20.84455 -18.59813 -18.13965 -17.77207 -16.78470 -16.51547 -15.80197 -15.65830 -15.40332 -14.75094 -14.36363 -14.32851 -14.00737 -13.84163 -13.70601 -13.43153 -13.18182 -12.98429 -12.96568 -12.58483 -12.48117 -12.41048 -12.33742 -12.12360 -11.66681 -11.33105 -11.21924 -11.05219 -10.81269 -10.51757 -10.42602 -9.27462 -8.16766 -6.27404 0.86488 1.40639 1.42072 1.47310 1.53164 1.89200 2.43293 2.66701 3.15671 3.50574 3.75030 3.95091 4.08043 4.14789 4.23278 4.32883 4.39793 4.43496 4.52205 4.64861 4.71375 4.77232 4.84286 4.91214 4.96091 5.01653 5.13731 5.22096 5.33773 5.35103 5.39887 5.59343 5.73383 5.85684 5.88461 5.93578 6.29759 6.32652 6.77113 6.89876 7.41288 8.94683 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.026730 B = 0.003676 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.241445 B = 7615.773027 C = 8340.216883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.053 3.947 3 O -0.419 6.419 4 C 0.323 3.677 5 H 0.124 0.876 6 C -0.168 4.168 7 N -0.377 5.377 8 C 0.056 3.944 9 C -0.234 4.234 10 C -0.030 4.030 11 C -0.088 4.088 12 C 0.023 3.977 13 C -0.544 4.544 14 H 0.054 0.946 15 C 0.000 4.000 16 N -0.932 5.932 17 Si 0.962 3.038 18 H -0.273 1.273 19 H -0.280 1.280 20 H -0.265 1.265 21 C 0.042 3.958 22 N -0.315 5.315 23 H 0.046 0.954 24 H 0.098 0.902 25 H 0.058 0.942 26 H 0.063 0.937 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.055 0.945 30 H 0.101 0.899 31 H 0.201 0.799 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.043 0.957 35 H 0.039 0.961 36 H -0.007 1.007 37 H -0.004 1.004 38 H 0.263 0.737 39 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.777 -15.274 19.032 24.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.023 4.023 3 O -0.337 6.337 4 C 0.183 3.817 5 H 0.142 0.858 6 C -0.226 4.226 7 N -0.165 5.165 8 C -0.088 4.088 9 C -0.245 4.245 10 C -0.069 4.069 11 C -0.126 4.126 12 C -0.014 4.014 13 C -0.582 4.582 14 H 0.072 0.928 15 C -0.198 4.198 16 N -0.573 5.573 17 Si 0.787 3.213 18 H -0.199 1.199 19 H -0.205 1.205 20 H -0.190 1.190 21 C -0.144 4.144 22 N -0.136 5.136 23 H 0.065 0.935 24 H 0.117 0.883 25 H 0.077 0.923 26 H 0.082 0.918 27 H 0.096 0.904 28 H 0.096 0.904 29 H 0.074 0.926 30 H 0.120 0.880 31 H 0.218 0.782 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.062 0.938 35 H 0.058 0.942 36 H 0.011 0.989 37 H 0.014 0.986 38 H 0.072 0.928 39 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -5.513 -15.350 20.096 25.881 hybrid contribution 0.139 0.468 -1.775 1.841 sum -5.374 -14.881 18.321 24.207 Atomic orbital electron populations 1.21784 0.93242 1.03603 1.02271 1.22821 0.96244 0.81232 1.01999 1.87979 1.21047 1.29837 1.94856 1.22253 0.82194 0.82832 0.94387 0.85837 1.22355 1.02129 1.04271 0.93832 1.48925 1.42851 1.05432 1.19283 1.22757 0.97697 0.99524 0.88809 1.20321 1.10572 0.92820 1.00765 1.19825 0.96427 1.00495 0.90161 1.21400 0.97612 0.99278 0.94266 1.19042 0.94963 0.94624 0.92750 1.21736 0.96034 1.42529 0.97897 0.92773 1.25952 0.97054 0.95125 1.01646 1.70087 1.16617 1.44990 1.25580 0.85492 0.78869 0.78797 0.78161 1.19853 1.20488 1.18984 1.24173 0.96782 1.00785 0.92671 1.77226 1.23506 0.88085 1.24760 0.93468 0.88337 0.92333 0.91827 0.90443 0.90404 0.92582 0.88016 0.78246 0.91627 0.91253 0.93842 0.94175 0.98853 0.98593 0.92773 0.78970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 10.28 71.98 0.74 -1.33 16 2 C 0.05 0.73 6.47 71.98 0.47 1.20 16 3 O -0.42 -9.57 10.21 -148.98 -1.52 -11.09 16 4 C 0.32 6.33 3.67 86.38 0.32 6.65 16 5 H 0.12 1.55 7.72 -2.39 -0.02 1.53 16 6 C -0.17 -2.68 9.72 71.98 0.70 -1.98 16 7 N -0.38 -10.28 3.54 -442.46 -1.57 -11.85 16 8 C 0.06 1.51 11.36 83.54 0.95 2.46 16 9 C -0.23 -7.31 5.35 -20.14 -0.11 -7.42 16 10 C -0.03 -1.05 5.70 29.85 0.17 -0.88 16 11 C -0.09 -3.76 5.14 30.60 0.16 -3.60 16 12 C 0.02 1.25 4.97 29.85 0.15 1.40 16 13 C -0.54 -31.96 9.11 25.60 0.23 -31.73 16 14 H 0.05 3.10 7.74 -2.91 -0.02 3.07 16 15 C 0.00 -0.01 5.46 84.66 0.46 0.45 16 16 N -0.93 -57.52 13.29 21.45 0.28 -57.24 16 17 Si 0.96 45.20 29.54 68.60 2.03 47.22 16 18 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 19 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 20 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 21 C 0.04 1.33 11.96 85.24 1.02 2.35 16 22 N -0.31 -10.19 12.42 -57.02 -0.71 -10.90 16 23 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 24 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 25 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.06 0.72 8.09 -2.39 -0.02 0.70 16 27 H 0.08 0.68 7.87 -2.39 -0.02 0.66 16 28 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.06 1.18 8.14 -2.38 -0.02 1.17 16 30 H 0.10 1.00 7.87 -2.39 -0.02 0.98 16 31 H 0.20 3.93 8.06 -2.91 -0.02 3.91 16 32 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 33 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 34 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.04 1.74 8.14 -2.39 -0.02 1.73 16 36 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 37 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 38 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 39 H 0.19 5.21 8.06 -2.91 -0.02 5.19 16 Total: -1.00 -73.53 332.78 4.76 -68.77 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: 0.99 Total: 7.51 kcal Atomic # 6 Polarization: -37.68 SS G_CDS: 5.25 Total: -32.42 kcal Atomic # 7 Polarization: -77.99 SS G_CDS: -1.99 Total: -79.99 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: -1.52 Total: -11.09 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.22 kcal Total: -73.53 4.76 -68.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250065737.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.639 kcal (2) G-P(sol) polarization free energy of solvation -73.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds